Wall clock time and date at job start Mon Mar 30 2020 07:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47234 * 120.00305 * 2 1 3 5 5 C 1.50694 * 109.46970 * 184.99818 * 4 2 1 6 6 H 1.08005 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99745 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00262 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46934 * 120.00434 * 9 7 5 12 12 H 1.48499 * 109.47226 * 240.00296 * 9 7 5 13 13 N 1.46904 * 109.46972 * 240.00527 * 2 1 3 14 14 C 1.46896 * 111.00016 * 84.99766 * 13 2 1 15 15 C 1.53002 * 109.47181 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46817 * 65.00049 * 15 14 13 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.46733 * 299.99162 * 18 17 16 20 20 C 1.53002 * 109.46982 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 22 22 C 1.53000 * 109.47233 * 184.99855 * 15 14 13 23 23 H 1.09004 * 109.47264 * 59.99732 * 1 2 3 24 24 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47125 * 299.99907 * 1 2 3 26 26 H 1.09002 * 109.46940 * 305.00389 * 4 2 1 27 27 H 1.09004 * 109.46752 * 64.99833 * 4 2 1 28 28 H 0.96990 * 120.00169 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99668 * 208.95224 * 13 2 1 30 30 H 1.09008 * 109.47165 * 59.99956 * 14 13 2 31 31 H 1.08997 * 109.47437 * 299.99850 * 14 13 2 32 32 H 1.09002 * 109.47070 * 305.00230 * 15 14 13 33 33 H 1.08996 * 109.47853 * 300.00202 * 16 15 14 34 34 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 35 35 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 37 37 H 1.09004 * 109.46976 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47380 * 300.00211 * 19 18 17 39 39 H 1.09001 * 109.46989 * 60.00699 * 19 18 17 40 40 H 1.09002 * 109.47067 * 299.99652 * 20 18 17 41 41 H 1.09000 * 109.47312 * 59.99678 * 20 18 17 42 42 H 1.09004 * 109.46930 * 179.97438 * 20 18 17 43 43 H 1.08993 * 109.47194 * 179.97438 * 21 18 17 44 44 H 1.09002 * 109.46695 * 59.99734 * 21 18 17 45 45 H 1.08992 * 109.47399 * 300.00166 * 22 15 14 46 46 H 1.09004 * 109.46724 * 60.00652 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0855 0.5394 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2999 9 14 6.0921 -1.0603 2.4371 10 1 6.5836 -0.2900 1.2666 11 1 6.4861 -0.3642 3.6883 12 1 6.6863 -2.4211 2.4197 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5962 -0.5326 -3.5743 16 6 1.5844 -1.6098 -3.9705 17 6 2.0978 -2.3648 -5.1982 18 6 2.2812 -1.3854 -6.3594 19 6 0.9394 -0.7283 -6.6891 20 6 2.7952 -2.1403 -7.5869 21 6 3.2929 -0.3082 -5.9632 22 6 2.7799 0.4464 -4.7356 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6054 -0.2619 2.1369 27 1 1.7517 -1.7716 1.2054 28 1 4.0608 -2.2438 4.0352 29 1 2.9173 -1.1204 -1.0289 30 1 2.7588 1.0464 -2.1182 31 1 1.0871 0.6164 -2.5525 32 1 3.5520 -1.0008 -3.3390 33 1 1.4534 -2.3072 -3.1432 34 1 0.6286 -1.1416 -4.2058 35 1 1.3768 -3.1319 -5.4808 36 1 3.0537 -2.8329 -4.9634 37 1 1.0700 -0.0309 -7.5166 38 1 0.2187 -1.4957 -6.9714 39 1 0.5737 -0.1904 -5.8144 40 1 3.7512 -2.6082 -7.3518 41 1 2.0747 -2.9080 -7.8694 42 1 2.9254 -1.4427 -8.4143 43 1 3.4239 0.3891 -6.7905 44 1 4.2488 -0.7765 -5.7282 45 1 1.8242 0.9145 -4.9709 46 1 3.5008 1.2137 -4.4533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:01 Heat of formation + Delta-G solvation = -52.370173 kcal Electronic energy + Delta-G solvation = -19668.875876 eV Core-core repulsion = 16977.105064 eV Total energy + Delta-G solvation = -2691.770813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62071 -36.65567 -33.99560 -32.40700 -30.71032 -29.94140 -27.40926 -27.35598 -26.62856 -23.43073 -22.69087 -22.31472 -20.20496 -19.30598 -18.33193 -16.33133 -15.47633 -14.83174 -14.78567 -14.68995 -14.28306 -14.15252 -13.94889 -13.10033 -13.00054 -12.81610 -12.25346 -12.05988 -11.88580 -11.81654 -11.77378 -11.61592 -11.37965 -11.27920 -11.12252 -10.89806 -10.80471 -10.77330 -10.57342 -10.45930 -10.16962 -9.98329 -9.85748 -9.75185 -9.15261 -9.02750 -8.38370 -7.54361 -6.01461 -4.04239 3.29359 3.37315 3.40356 4.44223 4.63225 4.65407 4.77050 4.93948 5.13073 5.32299 5.33899 5.40595 5.45053 5.51952 5.57972 5.63043 5.69573 5.71530 5.76691 5.92267 5.92337 5.96600 5.99381 6.05039 6.10389 6.17423 6.20127 6.25929 6.29045 6.32442 6.35586 6.41584 6.52977 6.58559 6.73280 6.76236 6.97431 7.00028 7.57932 7.66878 7.99007 8.13019 8.34416 8.41435 9.02273 9.59876 11.09550 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.004671 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.037476 B = 5993.186766 C = 6593.931513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.681 5.681 14 C 0.064 3.936 15 C -0.083 4.083 16 C -0.105 4.105 17 C -0.109 4.109 18 C -0.066 4.066 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.115 4.115 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.353 0.647 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 1.944 -19.132 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.315 5.315 14 C -0.066 4.066 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.066 4.066 19 C -0.201 4.201 20 C -0.198 4.198 21 C -0.143 4.143 22 C -0.153 4.153 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.173 0.827 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.028 1.597 -19.126 19.610 hybrid contribution 1.880 0.626 0.400 2.021 sum -2.148 2.223 -18.725 18.979 Atomic orbital electron populations 1.21781 0.96865 1.01206 0.99313 1.21594 0.93256 0.95793 0.91598 0.95544 1.19277 0.95365 0.96175 0.90869 1.21216 0.92282 1.34281 1.08225 0.93012 1.24988 0.98183 0.95230 0.95717 1.69971 1.35362 1.35732 1.11972 0.86591 0.86059 0.77769 0.77898 1.19874 1.21076 1.20962 1.60547 1.34548 1.32089 1.04266 1.21968 0.99337 0.93986 0.91278 1.21135 0.99281 0.95917 0.93824 1.21492 0.97869 0.97826 0.97057 1.21631 1.01069 0.97189 0.94778 1.20539 0.95441 0.95533 0.95043 1.21962 0.96454 1.00284 1.01369 1.21874 1.00856 0.99854 0.97265 1.21549 0.98199 0.97115 0.97421 1.21591 1.01077 0.97827 0.94833 0.94606 0.92717 0.93499 0.96197 0.95623 0.93035 0.82681 0.96255 0.92186 0.91500 0.90491 0.92390 0.92483 0.92225 0.93283 0.93085 0.91742 0.92825 0.92902 0.93059 0.92529 0.92158 0.91889 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.42 37.16 0.35 -2.10 16 2 C 0.09 1.83 2.59 -67.71 -0.18 1.66 16 3 H 0.03 0.58 7.80 -51.93 -0.40 0.17 16 4 C 0.02 0.53 4.57 -27.89 -0.13 0.40 16 5 C -0.52 -14.42 8.12 -34.44 -0.28 -14.70 16 6 H 0.05 1.40 7.49 -52.48 -0.39 1.01 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.68 -13.04 5.76 -106.72 -0.62 -13.66 16 14 C 0.06 1.03 4.87 -3.83 -0.02 1.01 16 15 C -0.08 -1.12 2.33 -90.62 -0.21 -1.33 16 16 C -0.11 -1.36 4.82 -26.73 -0.13 -1.49 16 17 C -0.11 -1.23 4.73 -26.73 -0.13 -1.35 16 18 C -0.07 -0.65 0.77 -154.51 -0.12 -0.77 16 19 C -0.14 -1.36 7.78 37.16 0.29 -1.08 16 20 C -0.14 -1.25 8.47 37.16 0.31 -0.94 16 21 C -0.11 -1.09 4.73 -26.76 -0.13 -1.22 16 22 C -0.12 -1.33 4.93 -26.76 -0.13 -1.46 16 23 H 0.03 0.58 7.45 -51.93 -0.39 0.20 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.35 7.40 7.21 -39.29 -0.28 7.12 16 30 H 0.02 0.33 8.06 -51.92 -0.42 -0.09 16 31 H 0.06 0.93 7.44 -51.93 -0.39 0.55 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 34 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -28.23 344.79 -9.36 -37.59 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.07 Total: 2.02 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -0.59 Total: -21.77 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.12 Total: -39.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.23 -9.36 -37.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.779 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds