Wall clock time and date at job start Mon Mar 30 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46861 * 2 1 4 4 C 1.52999 * 109.47116 * 240.00025 * 2 1 3 5 5 C 1.50697 * 109.47025 * 63.13311 * 4 2 1 6 6 H 1.07998 * 120.00364 * 355.92870 * 5 4 2 7 7 C 1.37883 * 119.99841 * 175.92767 * 5 4 2 8 8 N 1.31510 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99993 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47308 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47305 * 59.99712 * 9 7 5 12 12 H 1.48507 * 109.47076 * 299.99768 * 9 7 5 13 13 N 1.46897 * 109.47105 * 120.00176 * 2 1 3 14 14 C 1.46899 * 111.00187 * 175.24205 * 13 2 1 15 15 C 1.46905 * 110.99582 * 299.18908 * 13 2 1 16 16 H 1.09002 * 108.85449 * 49.12044 * 15 13 2 17 17 C 1.54067 * 108.88139 * 290.64927 * 15 13 2 18 18 C 1.54068 * 112.81830 * 197.50920 * 17 15 13 19 19 C 1.50473 * 112.49814 * 318.28558 * 18 17 15 20 20 C 1.54239 * 108.53084 * 94.14521 * 19 18 17 21 21 C 1.45537 * 112.40016 * 280.02218 * 20 19 18 22 22 C 1.50483 * 108.87306 * 167.67526 * 15 13 2 23 23 H 1.08996 * 109.63059 * 95.22824 * 22 15 13 24 24 C 1.52999 * 109.62870 * 334.63914 * 22 15 13 25 25 H 1.09000 * 109.46967 * 59.99913 * 1 2 3 26 26 H 1.08995 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46759 * 300.00107 * 1 2 3 28 28 H 1.09005 * 109.46809 * 303.13766 * 4 2 1 29 29 H 1.08995 * 109.46904 * 183.13497 * 4 2 1 30 30 H 0.96994 * 120.00222 * 359.97438 * 8 7 5 31 31 H 1.08998 * 109.47321 * 51.92633 * 14 13 2 32 32 H 1.08998 * 109.47619 * 171.93149 * 14 13 2 33 33 H 1.09006 * 109.46343 * 291.93149 * 14 13 2 34 34 H 1.08997 * 108.81158 * 318.37116 * 17 15 13 35 35 H 1.08994 * 108.81080 * 76.64719 * 17 15 13 36 36 H 1.08998 * 108.87353 * 197.50274 * 18 17 15 37 37 H 1.09002 * 108.79411 * 79.00762 * 18 17 15 38 38 H 1.08995 * 109.62600 * 334.42847 * 19 18 17 39 39 H 1.09008 * 109.62503 * 213.85890 * 19 18 17 40 40 H 1.09001 * 108.89856 * 159.26280 * 20 19 18 41 41 H 1.08999 * 108.89330 * 40.77572 * 20 19 18 42 42 H 1.08992 * 108.89583 * 301.17647 * 21 20 19 43 43 H 1.09005 * 108.89231 * 182.69035 * 21 20 19 44 44 H 1.09003 * 109.46663 * 66.61886 * 24 22 15 45 45 H 1.08998 * 109.46740 * 186.61488 * 24 22 15 46 46 H 1.09001 * 109.47555 * 306.61800 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6021 0.0326 -2.4784 6 1 0.9636 0.8983 -2.3821 7 6 2.0166 -0.3830 -3.7261 8 7 2.7936 -1.4374 -3.8434 9 14 1.4743 0.5519 -5.2498 10 1 2.0507 -0.0924 -6.4571 11 1 1.9484 1.9565 -5.1636 12 1 -0.0079 0.5344 -5.3399 13 7 2.0197 -0.6925 1.1994 14 6 3.4837 -0.8114 1.1779 15 6 1.5645 -0.0152 2.4209 16 1 0.4921 0.1646 2.3452 17 6 2.2882 1.3398 2.5389 18 6 2.2220 1.9308 3.9602 19 6 0.8650 1.7670 4.5893 20 6 0.8691 0.4772 5.4350 21 6 0.6883 -0.7180 4.6244 22 6 1.8256 -0.9120 3.6008 23 1 2.7789 -0.6472 4.0581 24 6 1.8594 -2.3706 3.1403 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6314 -1.7314 -1.2778 29 1 3.1285 -0.7701 -1.2215 30 1 3.0755 -1.9226 -3.0523 31 1 3.9253 0.1688 0.9985 32 1 3.8312 -1.1966 2.1365 33 1 3.7809 -1.4949 0.3824 34 1 3.3339 1.2050 2.2625 35 1 1.8311 2.0440 1.8438 36 1 2.4627 2.9927 3.9120 37 1 2.9626 1.4297 4.5836 38 1 0.1068 1.6915 3.8098 39 1 0.6522 2.6237 5.2290 40 1 0.0635 0.5325 6.1671 41 1 1.8195 0.4048 5.9636 42 1 -0.2586 -0.6421 4.0900 43 1 0.6522 -1.5875 5.2809 44 1 2.7238 -2.5279 2.4951 45 1 1.9309 -3.0244 4.0094 46 1 0.9476 -2.5986 2.5881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695811931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:54 Heat of formation + Delta-G solvation = -34.963420 kcal Electronic energy + Delta-G solvation = -20621.634780 eV Core-core repulsion = 17930.618780 eV Total energy + Delta-G solvation = -2691.015999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21424 -38.13200 -35.59274 -34.27128 -33.20290 -31.15666 -29.37344 -28.16411 -26.43906 -25.59519 -24.21729 -23.71171 -21.50383 -21.12117 -19.23626 -18.92736 -17.08504 -16.63753 -16.13052 -15.69172 -15.63498 -15.57095 -15.15845 -14.81378 -14.32502 -14.04638 -13.75117 -13.71569 -13.46999 -13.31344 -13.06968 -12.98909 -12.58879 -12.50274 -12.36073 -12.28604 -11.97401 -11.84587 -11.78838 -11.57082 -11.48859 -11.22230 -11.16980 -11.06785 -10.84400 -10.62052 -10.51218 -9.07455 -8.65762 -6.34732 1.51219 1.59854 1.78778 2.56423 3.07567 3.18914 3.61099 3.77920 4.03194 4.09919 4.18499 4.20224 4.23995 4.27399 4.41345 4.48031 4.51311 4.54475 4.58133 4.65290 4.80479 4.83874 4.88223 4.98132 5.00725 5.02821 5.09379 5.14776 5.21370 5.24683 5.27826 5.28244 5.31735 5.34811 5.39416 5.44928 5.51357 5.57550 5.61150 5.70685 5.95336 6.21015 6.28459 6.38041 6.62609 7.46333 8.74698 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.033861 B = 0.005231 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.704526 B = 5351.081685 C = 5634.178740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.102 3.898 3 H 0.017 0.983 4 C 0.026 3.974 5 C -0.608 4.608 6 H 0.051 0.949 7 C -0.039 4.039 8 N -0.939 5.939 9 Si 1.115 2.885 10 H -0.284 1.284 11 H -0.270 1.270 12 H -0.269 1.269 13 N -0.532 5.532 14 C 0.028 3.972 15 C 0.088 3.912 16 H 0.076 0.924 17 C -0.150 4.150 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.072 4.072 23 H 0.071 0.929 24 C -0.127 4.127 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.062 0.938 28 H -0.016 1.016 29 H -0.010 1.010 30 H 0.253 0.747 31 H 0.016 0.984 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 4.726 19.709 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.006 4.006 3 H 0.035 0.965 4 C -0.011 4.011 5 C -0.646 4.646 6 H 0.069 0.931 7 C -0.236 4.236 8 N -0.577 5.577 9 Si 0.937 3.063 10 H -0.210 1.210 11 H -0.196 1.196 12 H -0.194 1.194 13 N -0.254 5.254 14 C -0.120 4.120 15 C -0.020 4.020 16 H 0.094 0.906 17 C -0.189 4.189 18 C -0.143 4.143 19 C -0.156 4.156 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.091 4.091 23 H 0.089 0.911 24 C -0.184 4.184 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.003 0.997 29 H 0.008 0.992 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.229 4.275 18.065 18.843 hybrid contribution 0.522 0.544 1.074 1.313 sum -2.707 4.819 19.140 19.922 Atomic orbital electron populations 1.21647 0.94273 1.01160 1.00684 1.21372 0.95717 0.94030 0.89511 0.96506 1.19145 0.94168 0.94611 0.93179 1.22417 1.33563 1.14990 0.93623 0.93072 1.27362 0.94184 0.97001 1.05077 1.70906 1.34880 1.19215 1.32698 0.82963 0.76718 0.74756 0.71902 1.20988 1.19561 1.19382 1.62570 1.10303 1.50789 1.01782 1.22387 0.88436 0.99125 1.02004 1.21727 0.99525 0.91189 0.89545 0.90594 1.22606 1.00632 0.97474 0.98227 1.21225 0.98396 1.00272 0.94443 1.21362 0.96750 0.98318 0.99121 1.20469 1.02640 0.93884 0.98065 1.20491 0.97645 0.98928 0.97538 1.20874 0.99254 0.94942 0.94055 0.91080 1.21678 1.01947 0.94940 0.99854 0.93185 0.93548 0.91910 0.99749 0.99186 0.93716 0.96506 0.89334 0.93785 0.92739 0.94161 0.92239 0.91434 0.92777 0.90759 0.91179 0.91614 0.92922 0.91096 0.93121 0.92655 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.79 71.98 0.63 -4.10 16 2 C 0.10 4.37 1.91 44.92 0.09 4.46 16 3 H 0.02 0.77 6.89 -2.39 -0.02 0.75 16 4 C 0.03 1.41 3.53 29.85 0.11 1.52 16 5 C -0.61 -35.22 8.47 25.60 0.22 -35.01 16 6 H 0.05 2.88 6.78 -2.91 -0.02 2.86 16 7 C -0.04 -2.32 5.46 84.66 0.46 -1.85 16 8 N -0.94 -59.71 13.65 21.45 0.29 -59.42 16 9 Si 1.12 51.30 29.90 68.60 2.05 53.35 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.53 -18.98 3.32 -874.45 -2.90 -21.88 16 14 C 0.03 0.99 6.79 127.69 0.87 1.86 16 15 C 0.09 2.48 1.36 44.46 0.06 2.54 16 16 H 0.08 2.23 4.26 -2.39 -0.01 2.22 16 17 C -0.15 -4.04 4.51 31.32 0.14 -3.90 16 18 C -0.11 -2.12 5.32 30.14 0.16 -1.96 16 19 C -0.12 -2.10 5.61 30.20 0.17 -1.93 16 20 C -0.11 -1.80 5.26 28.73 0.15 -1.65 16 21 C -0.11 -2.04 4.68 28.73 0.13 -1.91 16 22 C -0.07 -1.68 1.55 -11.19 -0.02 -1.70 16 23 H 0.07 1.56 6.81 -2.39 -0.02 1.55 16 24 C -0.13 -3.24 8.06 71.98 0.58 -2.66 16 25 H 0.05 2.09 6.74 -2.39 -0.02 2.08 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 2.07 6.19 -2.39 -0.01 2.05 16 28 H -0.02 -0.93 8.12 -2.38 -0.02 -0.95 16 29 H -0.01 -0.58 6.05 -2.39 -0.01 -0.59 16 30 H 0.25 16.44 7.20 -92.71 -0.67 15.77 16 31 H 0.02 0.60 6.48 -2.39 -0.02 0.58 16 32 H 0.09 2.55 5.73 -2.39 -0.01 2.53 16 33 H 0.04 1.75 6.65 -2.38 -0.02 1.73 16 34 H 0.05 1.57 5.58 -2.39 -0.01 1.56 16 35 H 0.04 1.21 7.39 -2.39 -0.02 1.19 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.25 6.63 -2.39 -0.02 1.24 16 38 H 0.05 1.10 6.97 -2.39 -0.02 1.08 16 39 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.97 7.47 -2.39 -0.02 0.95 16 42 H 0.05 1.08 7.47 -2.39 -0.02 1.07 16 43 H 0.07 1.19 7.89 -2.38 -0.02 1.17 16 44 H 0.05 1.44 5.31 -2.39 -0.01 1.42 16 45 H 0.05 1.17 8.02 -2.39 -0.02 1.15 16 46 H 0.04 1.20 8.11 -2.39 -0.02 1.18 16 Total: -1.00 -64.82 320.82 4.23 -60.59 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.03 Total: 13.63 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 3.75 Total: -46.27 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.61 Total: -81.30 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -64.82 4.23 -60.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.630 kcal (2) G-P(sol) polarization free energy of solvation -64.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds