Wall clock time and date at job start Mon Mar 30 2020 07:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53005 * 109.47146 * 119.99818 * 2 1 3 5 5 N 1.46902 * 109.46778 * 179.44867 * 4 2 1 6 6 C 1.46898 * 110.99663 * 162.29173 * 5 4 2 7 7 H 1.09002 * 109.47312 * 173.74808 * 6 5 4 8 8 C 1.53000 * 109.47266 * 53.74742 * 6 5 4 9 9 C 1.52999 * 109.47221 * 293.75018 * 6 5 4 10 10 C 1.50703 * 109.46944 * 295.44714 * 9 6 5 11 11 H 1.07994 * 119.99794 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99617 * 180.02562 * 10 9 6 13 13 N 1.31511 * 120.00192 * 359.72208 * 12 10 9 14 14 Si 1.86799 * 119.99509 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47226 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47180 * 119.99936 * 14 12 10 17 17 H 1.48494 * 109.47160 * 239.99800 * 14 12 10 18 18 C 1.46893 * 110.99878 * 286.24343 * 5 4 2 19 19 C 1.54268 * 110.03203 * 192.40802 * 18 5 4 20 20 C 1.54885 * 104.19490 * 217.10798 * 19 18 5 21 21 C 1.54894 * 102.75159 * 37.94126 * 20 19 18 22 22 C 1.53873 * 110.03129 * 75.24369 * 18 5 4 23 23 H 1.09000 * 109.47017 * 300.00293 * 1 2 3 24 24 H 1.08997 * 109.47398 * 60.00465 * 1 2 3 25 25 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99706 * 2 1 3 27 27 H 1.09003 * 109.47399 * 183.70700 * 3 2 1 28 28 H 1.09009 * 109.46884 * 303.69980 * 3 2 1 29 29 H 1.09001 * 109.47554 * 63.69885 * 3 2 1 30 30 H 1.08997 * 109.47189 * 59.44553 * 4 2 1 31 31 H 1.09003 * 109.47007 * 299.44602 * 4 2 1 32 32 H 1.08997 * 109.47341 * 299.99966 * 8 6 5 33 33 H 1.08998 * 109.46887 * 59.99836 * 8 6 5 34 34 H 1.09005 * 109.47497 * 179.97438 * 8 6 5 35 35 H 1.09008 * 109.47086 * 175.45143 * 9 6 5 36 36 H 1.08997 * 109.47318 * 55.44992 * 9 6 5 37 37 H 0.97001 * 120.00032 * 180.02562 * 13 12 10 38 38 H 1.09002 * 110.02150 * 313.84937 * 18 5 4 39 39 H 1.09007 * 110.48452 * 335.78203 * 19 18 5 40 40 H 1.09000 * 110.48578 * 98.42790 * 19 18 5 41 41 H 1.09003 * 110.75809 * 279.62784 * 20 19 18 42 42 H 1.09007 * 110.91532 * 156.32888 * 20 19 18 43 43 H 1.09003 * 110.48716 * 203.37734 * 21 20 19 44 44 H 1.08997 * 110.59357 * 80.79374 * 21 20 19 45 45 H 1.09002 * 110.02946 * 238.56756 * 22 18 5 46 46 H 1.09002 * 110.03257 * 359.97438 * 22 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5090 -0.7327 1.2426 6 6 4.0392 -1.0245 2.5811 7 1 5.1221 -1.1368 2.5265 8 6 3.4178 -2.3210 3.1044 9 6 3.6929 0.1257 3.5287 10 6 4.3962 1.3791 3.0754 11 1 5.0267 1.3575 2.1989 12 6 4.2347 2.5534 3.7798 13 7 3.4625 2.5809 4.8440 14 14 5.1070 4.1068 3.2183 15 1 5.9055 3.8136 2.0011 16 1 4.1016 5.1555 2.9106 17 1 6.0079 4.5861 4.2971 18 6 4.0234 -1.6885 0.2528 19 6 5.5335 -1.9149 0.4719 20 6 6.1088 -2.0518 -0.9596 21 6 5.2867 -1.0108 -1.7594 22 6 3.8665 -1.1137 -1.1659 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1280 1.4433 -0.0664 28 1 1.6235 1.9751 -0.8551 29 1 1.7318 1.9369 0.9213 30 1 1.6686 -1.7460 1.2543 31 1 1.6848 -0.2016 2.1393 32 1 2.3350 -2.2088 3.1591 33 1 3.6645 -3.1404 2.4293 34 1 3.8116 -2.5378 4.0975 35 1 4.0150 -0.1264 4.5391 36 1 2.6156 0.2907 3.5214 37 1 3.3486 3.4071 5.3393 38 1 3.4877 -2.6343 0.3338 39 1 5.9776 -1.0595 0.9813 40 1 5.7036 -2.8292 1.0405 41 1 5.9425 -3.0565 -1.3483 42 1 7.1699 -1.8028 -0.9780 43 1 5.2767 -1.2654 -2.8193 44 1 5.6900 -0.0089 -1.6125 45 1 3.2553 -1.7810 -1.7736 46 1 3.4083 -0.1257 -1.1200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:21 Heat of formation + Delta-G solvation = -14.482027 kcal Electronic energy + Delta-G solvation = -20945.763172 eV Core-core repulsion = 18255.635313 eV Total energy + Delta-G solvation = -2690.127859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39674 -35.98534 -34.76906 -32.51530 -30.16993 -28.46038 -27.23569 -27.05661 -26.48769 -24.41961 -22.87334 -20.67660 -20.04430 -19.33633 -18.08073 -16.10083 -15.83533 -15.52800 -14.62317 -14.48247 -14.05676 -13.77125 -13.29306 -12.94468 -12.76666 -12.67206 -12.28651 -12.00270 -11.69106 -11.58515 -11.36882 -11.12227 -10.90441 -10.81306 -10.68291 -10.61663 -10.58132 -10.50302 -10.37526 -10.33053 -10.24748 -10.05141 -9.64000 -9.56499 -9.05886 -8.86251 -8.20582 -7.34356 -5.84309 -3.80854 3.39830 3.47800 3.52733 4.56921 4.60919 4.90556 4.97726 5.21357 5.38723 5.48308 5.52787 5.64673 5.71294 5.79241 5.81370 5.84846 5.92948 5.94848 5.99926 6.03656 6.11364 6.14854 6.15737 6.21397 6.26275 6.35474 6.37522 6.44532 6.49822 6.54140 6.60498 6.65802 6.66909 6.70151 6.78471 6.94589 7.10108 7.24697 7.63871 7.79269 8.03958 8.15272 8.19138 8.64530 9.25177 9.80264 11.27850 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.008291 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.272437 B = 3376.422409 C = 3665.983994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.134 4.134 4 C 0.063 3.937 5 N -0.500 5.500 6 C 0.080 3.920 7 H 0.076 0.924 8 C -0.182 4.182 9 C 0.030 3.970 10 C -0.480 4.480 11 H 0.060 0.940 12 C 0.050 3.950 13 N -0.904 5.904 14 Si 0.884 3.116 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.082 3.918 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.131 4.131 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.015 0.985 36 H 0.018 0.982 37 H 0.255 0.745 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -8.788 -11.050 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.191 4.191 4 C -0.065 4.065 5 N -0.222 5.222 6 C -0.027 4.027 7 H 0.094 0.906 8 C -0.241 4.241 9 C -0.007 4.007 10 C -0.519 4.519 11 H 0.079 0.921 12 C -0.148 4.148 13 N -0.546 5.546 14 Si 0.713 3.287 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.216 1.216 18 C -0.027 4.027 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.158 4.158 22 C -0.169 4.169 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.739 -8.196 -11.052 13.779 hybrid contribution 0.046 0.042 0.103 0.121 sum -0.693 -8.153 -10.948 13.668 Atomic orbital electron populations 1.21833 0.96445 1.00656 1.01447 1.21456 0.94067 0.97879 0.98754 1.21688 1.02499 0.94426 1.00477 1.22172 0.88285 0.97152 0.98932 1.62226 1.06703 1.47579 1.05725 1.22025 0.98637 0.93875 0.88208 0.90588 1.22538 1.01341 0.99393 1.00848 1.19208 0.97090 0.91646 0.92723 1.21163 1.26904 0.93409 1.10407 0.92127 1.24979 0.95841 0.98728 0.95296 1.69971 1.39246 1.26791 1.18566 0.86656 0.79518 0.84024 0.78517 1.19774 1.21416 1.21573 1.22248 0.94753 0.92947 0.92777 1.22568 0.95203 1.01790 0.96388 1.22451 0.99061 0.98622 0.95997 1.22319 0.95922 0.99448 0.98141 1.22649 0.96546 1.02897 0.94764 0.92725 0.93237 0.93646 0.90731 0.90885 0.95008 0.92277 0.96445 0.89757 0.93131 0.94376 0.92847 0.96666 0.96350 0.93516 0.95203 0.89547 0.92542 0.92373 0.92035 0.92708 0.91476 0.93099 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.19 37.16 0.34 -1.66 16 2 C -0.10 -1.60 2.38 -90.62 -0.22 -1.82 16 3 C -0.13 -2.32 8.38 37.16 0.31 -2.01 16 4 C 0.06 1.10 3.07 -3.82 -0.01 1.09 16 5 N -0.50 -9.10 3.30 -217.39 -0.72 -9.82 16 6 C 0.08 1.60 1.88 -67.71 -0.13 1.47 16 7 H 0.08 1.54 5.62 -51.93 -0.29 1.25 16 8 C -0.18 -3.18 8.53 37.16 0.32 -2.86 16 9 C 0.03 0.76 4.39 -27.88 -0.12 0.63 16 10 C -0.48 -13.09 8.83 -34.44 -0.30 -13.40 16 11 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 12 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 13 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 14 Si 0.88 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 18 C 0.08 1.27 2.12 -66.60 -0.14 1.13 16 19 C -0.12 -1.81 5.01 -25.07 -0.13 -1.93 16 20 C -0.12 -1.55 6.91 -24.74 -0.17 -1.72 16 21 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 22 C -0.13 -1.84 4.70 -25.62 -0.12 -1.96 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.09 4.71 -51.93 -0.24 0.84 16 27 H 0.07 1.39 6.69 -51.93 -0.35 1.04 16 28 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.29 7.02 -51.93 -0.36 -0.07 16 31 H 0.08 1.72 5.86 -51.93 -0.30 1.42 16 32 H 0.05 0.88 6.73 -51.93 -0.35 0.53 16 33 H 0.04 0.60 7.13 -51.93 -0.37 0.23 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.02 0.49 6.11 -51.93 -0.32 0.17 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.03 0.47 7.20 -51.93 -0.37 0.10 16 39 H 0.09 1.48 6.71 -51.93 -0.35 1.13 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.65 7.99 -51.93 -0.41 0.24 16 46 H 0.10 1.48 3.77 -51.93 -0.20 1.28 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -28.30 334.40 -9.14 -37.43 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.54 Total: 0.18 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -0.64 Total: -23.45 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.02 Total: -36.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.30 -9.14 -37.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.953 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds