Wall clock time and date at job start Mon Mar 30 2020 07:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47234 * 120.00305 * 2 1 3 5 5 C 1.50694 * 109.46970 * 184.99818 * 4 2 1 6 6 H 1.08005 * 120.00178 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99745 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00262 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46934 * 120.00434 * 9 7 5 12 12 H 1.48499 * 109.47226 * 240.00296 * 9 7 5 13 13 N 1.46904 * 109.46972 * 240.00527 * 2 1 3 14 14 C 1.46896 * 111.00016 * 84.99766 * 13 2 1 15 15 C 1.53002 * 109.47181 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46817 * 65.00049 * 15 14 13 17 17 C 1.52999 * 109.47317 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 17 16 15 19 19 C 1.52997 * 109.46733 * 299.99162 * 18 17 16 20 20 C 1.53002 * 109.46982 * 179.97438 * 18 17 16 21 21 C 1.52997 * 109.47452 * 59.99536 * 18 17 16 22 22 C 1.53000 * 109.47233 * 184.99855 * 15 14 13 23 23 H 1.09004 * 109.47264 * 59.99732 * 1 2 3 24 24 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47125 * 299.99907 * 1 2 3 26 26 H 1.09002 * 109.46940 * 305.00389 * 4 2 1 27 27 H 1.09004 * 109.46752 * 64.99833 * 4 2 1 28 28 H 0.96990 * 120.00169 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99668 * 208.95224 * 13 2 1 30 30 H 1.09008 * 109.47165 * 59.99956 * 14 13 2 31 31 H 1.08997 * 109.47437 * 299.99850 * 14 13 2 32 32 H 1.09002 * 109.47070 * 305.00230 * 15 14 13 33 33 H 1.08996 * 109.47853 * 300.00202 * 16 15 14 34 34 H 1.09002 * 109.47153 * 60.00231 * 16 15 14 35 35 H 1.09000 * 109.47486 * 180.02562 * 17 16 15 36 36 H 1.09002 * 109.46716 * 60.00091 * 17 16 15 37 37 H 1.09004 * 109.46976 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47380 * 300.00211 * 19 18 17 39 39 H 1.09001 * 109.46989 * 60.00699 * 19 18 17 40 40 H 1.09002 * 109.47067 * 299.99652 * 20 18 17 41 41 H 1.09000 * 109.47312 * 59.99678 * 20 18 17 42 42 H 1.09004 * 109.46930 * 179.97438 * 20 18 17 43 43 H 1.08993 * 109.47194 * 179.97438 * 21 18 17 44 44 H 1.09002 * 109.46695 * 59.99734 * 21 18 17 45 45 H 1.08992 * 109.47399 * 300.00166 * 22 15 14 46 46 H 1.09004 * 109.46724 * 60.00652 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0855 0.5394 7 6 4.2305 -1.1927 2.3581 8 7 3.5765 -1.8371 3.2999 9 14 6.0921 -1.0603 2.4371 10 1 6.5836 -0.2900 1.2666 11 1 6.4861 -0.3642 3.6883 12 1 6.6863 -2.4211 2.4197 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5962 -0.5326 -3.5743 16 6 1.5844 -1.6098 -3.9705 17 6 2.0978 -2.3648 -5.1982 18 6 2.2812 -1.3854 -6.3594 19 6 0.9394 -0.7283 -6.6891 20 6 2.7952 -2.1403 -7.5869 21 6 3.2929 -0.3082 -5.9632 22 6 2.7799 0.4464 -4.7356 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6054 -0.2619 2.1369 27 1 1.7517 -1.7716 1.2054 28 1 4.0608 -2.2438 4.0352 29 1 2.9173 -1.1204 -1.0289 30 1 2.7588 1.0464 -2.1182 31 1 1.0871 0.6164 -2.5525 32 1 3.5520 -1.0008 -3.3390 33 1 1.4534 -2.3072 -3.1432 34 1 0.6286 -1.1416 -4.2058 35 1 1.3768 -3.1319 -5.4808 36 1 3.0537 -2.8329 -4.9634 37 1 1.0700 -0.0309 -7.5166 38 1 0.2187 -1.4957 -6.9714 39 1 0.5737 -0.1904 -5.8144 40 1 3.7512 -2.6082 -7.3518 41 1 2.0747 -2.9080 -7.8694 42 1 2.9254 -1.4427 -8.4143 43 1 3.4239 0.3891 -6.7905 44 1 4.2488 -0.7765 -5.7282 45 1 1.8242 0.9145 -4.9709 46 1 3.5008 1.2137 -4.4533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:00 Heat of formation + Delta-G solvation = -66.874071 kcal Electronic energy + Delta-G solvation = -19669.504813 eV Core-core repulsion = 16977.105064 eV Total energy + Delta-G solvation = -2692.399749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56994 -38.21257 -35.42207 -34.27155 -31.68474 -31.35059 -29.29314 -28.12356 -27.75282 -25.21085 -23.92040 -23.45190 -21.36876 -20.95295 -19.23178 -18.52207 -16.83797 -16.46035 -16.05568 -15.81188 -15.63367 -15.37580 -14.82610 -14.66524 -14.10234 -14.02411 -13.59250 -13.41702 -13.23833 -13.14704 -13.05898 -12.73062 -12.69803 -12.58839 -12.54942 -12.38550 -12.22918 -12.07007 -11.91049 -11.71287 -11.59962 -11.27074 -11.01792 -10.95141 -10.75844 -10.69026 -10.58290 -9.12016 -8.20295 -6.30754 1.37903 1.38721 1.50726 2.39227 3.11337 3.45291 3.76058 3.86311 3.92184 4.14816 4.31954 4.34503 4.35337 4.55390 4.58043 4.62932 4.68461 4.72478 4.74035 4.76483 4.87119 4.91057 4.94460 5.01944 5.03955 5.10445 5.15346 5.18005 5.22847 5.27066 5.27519 5.33901 5.35699 5.36411 5.47908 5.55228 5.55532 5.58821 5.70211 5.77034 5.84051 6.20821 6.46531 6.68030 6.84589 7.38056 8.91636 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.004671 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.037476 B = 5993.186766 C = 6593.931513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.094 3.906 3 H 0.020 0.980 4 C 0.028 3.972 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.067 3.933 15 C -0.077 4.077 16 C -0.100 4.100 17 C -0.106 4.106 18 C -0.064 4.064 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.103 4.103 22 C -0.110 4.110 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.050 0.950 26 H -0.007 1.007 27 H -0.003 1.003 28 H 0.263 0.737 29 H 0.339 0.661 30 H 0.012 0.988 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.006 2.707 -21.294 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 H 0.038 0.962 4 C -0.009 4.009 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.063 4.063 15 C -0.096 4.096 16 C -0.137 4.137 17 C -0.144 4.144 18 C -0.064 4.064 19 C -0.199 4.199 20 C -0.196 4.196 21 C -0.141 4.141 22 C -0.148 4.148 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.012 0.988 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.609 2.371 -21.306 21.740 hybrid contribution 1.708 0.383 1.086 2.060 sum -1.901 2.754 -20.221 20.496 Atomic orbital electron populations 1.21687 0.94505 1.01350 1.00782 1.21427 0.95123 0.94615 0.90387 0.96189 1.19129 0.94820 0.94700 0.92262 1.21535 0.93302 1.34027 1.08255 0.92677 1.25885 1.03332 0.94797 0.95312 1.70099 1.37475 1.36737 1.12728 0.85468 0.79834 0.77975 0.78168 1.18851 1.20584 1.20384 1.60599 1.33650 1.32650 1.04324 1.22051 0.99884 0.93441 0.90888 1.21077 0.98514 0.96343 0.93649 1.21407 0.98038 0.97231 0.97026 1.21600 1.00678 0.97515 0.94599 1.20526 0.95823 0.95150 0.94865 1.21945 0.96010 1.00517 1.01451 1.21847 1.00803 1.00069 0.96908 1.21541 0.97935 0.97366 0.97223 1.21547 1.01638 0.97291 0.94341 0.92082 0.93227 0.93058 0.98834 0.98451 0.92815 0.84165 0.96994 0.91130 0.93014 0.92974 0.91810 0.91899 0.93034 0.92190 0.92695 0.92447 0.93051 0.92449 0.92023 0.91023 0.92756 0.91005 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 9.42 71.98 0.68 -3.83 16 2 C 0.09 4.01 2.59 44.92 0.12 4.12 16 3 H 0.02 0.88 7.80 -2.39 -0.02 0.86 16 4 C 0.03 1.50 4.57 29.85 0.14 1.64 16 5 C -0.53 -29.99 8.12 25.60 0.21 -29.79 16 6 H 0.06 3.00 7.49 -2.91 -0.02 2.98 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.68 -26.23 5.76 -491.56 -2.83 -29.06 16 14 C 0.07 2.08 4.87 86.30 0.42 2.50 16 15 C -0.08 -2.03 2.33 -10.79 -0.03 -2.05 16 16 C -0.10 -2.50 4.82 30.59 0.15 -2.35 16 17 C -0.11 -2.26 4.73 30.60 0.14 -2.12 16 18 C -0.06 -1.13 0.77 -52.18 -0.04 -1.17 16 19 C -0.14 -2.31 7.78 71.98 0.56 -1.75 16 20 C -0.14 -2.12 8.47 71.98 0.61 -1.51 16 21 C -0.10 -1.91 4.73 30.58 0.14 -1.77 16 22 C -0.11 -2.34 4.93 30.58 0.15 -2.19 16 23 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.26 15.05 8.31 -92.72 -0.77 14.28 16 29 H 0.34 14.58 7.21 -89.70 -0.65 13.93 16 30 H 0.01 0.39 8.06 -2.38 -0.02 0.37 16 31 H 0.07 2.06 7.44 -2.39 -0.02 2.05 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.56 7.75 -2.39 -0.02 1.54 16 34 H 0.06 1.52 6.43 -2.39 -0.02 1.51 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 1.01 4.81 -2.39 -0.01 1.00 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.42 6.43 -2.39 -0.02 1.40 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -60.75 344.79 3.45 -57.31 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.26 Total: 21.26 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.71 Total: -39.52 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -2.55 Total: -85.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.75 3.45 -57.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -60.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds