Wall clock time and date at job start Mon Mar 30 2020 07:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 C 1.53005 * 109.47146 * 119.99818 * 2 1 3 5 5 N 1.46902 * 109.46778 * 179.44867 * 4 2 1 6 6 C 1.46898 * 110.99663 * 162.29173 * 5 4 2 7 7 H 1.09002 * 109.47312 * 173.74808 * 6 5 4 8 8 C 1.53000 * 109.47266 * 53.74742 * 6 5 4 9 9 C 1.52999 * 109.47221 * 293.75018 * 6 5 4 10 10 C 1.50703 * 109.46944 * 295.44714 * 9 6 5 11 11 H 1.07994 * 119.99794 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99617 * 180.02562 * 10 9 6 13 13 N 1.31511 * 120.00192 * 359.72208 * 12 10 9 14 14 Si 1.86799 * 119.99509 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47226 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47180 * 119.99936 * 14 12 10 17 17 H 1.48494 * 109.47160 * 239.99800 * 14 12 10 18 18 C 1.46893 * 110.99878 * 286.24343 * 5 4 2 19 19 C 1.54268 * 110.03203 * 192.40802 * 18 5 4 20 20 C 1.54885 * 104.19490 * 217.10798 * 19 18 5 21 21 C 1.54894 * 102.75159 * 37.94126 * 20 19 18 22 22 C 1.53873 * 110.03129 * 75.24369 * 18 5 4 23 23 H 1.09000 * 109.47017 * 300.00293 * 1 2 3 24 24 H 1.08997 * 109.47398 * 60.00465 * 1 2 3 25 25 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99706 * 2 1 3 27 27 H 1.09003 * 109.47399 * 183.70700 * 3 2 1 28 28 H 1.09009 * 109.46884 * 303.69980 * 3 2 1 29 29 H 1.09001 * 109.47554 * 63.69885 * 3 2 1 30 30 H 1.08997 * 109.47189 * 59.44553 * 4 2 1 31 31 H 1.09003 * 109.47007 * 299.44602 * 4 2 1 32 32 H 1.08997 * 109.47341 * 299.99966 * 8 6 5 33 33 H 1.08998 * 109.46887 * 59.99836 * 8 6 5 34 34 H 1.09005 * 109.47497 * 179.97438 * 8 6 5 35 35 H 1.09008 * 109.47086 * 175.45143 * 9 6 5 36 36 H 1.08997 * 109.47318 * 55.44992 * 9 6 5 37 37 H 0.97001 * 120.00032 * 180.02562 * 13 12 10 38 38 H 1.09002 * 110.02150 * 313.84937 * 18 5 4 39 39 H 1.09007 * 110.48452 * 335.78203 * 19 18 5 40 40 H 1.09000 * 110.48578 * 98.42790 * 19 18 5 41 41 H 1.09003 * 110.75809 * 279.62784 * 20 19 18 42 42 H 1.09007 * 110.91532 * 156.32888 * 20 19 18 43 43 H 1.09003 * 110.48716 * 203.37734 * 21 20 19 44 44 H 1.08997 * 110.59357 * 80.79374 * 21 20 19 45 45 H 1.09002 * 110.02946 * 238.56756 * 22 18 5 46 46 H 1.09002 * 110.03257 * 359.97438 * 22 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5090 -0.7327 1.2426 6 6 4.0392 -1.0245 2.5811 7 1 5.1221 -1.1368 2.5265 8 6 3.4178 -2.3210 3.1044 9 6 3.6929 0.1257 3.5287 10 6 4.3962 1.3791 3.0754 11 1 5.0267 1.3575 2.1989 12 6 4.2347 2.5534 3.7798 13 7 3.4625 2.5809 4.8440 14 14 5.1070 4.1068 3.2183 15 1 5.9055 3.8136 2.0011 16 1 4.1016 5.1555 2.9106 17 1 6.0079 4.5861 4.2971 18 6 4.0234 -1.6885 0.2528 19 6 5.5335 -1.9149 0.4719 20 6 6.1088 -2.0518 -0.9596 21 6 5.2867 -1.0108 -1.7594 22 6 3.8665 -1.1137 -1.1659 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1280 1.4433 -0.0664 28 1 1.6235 1.9751 -0.8551 29 1 1.7318 1.9369 0.9213 30 1 1.6686 -1.7460 1.2543 31 1 1.6848 -0.2016 2.1393 32 1 2.3350 -2.2088 3.1591 33 1 3.6645 -3.1404 2.4293 34 1 3.8116 -2.5378 4.0975 35 1 4.0150 -0.1264 4.5391 36 1 2.6156 0.2907 3.5214 37 1 3.3486 3.4071 5.3393 38 1 3.4877 -2.6343 0.3338 39 1 5.9776 -1.0595 0.9813 40 1 5.7036 -2.8292 1.0405 41 1 5.9425 -3.0565 -1.3483 42 1 7.1699 -1.8028 -0.9780 43 1 5.2767 -1.2654 -2.8193 44 1 5.6900 -0.0089 -1.6125 45 1 3.2553 -1.7810 -1.7736 46 1 3.4083 -0.1257 -1.1200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834060.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:20 Heat of formation + Delta-G solvation = -28.783697 kcal Electronic energy + Delta-G solvation = -20946.383339 eV Core-core repulsion = 18255.635313 eV Total energy + Delta-G solvation = -2690.748026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74017 -37.24171 -36.24290 -34.56468 -31.72831 -29.67719 -28.99359 -28.32724 -27.78494 -25.87228 -24.81326 -21.97564 -21.32421 -20.58293 -19.53488 -18.28324 -17.13653 -16.79830 -16.47729 -15.86757 -15.57842 -14.96504 -14.62935 -14.49431 -14.15806 -13.96192 -13.81733 -13.59411 -13.38216 -13.08343 -12.92019 -12.67459 -12.49605 -12.36976 -12.18567 -12.05081 -11.90228 -11.84531 -11.74662 -11.71263 -11.48235 -11.31266 -11.12171 -11.03390 -10.99369 -10.66811 -10.41202 -8.76617 -8.06029 -6.08586 1.39567 1.41411 1.53512 2.48776 3.16642 3.32251 3.79542 3.87540 4.02696 4.18653 4.22829 4.29050 4.42133 4.48123 4.57528 4.60574 4.67784 4.72411 4.74632 4.84531 4.89567 4.92224 4.98356 4.99918 5.10188 5.12666 5.16246 5.17553 5.19498 5.24698 5.28819 5.30223 5.33596 5.40878 5.50253 5.52581 5.60197 5.66317 5.77734 5.82442 5.95837 6.40746 6.60861 6.70729 7.05093 7.56308 9.06460 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.008291 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.272437 B = 3376.422409 C = 3665.983994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.125 4.125 4 C 0.067 3.933 5 N -0.514 5.514 6 C 0.090 3.910 7 H 0.073 0.927 8 C -0.172 4.172 9 C 0.038 3.962 10 C -0.479 4.479 11 H 0.057 0.943 12 C -0.004 4.004 13 N -0.942 5.942 14 Si 0.947 3.053 15 H -0.264 1.264 16 H -0.286 1.286 17 H -0.285 1.285 18 C 0.080 3.920 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.130 4.130 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.021 0.979 30 H 0.031 0.969 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.051 0.949 35 H -0.015 1.015 36 H -0.006 1.006 37 H 0.256 0.744 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 -10.030 -13.735 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.183 4.183 4 C -0.061 4.061 5 N -0.237 5.237 6 C -0.019 4.019 7 H 0.091 0.909 8 C -0.231 4.231 9 C 0.001 3.999 10 C -0.518 4.518 11 H 0.075 0.925 12 C -0.199 4.199 13 N -0.585 5.585 14 Si 0.774 3.226 15 H -0.188 1.188 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.028 4.028 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.167 4.167 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.003 0.997 36 H 0.012 0.988 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.408 -9.446 -13.750 16.687 hybrid contribution -0.058 0.413 0.949 1.036 sum -0.466 -9.033 -12.802 15.674 Atomic orbital electron populations 1.21800 0.94811 1.01806 1.01578 1.21441 0.95376 0.96310 0.98378 1.21587 1.01260 0.95924 0.99509 1.22097 0.88005 0.97574 0.98376 1.62150 1.07107 1.49266 1.05176 1.21700 0.98691 0.92942 0.88520 0.90922 1.22403 1.00789 0.98645 1.01278 1.19052 0.95127 0.93199 0.92527 1.21405 1.26260 0.94347 1.09790 0.92464 1.25763 0.96717 1.01987 0.95472 1.70101 1.40901 1.27568 1.19886 0.85660 0.78450 0.80185 0.78351 1.18809 1.21224 1.21113 1.22368 0.95074 0.92607 0.92760 1.22538 0.94716 1.00848 0.97983 1.22430 0.99246 0.99609 0.94061 1.22307 0.95012 0.98789 0.99548 1.22631 0.97671 1.02481 0.93965 0.94366 0.91359 0.91996 0.88652 0.92879 0.92639 0.95950 0.95112 0.93631 0.93521 0.91880 0.92940 0.99665 0.98797 0.93560 0.94359 0.92507 0.91766 0.90362 0.91406 0.90349 0.93091 0.90924 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.19 71.98 0.66 -3.00 16 2 C -0.10 -2.89 2.38 -10.79 -0.03 -2.92 16 3 C -0.13 -4.37 8.38 71.98 0.60 -3.76 16 4 C 0.07 2.36 3.07 86.30 0.26 2.63 16 5 N -0.51 -18.66 3.30 -841.69 -2.78 -21.44 16 6 C 0.09 3.64 1.88 44.92 0.08 3.72 16 7 H 0.07 2.99 5.62 -2.39 -0.01 2.98 16 8 C -0.17 -5.93 8.53 71.98 0.61 -5.31 16 9 C 0.04 1.99 4.39 29.85 0.13 2.12 16 10 C -0.48 -27.07 8.83 25.60 0.23 -26.84 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 12 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 13 N -0.94 -58.42 13.29 21.45 0.28 -58.14 16 14 Si 0.95 46.06 29.54 68.60 2.03 48.08 16 15 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 17 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 18 C 0.08 2.33 2.12 45.64 0.10 2.43 16 19 C -0.12 -3.44 5.01 31.67 0.16 -3.28 16 20 C -0.12 -2.56 6.91 31.89 0.22 -2.34 16 21 C -0.12 -2.73 6.83 31.67 0.22 -2.51 16 22 C -0.13 -3.28 4.70 31.32 0.15 -3.14 16 23 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.10 2.51 4.71 -2.39 -0.01 2.50 16 27 H 0.05 2.04 6.69 -2.39 -0.02 2.02 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 0.99 7.02 -2.39 -0.02 0.97 16 31 H 0.05 1.95 5.86 -2.39 -0.01 1.93 16 32 H 0.05 1.62 6.73 -2.39 -0.02 1.61 16 33 H 0.06 1.85 7.13 -2.39 -0.02 1.83 16 34 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 35 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 36 H -0.01 -0.35 6.11 -2.39 -0.01 -0.37 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.04 1.07 7.20 -2.39 -0.02 1.05 16 39 H 0.06 1.93 6.71 -2.38 -0.02 1.91 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.41 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.54 7.99 -2.39 -0.02 1.52 16 46 H 0.08 2.36 3.77 -2.39 -0.01 2.35 16 Total: -1.00 -62.98 334.40 4.31 -58.67 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.91 Total: 14.78 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 3.86 Total: -41.96 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.49 Total: -79.57 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -62.98 4.31 -58.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834060.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.889 kcal (2) G-P(sol) polarization free energy of solvation -62.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds