Wall clock time and date at job start Mon Mar 30 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46899 * 2 1 4 4 H 1.09007 * 109.47009 * 174.08905 * 3 2 1 5 5 C 1.50697 * 109.46953 * 54.09492 * 3 2 1 6 6 H 1.08012 * 119.99238 * 239.99845 * 5 3 2 7 7 C 1.37869 * 120.00721 * 59.99458 * 5 3 2 8 8 N 1.31517 * 119.99855 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00366 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47343 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47256 * 120.00099 * 9 7 5 12 12 H 1.48501 * 109.47229 * 240.00141 * 9 7 5 13 13 N 1.46901 * 109.47360 * 294.08861 * 3 2 1 14 14 C 1.46905 * 110.99776 * 275.76766 * 13 3 2 15 15 C 1.53006 * 109.46818 * 176.28075 * 14 13 3 16 16 C 1.52998 * 109.46974 * 185.00282 * 15 14 13 17 17 C 1.52997 * 109.46813 * 180.02562 * 16 15 14 18 18 H 1.09000 * 109.46975 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47246 * 299.99487 * 17 16 15 20 20 C 1.53000 * 109.47440 * 59.99773 * 17 16 15 21 21 C 1.52998 * 109.47303 * 299.99927 * 20 17 16 22 22 H 1.09004 * 109.46954 * 300.00484 * 21 20 17 23 23 C 1.52991 * 109.47514 * 179.97438 * 21 20 17 24 24 C 1.53000 * 109.46952 * 64.99917 * 15 14 13 25 25 H 1.08998 * 109.46903 * 178.56293 * 1 2 3 26 26 H 1.08994 * 109.46893 * 298.55528 * 1 2 3 27 27 H 1.08993 * 109.47403 * 58.56087 * 1 2 3 28 28 H 1.09005 * 109.46916 * 240.00516 * 2 1 3 29 29 H 1.08997 * 109.47567 * 120.00383 * 2 1 3 30 30 H 0.96997 * 120.00519 * 179.97438 * 8 7 5 31 31 H 1.00900 * 110.99577 * 39.71948 * 13 3 2 32 32 H 1.08999 * 109.46962 * 56.28065 * 14 13 3 33 33 H 1.08999 * 109.47270 * 296.27947 * 14 13 3 34 34 H 1.09004 * 109.46928 * 305.00206 * 15 14 13 35 35 H 1.09007 * 109.46522 * 299.99558 * 16 15 14 36 36 H 1.08998 * 109.47255 * 59.99751 * 16 15 14 37 37 H 1.09000 * 109.47052 * 60.00147 * 19 17 16 38 38 H 1.09001 * 109.47381 * 180.02562 * 19 17 16 39 39 H 1.09001 * 109.47650 * 300.00639 * 19 17 16 40 40 H 1.09001 * 109.47278 * 180.02562 * 20 17 16 41 41 H 1.09004 * 109.46986 * 60.00089 * 20 17 16 42 42 H 1.08995 * 109.47722 * 300.00266 * 23 21 20 43 43 H 1.09001 * 109.46878 * 60.00255 * 23 21 20 44 44 H 1.09005 * 109.47541 * 179.97438 * 23 21 20 45 45 H 1.09000 * 109.47160 * 299.99937 * 24 15 14 46 46 H 1.08994 * 109.47090 * 60.00252 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4444 0.1058 5 6 1.4218 2.1938 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6309 1.7666 2.4449 8 7 2.3703 0.7036 2.6751 9 14 0.8640 2.6975 3.8713 10 1 0.0842 3.8484 3.3492 11 1 -0.0368 1.7906 4.6270 12 1 1.9355 3.1939 4.7716 13 7 1.6702 2.0927 -1.2644 14 6 2.6513 1.7942 -2.3163 15 6 2.1854 2.4095 -3.6375 16 6 3.1408 1.9946 -4.7582 17 6 2.6754 2.6105 -6.0791 18 1 3.3562 2.3153 -6.8774 19 6 1.2641 2.1163 -6.4030 20 6 2.6658 4.1355 -5.9555 21 6 1.7104 4.5504 -4.8348 22 1 0.7050 4.1982 -5.0655 23 6 1.7013 6.0752 -4.7107 24 6 2.1754 3.9345 -3.5142 25 1 -0.3633 -1.0273 -0.0258 26 1 -0.3633 0.4912 0.9026 27 1 -0.3634 0.5360 -0.8767 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.5178 0.4032 3.5855 31 1 0.7405 1.8246 -1.5503 32 1 2.7436 0.7142 -2.4311 33 1 3.6186 2.2143 -2.0409 34 1 1.1801 2.0570 -3.8679 35 1 4.1462 2.3473 -4.5276 36 1 3.1480 0.9082 -4.8459 37 1 0.5835 2.4118 -5.6046 38 1 0.9327 2.5547 -7.3443 39 1 1.2708 1.0298 -6.4910 40 1 2.3337 4.5742 -6.8964 41 1 3.6713 4.4876 -5.7248 42 1 2.7067 6.4271 -4.4798 43 1 1.3699 6.5143 -5.6518 44 1 1.0203 6.3709 -3.9126 45 1 1.4948 4.2301 -2.7158 46 1 3.1807 4.2870 -3.2837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695305234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:08 Heat of formation + Delta-G solvation = -58.485515 kcal Electronic energy + Delta-G solvation = -19959.728747 eV Core-core repulsion = 17267.692753 eV Total energy + Delta-G solvation = -2692.035994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47773 -38.19236 -34.99733 -33.96326 -33.24930 -31.17118 -28.32606 -27.57662 -27.25707 -25.66718 -24.87022 -22.28572 -21.38789 -21.17905 -19.45264 -18.11151 -16.78645 -16.48282 -16.05286 -15.89449 -15.41538 -15.14468 -14.71291 -14.56024 -14.41006 -14.20370 -13.61115 -13.57589 -13.36380 -13.11545 -12.86129 -12.76098 -12.53351 -12.44520 -12.41409 -12.32733 -11.97875 -11.87924 -11.75414 -11.65656 -11.54021 -11.38619 -11.03785 -10.96711 -10.72427 -10.59517 -10.42876 -8.84927 -8.04476 -6.12718 1.41504 1.44260 1.55562 2.46380 3.24413 3.63897 3.78508 3.85625 4.01171 4.23796 4.31899 4.44156 4.49751 4.52811 4.57600 4.59340 4.65996 4.73720 4.74810 4.84907 4.89569 4.91391 4.93077 5.01227 5.06826 5.11477 5.13991 5.20610 5.24096 5.30604 5.38816 5.43915 5.44312 5.47969 5.52454 5.57981 5.67906 5.70591 5.74585 5.76528 5.87238 6.34118 6.72495 6.90905 7.02404 7.55390 9.01364 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027753 B = 0.004994 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.642523 B = 5605.287103 C = 6153.299502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.220 3.780 4 H -0.008 1.008 5 C -0.496 4.496 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.681 5.681 14 C 0.067 3.933 15 C -0.073 4.073 16 C -0.106 4.106 17 C -0.086 4.086 18 H 0.077 0.923 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.090 4.090 22 H 0.071 0.929 23 C -0.145 4.145 24 C -0.094 4.094 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.258 0.742 31 H 0.330 0.670 32 H 0.011 0.989 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 4.289 -18.012 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.111 3.889 4 H 0.009 0.991 5 C -0.535 4.535 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.312 5.312 14 C -0.062 4.062 15 C -0.092 4.092 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.096 0.904 19 C -0.207 4.207 20 C -0.142 4.142 21 C -0.109 4.109 22 H 0.089 0.911 23 C -0.202 4.202 24 C -0.131 4.131 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.149 0.851 32 H 0.029 0.971 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.131 4.807 -17.699 18.375 hybrid contribution -0.171 -0.794 1.215 1.461 sum -1.303 4.013 -16.484 17.015 Atomic orbital electron populations 1.21437 0.95818 0.99296 1.00918 1.21937 0.96599 1.00105 0.99099 1.18938 0.93354 0.89504 0.87072 0.99054 1.21308 1.30049 1.11217 0.90892 0.92998 1.25602 0.96051 0.95927 1.01000 1.70030 1.40397 1.25402 1.20518 0.85603 0.78205 0.78840 0.79562 1.19329 1.20721 1.21139 1.60717 1.04760 1.62642 1.03113 1.21969 0.95868 0.96385 0.92028 1.21099 0.99471 0.95981 0.92634 1.21566 0.98455 1.00010 0.94389 1.21059 0.97598 0.95333 0.96428 0.90419 1.21926 0.96384 1.00792 1.01557 1.21600 0.99261 0.95049 0.98278 1.21155 0.99660 0.95399 0.94650 0.91073 1.21802 1.01509 0.95185 1.01707 1.21426 1.00580 0.94070 0.97073 0.93875 0.93918 0.93211 0.95871 0.92220 0.93292 0.85128 0.97078 0.93746 0.91242 0.92504 0.92288 0.92716 0.91874 0.92942 0.90938 0.92411 0.93112 0.91626 0.93431 0.92903 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.39 71.98 0.68 -4.28 16 2 C -0.14 -6.58 5.50 30.60 0.17 -6.41 16 3 C 0.22 11.21 2.33 44.17 0.10 11.31 16 4 H -0.01 -0.49 7.86 -2.38 -0.02 -0.51 16 5 C -0.50 -27.39 7.35 25.60 0.19 -27.20 16 6 H 0.05 2.91 7.81 -2.90 -0.02 2.89 16 7 C 0.01 0.67 5.22 84.65 0.44 1.11 16 8 N -0.92 -53.56 11.39 21.44 0.24 -53.32 16 9 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 N -0.68 -28.87 5.71 -495.42 -2.83 -31.70 16 14 C 0.07 2.44 4.87 86.30 0.42 2.86 16 15 C -0.07 -2.04 2.02 -10.79 -0.02 -2.07 16 16 C -0.11 -2.47 4.73 30.59 0.14 -2.32 16 17 C -0.09 -1.60 3.19 -10.80 -0.03 -1.64 16 18 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 19 C -0.15 -2.65 8.50 71.98 0.61 -2.04 16 20 C -0.10 -1.93 4.73 30.59 0.14 -1.78 16 21 C -0.09 -1.95 2.45 -10.81 -0.03 -1.97 16 22 H 0.07 1.52 6.43 -2.38 -0.02 1.51 16 23 C -0.14 -2.90 9.19 71.98 0.66 -2.23 16 24 C -0.09 -2.61 4.37 30.58 0.13 -2.48 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.99 7.05 -2.39 -0.02 1.97 16 27 H 0.05 1.87 6.42 -2.39 -0.02 1.86 16 28 H 0.02 1.01 7.24 -2.38 -0.02 0.99 16 29 H 0.06 3.24 6.25 -2.39 -0.01 3.23 16 30 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.33 13.18 6.55 -89.69 -0.59 12.60 16 32 H 0.01 0.41 7.23 -2.39 -0.02 0.39 16 33 H 0.04 1.74 8.13 -2.39 -0.02 1.72 16 34 H 0.07 1.91 6.42 -2.38 -0.02 1.90 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.08 4.81 -2.39 -0.01 1.07 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.05 1.72 7.75 -2.39 -0.02 1.71 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -58.53 337.76 3.38 -55.15 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.33 Total: 22.62 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 3.61 Total: -39.15 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.58 Total: -85.02 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -58.53 3.38 -55.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695305234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.338 kcal (2) G-P(sol) polarization free energy of solvation -58.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds