Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46861 * 2 1 4 4 C 1.52999 * 109.47116 * 240.00025 * 2 1 3 5 5 C 1.50697 * 109.47025 * 63.13311 * 4 2 1 6 6 H 1.07998 * 120.00364 * 355.92870 * 5 4 2 7 7 C 1.37883 * 119.99841 * 175.92767 * 5 4 2 8 8 N 1.31510 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47308 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47305 * 59.99712 * 9 7 5 12 12 H 1.48507 * 109.47076 * 299.99768 * 9 7 5 13 13 N 1.46897 * 109.47105 * 120.00176 * 2 1 3 14 14 C 1.46899 * 111.00187 * 175.24205 * 13 2 1 15 15 C 1.46905 * 110.99582 * 299.18908 * 13 2 1 16 16 H 1.09002 * 108.85449 * 49.12044 * 15 13 2 17 17 C 1.54067 * 108.88139 * 290.64927 * 15 13 2 18 18 C 1.54068 * 112.81830 * 197.50920 * 17 15 13 19 19 C 1.50473 * 112.49814 * 318.28558 * 18 17 15 20 20 C 1.54239 * 108.53084 * 94.14521 * 19 18 17 21 21 C 1.45537 * 112.40016 * 280.02218 * 20 19 18 22 22 C 1.50483 * 108.87306 * 167.67526 * 15 13 2 23 23 H 1.08996 * 109.63059 * 95.22824 * 22 15 13 24 24 C 1.52999 * 109.62870 * 334.63914 * 22 15 13 25 25 H 1.09000 * 109.46967 * 59.99913 * 1 2 3 26 26 H 1.08995 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46759 * 300.00107 * 1 2 3 28 28 H 1.09005 * 109.46809 * 303.13766 * 4 2 1 29 29 H 1.08995 * 109.46904 * 183.13497 * 4 2 1 30 30 H 0.96994 * 120.00222 * 359.97438 * 8 7 5 31 31 H 1.08998 * 109.47321 * 51.92633 * 14 13 2 32 32 H 1.08998 * 109.47619 * 171.93149 * 14 13 2 33 33 H 1.09006 * 109.46343 * 291.93149 * 14 13 2 34 34 H 1.08997 * 108.81158 * 318.37116 * 17 15 13 35 35 H 1.08994 * 108.81080 * 76.64719 * 17 15 13 36 36 H 1.08998 * 108.87353 * 197.50274 * 18 17 15 37 37 H 1.09002 * 108.79411 * 79.00762 * 18 17 15 38 38 H 1.08995 * 109.62600 * 334.42847 * 19 18 17 39 39 H 1.09008 * 109.62503 * 213.85890 * 19 18 17 40 40 H 1.09001 * 108.89856 * 159.26280 * 20 19 18 41 41 H 1.08999 * 108.89330 * 40.77572 * 20 19 18 42 42 H 1.08992 * 108.89583 * 301.17647 * 21 20 19 43 43 H 1.09005 * 108.89231 * 182.69035 * 21 20 19 44 44 H 1.09003 * 109.46663 * 66.61886 * 24 22 15 45 45 H 1.08998 * 109.46740 * 186.61488 * 24 22 15 46 46 H 1.09001 * 109.47555 * 306.61800 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6021 0.0326 -2.4784 6 1 0.9636 0.8983 -2.3821 7 6 2.0166 -0.3830 -3.7261 8 7 2.7936 -1.4374 -3.8434 9 14 1.4743 0.5519 -5.2498 10 1 2.0507 -0.0924 -6.4571 11 1 1.9484 1.9565 -5.1636 12 1 -0.0079 0.5344 -5.3399 13 7 2.0197 -0.6925 1.1994 14 6 3.4837 -0.8114 1.1779 15 6 1.5645 -0.0152 2.4209 16 1 0.4921 0.1646 2.3452 17 6 2.2882 1.3398 2.5389 18 6 2.2220 1.9308 3.9602 19 6 0.8650 1.7670 4.5893 20 6 0.8691 0.4772 5.4350 21 6 0.6883 -0.7180 4.6244 22 6 1.8256 -0.9120 3.6008 23 1 2.7789 -0.6472 4.0581 24 6 1.8594 -2.3706 3.1403 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6314 -1.7314 -1.2778 29 1 3.1285 -0.7701 -1.2215 30 1 3.0755 -1.9226 -3.0523 31 1 3.9253 0.1688 0.9985 32 1 3.8312 -1.1966 2.1365 33 1 3.7809 -1.4949 0.3824 34 1 3.3339 1.2050 2.2625 35 1 1.8311 2.0440 1.8438 36 1 2.4627 2.9927 3.9120 37 1 2.9626 1.4297 4.5836 38 1 0.1068 1.6915 3.8098 39 1 0.6522 2.6237 5.2290 40 1 0.0635 0.5325 6.1671 41 1 1.8195 0.4048 5.9636 42 1 -0.2586 -0.6421 4.0900 43 1 0.6522 -1.5875 5.2809 44 1 2.7238 -2.5279 2.4951 45 1 1.9309 -3.0244 4.0094 46 1 0.9476 -2.5986 2.5881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = -19.329709 kcal Electronic energy + Delta-G solvation = -20620.956851 eV Core-core repulsion = 17930.618780 eV Total energy + Delta-G solvation = -2690.338071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.01576 -36.79347 -33.80259 -33.09169 -31.63256 -29.79476 -27.90253 -26.67493 -25.05110 -23.79176 -22.87665 -22.47457 -20.49411 -19.66957 -17.95592 -16.83098 -15.65450 -15.38832 -15.04991 -14.51709 -14.17724 -13.78815 -13.71864 -13.60821 -12.94951 -12.76311 -12.62597 -12.30972 -11.99817 -11.74482 -11.50171 -11.33333 -11.25929 -11.04259 -10.96617 -10.73427 -10.63633 -10.54711 -10.45931 -10.31685 -10.13212 -10.09653 -10.00236 -9.79242 -9.26983 -8.49899 -8.26655 -7.59712 -6.30422 -3.98405 3.45717 3.47638 3.66210 4.44472 4.58383 4.62028 4.70201 4.96561 5.14281 5.23379 5.25031 5.37490 5.45274 5.46520 5.51050 5.69460 5.75603 5.86148 5.90720 5.93902 5.95572 6.01686 6.07656 6.10963 6.17211 6.20527 6.21530 6.27205 6.29237 6.33191 6.37700 6.46564 6.53848 6.63723 6.71946 6.80542 6.88858 7.07576 7.38050 7.52751 7.77538 7.85633 8.31786 8.52046 8.94726 9.72838 11.10141 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.005231 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.704526 B = 5351.081685 C = 5634.178740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.090 3.910 3 H 0.028 0.972 4 C 0.019 3.981 5 C -0.596 4.596 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.528 5.528 14 C 0.021 3.979 15 C 0.085 3.915 16 H 0.081 0.919 17 C -0.154 4.154 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.077 4.077 23 H 0.062 0.938 24 C -0.129 4.129 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.269 0.731 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.033 0.967 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.314 3.538 17.739 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.017 4.017 3 H 0.046 0.954 4 C -0.019 4.019 5 C -0.635 4.635 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.251 5.251 14 C -0.127 4.127 15 C -0.024 4.024 16 H 0.099 0.901 17 C -0.193 4.193 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.096 4.096 23 H 0.081 0.919 24 C -0.187 4.187 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.392 3.083 16.056 16.523 hybrid contribution 0.243 0.947 1.635 1.905 sum -2.149 4.029 17.691 18.271 Atomic orbital electron populations 1.21757 0.95514 1.01405 0.99958 1.21677 0.94839 0.95308 0.89876 0.95354 1.19288 0.95569 0.95827 0.91178 1.22026 1.33996 1.14963 0.92535 0.93390 1.25774 0.94850 0.96977 1.01269 1.70766 1.33026 1.17826 1.33457 0.83582 0.75946 0.75220 0.75758 1.20832 1.21610 1.21498 1.62616 1.10017 1.50690 1.01767 1.22455 0.88694 1.00031 1.01472 1.21636 0.99934 0.90463 0.90385 0.90117 1.22653 1.01785 0.98311 0.96521 1.21255 0.97296 1.00033 0.96354 1.21352 0.97955 0.97136 0.99122 1.20484 1.01532 0.95061 0.98160 1.20528 0.99079 0.97611 0.97903 1.20887 0.97873 0.96223 0.94574 0.91950 1.21724 1.03648 0.93812 0.99485 0.91670 0.92889 0.94929 0.96984 0.97191 0.92097 0.95907 0.92166 0.91095 0.91701 0.92361 0.92866 0.92407 0.91594 0.92377 0.92727 0.92473 0.92193 0.92393 0.91542 0.94767 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.79 37.16 0.33 -2.20 16 2 C 0.09 1.89 1.91 -67.71 -0.13 1.76 16 3 H 0.03 0.63 6.89 -51.93 -0.36 0.27 16 4 C 0.02 0.48 3.53 -27.89 -0.10 0.38 16 5 C -0.60 -16.91 8.47 -34.44 -0.29 -17.20 16 6 H 0.05 1.34 6.78 -52.49 -0.36 0.98 16 7 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 8 N -0.91 -28.24 13.65 55.43 0.76 -27.49 16 9 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -9.31 3.32 -227.74 -0.76 -10.07 16 14 C 0.02 0.37 6.79 60.06 0.41 0.77 16 15 C 0.08 1.24 1.36 -68.41 -0.09 1.14 16 16 H 0.08 1.24 4.26 -51.93 -0.22 1.02 16 17 C -0.15 -2.15 4.51 -25.62 -0.12 -2.26 16 18 C -0.11 -1.26 5.32 -27.44 -0.15 -1.41 16 19 C -0.12 -1.23 5.61 -27.34 -0.15 -1.38 16 20 C -0.11 -1.13 5.26 -29.60 -0.16 -1.28 16 21 C -0.11 -1.24 4.68 -29.60 -0.14 -1.38 16 22 C -0.08 -0.97 1.55 -91.23 -0.14 -1.11 16 23 H 0.06 0.78 6.81 -51.93 -0.35 0.43 16 24 C -0.13 -1.74 8.06 37.16 0.30 -1.44 16 25 H 0.06 1.36 6.74 -51.93 -0.35 1.01 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.55 6.19 -51.93 -0.32 0.23 16 28 H 0.01 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.01 0.27 6.05 -51.93 -0.31 -0.05 16 30 H 0.27 8.30 7.20 -40.82 -0.29 8.00 16 31 H 0.02 0.40 6.48 -51.93 -0.34 0.06 16 32 H 0.06 0.88 5.73 -51.93 -0.30 0.58 16 33 H 0.07 1.34 6.65 -51.93 -0.35 0.99 16 34 H 0.06 0.96 5.58 -51.93 -0.29 0.67 16 35 H 0.06 0.89 7.39 -51.93 -0.38 0.51 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.63 6.63 -51.93 -0.34 0.29 16 38 H 0.07 0.75 6.97 -51.93 -0.36 0.39 16 39 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.54 7.47 -51.93 -0.39 0.16 16 42 H 0.06 0.69 7.47 -51.93 -0.39 0.31 16 43 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 44 H 0.07 0.97 5.31 -51.93 -0.28 0.69 16 45 H 0.03 0.40 8.02 -51.93 -0.42 -0.02 16 46 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -29.41 320.82 -8.91 -38.32 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.14 Total: -0.80 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -0.53 Total: -25.28 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.00 Total: -37.56 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.41 -8.91 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.992 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds