Wall clock time and date at job start Mon Mar 30 2020 07:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 H 1.07993 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46803 * 60.00539 * 9 7 5 11 11 H 1.48499 * 109.47065 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00184 * 9 7 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47112 * 294.99000 * 17 16 15 19 19 C 1.53000 * 109.47112 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47036 * 60.00872 * 19 18 17 21 21 C 1.53000 * 109.47026 * 299.99804 * 20 19 18 22 22 C 1.52997 * 109.47260 * 59.99902 * 21 20 19 23 23 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 24 24 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 26 26 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 27 27 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 28 28 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 29 29 H 1.00899 * 110.99995 * 151.04723 * 13 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 32 32 H 1.09001 * 109.47194 * 299.99524 * 15 14 13 33 33 H 1.08992 * 109.47399 * 59.99697 * 15 14 13 34 34 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 35 35 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 36 36 H 1.09000 * 109.47630 * 54.99890 * 17 16 15 37 37 H 1.09000 * 109.47599 * 300.00908 * 18 17 16 38 38 H 1.09001 * 109.46686 * 60.00481 * 18 17 16 39 39 H 1.09000 * 109.47170 * 300.00622 * 19 18 17 40 40 H 1.09003 * 109.46958 * 180.02562 * 19 18 17 41 41 H 1.09004 * 109.47224 * 179.97438 * 20 19 18 42 42 H 1.09001 * 109.47615 * 59.99381 * 20 19 18 43 43 H 1.09000 * 109.47102 * 300.00203 * 21 20 19 44 44 H 1.09001 * 109.47254 * 180.02562 * 21 20 19 45 45 H 1.09004 * 109.47610 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.47278 * 59.99858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8378 -3.2993 9 14 6.0921 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2269 11 1 6.5871 -1.7613 -3.6490 12 1 6.4845 0.3698 -2.4971 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 2.6608 0.4202 4.7694 17 6 3.1752 -0.3351 5.9966 18 6 2.1642 -1.4130 6.3928 19 6 2.6783 -2.1678 7.6203 20 6 2.8610 -1.1886 8.7816 21 6 3.8720 -0.1107 8.3855 22 6 3.3580 0.6442 7.1579 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.7516 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 4.0609 -2.2453 -4.0343 29 1 2.9173 -1.1205 1.0288 30 1 1.0869 0.6164 2.5525 31 1 2.7587 1.0463 2.1182 32 1 1.9201 -1.3566 3.8031 33 1 3.5915 -0.9261 3.3683 34 1 3.3367 1.2443 4.5409 35 1 1.6652 0.8132 4.9752 36 1 4.1313 -0.8026 5.7612 37 1 1.2081 -0.9455 6.6282 38 1 2.0337 -2.1103 5.5653 39 1 3.6346 -2.6353 7.3852 40 1 1.9583 -2.9360 7.9023 41 1 3.2269 -1.7265 9.6563 42 1 1.9048 -0.7211 9.0166 43 1 4.8282 -0.5781 8.1504 44 1 4.0025 0.5867 9.2130 45 1 4.0784 1.4119 6.8754 46 1 2.4017 1.1116 7.3929 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694020474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:13 Heat of formation + Delta-G solvation = -61.659661 kcal Electronic energy + Delta-G solvation = -18878.892713 eV Core-core repulsion = 16186.719078 eV Total energy + Delta-G solvation = -2692.173635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99900 -36.81182 -34.40632 -32.61890 -31.09958 -30.83410 -28.30313 -27.35820 -24.67224 -23.07392 -22.71994 -21.36825 -20.52852 -19.81946 -19.22137 -16.33624 -15.65674 -15.51592 -14.81997 -14.61336 -14.37126 -14.27087 -13.87853 -13.66922 -13.32514 -12.74015 -12.41628 -12.23357 -12.03244 -11.82156 -11.61454 -11.56131 -11.26146 -11.24381 -11.11277 -11.00246 -10.76437 -10.69056 -10.51070 -10.48130 -10.45843 -10.15011 -10.02347 -9.87301 -9.17563 -9.04534 -8.37806 -7.57266 -6.01082 -4.04182 3.31737 3.36649 3.38559 4.44328 4.48082 4.56298 4.62796 4.87749 5.00963 5.12429 5.23832 5.30296 5.36659 5.37278 5.38886 5.40389 5.52699 5.62464 5.75902 5.81499 5.85910 5.87119 5.97772 5.99611 6.00517 6.05561 6.09676 6.15315 6.18289 6.26537 6.28155 6.35526 6.40141 6.53614 6.56272 6.64293 6.97204 6.99563 7.57592 7.66237 7.98999 8.12444 8.33946 8.41095 9.01853 9.59745 11.09867 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023659 B = 0.003724 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.182443 B = 7516.524720 C = 8193.355131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.060 3.940 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.115 4.115 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.353 0.647 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 2.960 21.484 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.070 4.070 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.104 4.104 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.152 4.152 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.174 0.826 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.603 2.609 21.466 21.780 hybrid contribution 1.851 0.636 -0.396 1.997 sum -0.751 3.245 21.069 21.331 Atomic orbital electron populations 1.21786 0.96842 1.01244 0.99367 1.21600 0.93289 0.95807 0.91567 0.95487 1.19278 0.95363 0.96188 0.90871 1.21143 0.92270 1.34501 1.08300 0.93111 1.24990 0.98235 0.95197 0.95698 1.69952 1.35587 1.35555 1.11962 0.86693 0.85913 0.78146 0.77457 1.20200 1.21254 1.20382 1.60564 1.34611 1.32229 1.04458 1.21935 0.99359 0.94251 0.91492 1.21610 1.01513 0.98640 0.93761 1.21596 1.01032 0.98229 0.94195 1.21164 0.99152 0.95795 0.94338 1.21639 0.98424 0.97750 0.97536 1.21546 1.01202 0.97707 0.95361 1.21534 0.99378 0.96979 0.97777 1.21532 0.98820 0.97691 0.97680 1.21595 1.01058 0.97751 0.94815 0.93422 0.92701 0.94574 0.95614 0.96131 0.92899 0.82641 0.92222 0.96267 0.91171 0.92266 0.92279 0.92190 0.91293 0.92193 0.91334 0.92104 0.92263 0.92458 0.92202 0.92119 0.92394 0.92185 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.41 37.15 0.35 -2.15 16 2 C 0.09 1.86 2.59 -67.71 -0.18 1.69 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.60 8.12 -34.44 -0.28 -14.88 16 6 H 0.05 1.38 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.54 6.31 -106.72 -0.67 -14.22 16 14 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 15 C -0.12 -1.60 5.23 -26.73 -0.14 -1.74 16 16 C -0.11 -1.27 4.68 -26.73 -0.13 -1.39 16 17 C -0.09 -0.86 2.19 -90.62 -0.20 -1.06 16 18 C -0.12 -1.13 4.96 -26.73 -0.13 -1.26 16 19 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 22 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.35 7.57 7.21 -39.29 -0.28 7.28 16 30 H 0.06 0.94 7.44 -51.93 -0.39 0.55 16 31 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -28.65 351.42 -10.50 -39.15 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -9.28 Total: 1.67 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.56 Total: -22.44 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.06 Total: -40.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.65 -10.50 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694020474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.510 kcal (2) G-P(sol) polarization free energy of solvation -28.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds