Wall clock time and date at job start Mon Mar 30 2020 07:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47193 * 2 1 4 4 C 1.53008 * 109.46802 * 119.99861 * 2 1 3 5 5 N 1.46892 * 109.47096 * 173.66062 * 4 2 1 6 6 C 1.46893 * 111.00108 * 211.43450 * 5 4 2 7 7 H 1.09002 * 109.47577 * 179.80506 * 6 5 4 8 8 C 1.52996 * 109.47275 * 299.80107 * 6 5 4 9 9 C 1.53001 * 109.47348 * 59.80252 * 6 5 4 10 10 C 1.50697 * 109.47301 * 64.99879 * 9 6 5 11 11 H 1.08001 * 119.99603 * 0.02562 * 10 9 6 12 12 C 1.37872 * 120.00355 * 180.02562 * 10 9 6 13 13 N 1.31518 * 119.99942 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00277 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47060 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47595 * 119.99807 * 14 12 10 17 17 H 1.48503 * 109.46821 * 239.99855 * 14 12 10 18 18 C 1.46901 * 110.99971 * 87.47649 * 5 4 2 19 19 C 1.54899 * 110.48627 * 160.21631 * 18 5 4 20 20 C 1.54882 * 102.74618 * 203.38339 * 19 18 5 21 21 C 1.54261 * 104.20133 * 37.94551 * 20 19 18 22 22 C 1.53876 * 106.59728 * 336.38593 * 21 20 19 23 23 H 1.09000 * 109.47534 * 300.00409 * 1 2 3 24 24 H 1.09000 * 109.46860 * 60.00195 * 1 2 3 25 25 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47220 * 239.99628 * 2 1 3 27 27 H 1.08997 * 109.46821 * 309.03828 * 3 2 1 28 28 H 1.09003 * 109.47104 * 69.03272 * 3 2 1 29 29 H 1.08998 * 109.46674 * 189.03053 * 3 2 1 30 30 H 1.08997 * 109.47031 * 53.66104 * 4 2 1 31 31 H 1.09000 * 109.47007 * 293.66215 * 4 2 1 32 32 H 1.08998 * 109.47213 * 50.97921 * 8 6 5 33 33 H 1.09004 * 109.47832 * 170.98213 * 8 6 5 34 34 H 1.09001 * 109.47120 * 290.98405 * 8 6 5 35 35 H 1.09005 * 109.47151 * 184.99962 * 9 6 5 36 36 H 1.09000 * 109.46736 * 304.99745 * 9 6 5 37 37 H 0.96994 * 120.00152 * 180.02562 * 13 12 10 38 38 H 1.08998 * 110.54592 * 282.82945 * 18 5 4 39 39 H 1.08994 * 110.75350 * 85.06640 * 19 18 5 40 40 H 1.08996 * 110.75190 * 321.69642 * 19 18 5 41 41 H 1.08999 * 110.48923 * 279.26145 * 20 19 18 42 42 H 1.09002 * 110.48272 * 156.62609 * 20 19 18 43 43 H 1.09000 * 110.03340 * 95.67022 * 21 20 19 44 44 H 1.09001 * 110.03059 * 217.05651 * 21 20 19 45 45 H 1.09004 * 110.03215 * 119.28525 * 22 21 20 46 46 H 1.08996 * 110.03256 * 240.67226 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5009 -0.8552 1.1754 6 6 3.9522 -2.0792 1.8505 7 1 5.0371 -2.1554 1.7778 8 6 3.5421 -2.0300 3.3236 9 6 3.3096 -3.2966 1.1826 10 6 3.8099 -3.4149 -0.2339 11 1 4.5160 -2.6942 -0.6192 12 6 3.3663 -4.4432 -1.0381 13 7 2.5069 -5.3212 -0.5688 14 14 3.9871 -4.5904 -2.7938 15 1 4.9399 -3.4869 -3.0760 16 1 4.6744 -5.8951 -2.9682 17 1 2.8400 -4.5057 -3.7331 18 6 4.1670 0.3296 1.7327 19 6 5.6329 0.0004 2.1096 20 6 5.9600 1.0725 3.1785 21 6 4.6549 1.2089 3.9895 22 6 3.5148 0.7366 3.0702 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.5509 2.0008 -0.7982 28 1 1.8144 1.9076 0.9596 29 1 3.1180 1.4467 -0.1613 30 1 1.5869 -1.7109 1.3079 31 1 1.7722 -0.1461 2.1357 32 1 2.4806 -1.7939 3.3976 33 1 3.7321 -2.9985 3.7864 34 1 4.1216 -1.2624 3.8366 35 1 3.5734 -4.1969 1.7376 36 1 2.2261 -3.1779 1.1766 37 1 2.1951 -6.0449 -1.1344 38 1 4.1320 1.1570 1.0240 39 1 6.2871 0.1054 1.2442 40 1 5.7073 -1.0016 2.5322 41 1 6.2146 2.0198 2.7032 42 1 6.7743 0.7356 3.8199 43 1 4.7011 0.5814 4.8796 44 1 4.4992 2.2495 4.2741 45 1 3.0077 -0.1201 3.5143 46 1 2.8050 1.5478 2.9087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:25 Heat of formation + Delta-G solvation = -13.560805 kcal Electronic energy + Delta-G solvation = -20948.016981 eV Core-core repulsion = 18257.929068 eV Total energy + Delta-G solvation = -2690.087912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26420 -37.13688 -36.08284 -34.44603 -31.78325 -29.98457 -29.22497 -28.43002 -27.61590 -25.79964 -24.75794 -22.22020 -21.28733 -20.42158 -19.43096 -18.33104 -17.49394 -16.99014 -16.39822 -15.91944 -15.52484 -15.09337 -14.74907 -14.41205 -14.17671 -14.02731 -13.61044 -13.56120 -13.19350 -13.06481 -12.95876 -12.67219 -12.59972 -12.46729 -12.33450 -12.05863 -12.00206 -11.90372 -11.79156 -11.60477 -11.50855 -11.25399 -11.19596 -10.97973 -10.76204 -10.58381 -10.39721 -8.72099 -8.08265 -6.11854 1.39502 1.40945 1.53707 2.47723 3.17036 3.29922 3.79915 3.90626 4.02888 4.16030 4.20442 4.29576 4.39911 4.48320 4.55936 4.62344 4.64936 4.67504 4.76202 4.78906 4.84447 4.86808 4.94059 4.97427 5.00924 5.08462 5.13660 5.16843 5.20646 5.22444 5.28900 5.30941 5.36583 5.43221 5.46638 5.54964 5.56286 5.66731 5.72501 5.78473 5.95527 6.39474 6.62087 6.70610 7.02506 7.53618 9.03964 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.007686 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.403649 B = 3642.022816 C = 4240.634705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.134 4.134 4 C 0.061 3.939 5 N -0.521 5.521 6 C 0.092 3.908 7 H 0.073 0.927 8 C -0.181 4.181 9 C 0.033 3.967 10 C -0.490 4.490 11 H 0.056 0.944 12 C -0.004 4.004 13 N -0.940 5.940 14 Si 0.951 3.049 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.285 1.285 18 C 0.074 3.926 19 C -0.138 4.138 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.172 4.172 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.082 0.918 35 H -0.014 1.014 36 H -0.001 1.001 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 15.650 7.413 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.191 4.191 4 C -0.066 4.066 5 N -0.243 5.243 6 C -0.016 4.016 7 H 0.091 0.909 8 C -0.240 4.240 9 C -0.004 4.004 10 C -0.529 4.529 11 H 0.074 0.926 12 C -0.200 4.200 13 N -0.583 5.583 14 Si 0.778 3.222 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.211 1.211 18 C -0.034 4.034 19 C -0.175 4.175 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.210 4.210 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.005 0.995 36 H 0.017 0.983 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.793 15.470 6.850 17.013 hybrid contribution -0.229 -0.869 -0.287 0.944 sum 1.564 14.601 6.563 16.084 Atomic orbital electron populations 1.21752 0.94815 1.00871 1.02237 1.21015 0.95240 0.96755 0.97867 1.21902 1.01062 0.94605 1.01567 1.22216 0.88208 0.99277 0.96912 1.62031 1.05567 1.01300 1.55370 1.21694 0.99185 0.90266 0.90432 0.90941 1.22810 1.01118 1.01764 0.98271 1.19167 0.94893 0.91711 0.94654 1.21482 1.24182 1.09216 0.98006 0.92566 1.25800 0.95890 0.96043 1.02255 1.70099 1.34193 1.16310 1.37709 0.85598 0.78143 0.77811 0.80692 1.19004 1.20869 1.21075 1.22934 0.93470 0.92803 0.94187 1.22933 0.95681 0.99916 0.99014 1.22308 0.97559 0.98613 0.96862 1.22046 0.94075 1.01447 0.97826 1.23289 0.99012 1.01814 0.96918 0.91636 0.91801 0.94584 0.93763 0.92555 0.92182 0.92500 0.93638 0.92937 0.93133 0.93699 0.89928 0.99539 0.98280 0.93429 0.89060 0.92192 0.91161 0.90885 0.91053 0.92003 0.90773 0.90420 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.18 71.98 0.66 -3.33 16 2 C -0.09 -2.95 3.12 -10.79 -0.03 -2.99 16 3 C -0.13 -3.52 8.04 71.98 0.58 -2.94 16 4 C 0.06 2.19 3.07 86.31 0.26 2.45 16 5 N -0.52 -19.18 4.27 -839.67 -3.58 -22.76 16 6 C 0.09 3.75 1.76 44.92 0.08 3.83 16 7 H 0.07 3.02 5.70 -2.39 -0.01 3.01 16 8 C -0.18 -6.12 7.16 71.98 0.52 -5.61 16 9 C 0.03 1.72 4.29 29.85 0.13 1.85 16 10 C -0.49 -28.12 8.84 25.60 0.23 -27.89 16 11 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 12 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 13 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 14 Si 0.95 46.29 29.54 68.60 2.03 48.32 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 18 C 0.07 2.13 2.54 46.00 0.12 2.25 16 19 C -0.14 -3.75 5.50 31.89 0.18 -3.58 16 20 C -0.12 -2.36 6.83 31.66 0.22 -2.14 16 21 C -0.12 -2.30 6.28 31.32 0.20 -2.10 16 22 C -0.17 -4.14 3.94 31.32 0.12 -4.01 16 23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 28 H 0.06 1.38 7.40 -2.39 -0.02 1.36 16 29 H 0.06 1.57 5.62 -2.39 -0.01 1.56 16 30 H 0.05 1.96 5.28 -2.39 -0.01 1.95 16 31 H 0.05 1.63 5.19 -2.39 -0.01 1.62 16 32 H 0.05 1.70 5.99 -2.39 -0.01 1.68 16 33 H 0.04 1.54 8.11 -2.39 -0.02 1.53 16 34 H 0.08 2.36 4.18 -2.39 -0.01 2.35 16 35 H -0.01 -0.79 8.13 -2.38 -0.02 -0.81 16 36 H 0.00 -0.05 5.79 -2.39 -0.01 -0.06 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.09 2.56 5.20 -2.39 -0.01 2.55 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.12 4.53 -2.39 -0.01 2.11 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.20 7.78 -2.39 -0.02 1.18 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 2.07 3.29 -2.38 -0.01 2.06 16 46 H 0.06 1.44 7.34 -2.39 -0.02 1.42 16 Total: -1.00 -63.49 323.25 3.38 -60.11 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.94 Total: 16.49 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 3.71 Total: -44.00 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.30 Total: -80.92 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -63.49 3.38 -60.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.552 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds