Wall clock time and date at job start Mon Mar 30 2020 07:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46874 * 2 1 4 4 C 1.53002 * 109.47414 * 239.99790 * 2 1 3 5 5 C 1.53000 * 109.47145 * 175.00009 * 4 2 1 6 6 C 1.52999 * 109.47065 * 294.99768 * 5 4 2 7 7 C 1.53004 * 109.47220 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47127 * 60.00065 * 7 6 5 9 9 C 1.52999 * 109.46888 * 300.00431 * 8 7 6 10 10 C 1.52994 * 109.47721 * 59.99785 * 9 8 7 11 11 N 1.46903 * 109.47313 * 119.99795 * 2 1 3 12 12 C 1.46901 * 110.99870 * 261.14469 * 11 2 1 13 13 H 1.09006 * 109.47264 * 326.19675 * 12 11 2 14 14 C 1.52992 * 109.47546 * 86.19662 * 12 11 2 15 15 C 1.52999 * 109.46876 * 206.19761 * 12 11 2 16 16 C 1.50705 * 109.47034 * 65.00344 * 15 12 11 17 17 H 1.08002 * 120.00087 * 359.97438 * 16 15 12 18 18 C 1.37880 * 119.99999 * 179.72458 * 16 15 12 19 19 N 1.31513 * 119.99967 * 180.27007 * 18 16 15 20 20 Si 1.86801 * 119.99796 * 0.27425 * 18 16 15 21 21 H 1.48501 * 109.47473 * 89.99829 * 20 18 16 22 22 H 1.48502 * 109.46571 * 210.00071 * 20 18 16 23 23 H 1.48498 * 109.47176 * 329.99473 * 20 18 16 24 24 H 1.09004 * 109.47373 * 302.93466 * 1 2 3 25 25 H 1.09000 * 109.47333 * 62.93043 * 1 2 3 26 26 H 1.08998 * 109.47051 * 182.93101 * 1 2 3 27 27 H 1.08995 * 109.47063 * 295.00142 * 4 2 1 28 28 H 1.09006 * 109.46725 * 55.00124 * 4 2 1 29 29 H 1.08992 * 109.47422 * 55.00083 * 5 4 2 30 30 H 1.09000 * 109.47386 * 300.00100 * 6 5 4 31 31 H 1.08997 * 109.47286 * 60.00060 * 6 5 4 32 32 H 1.09000 * 109.46745 * 300.00153 * 7 6 5 33 33 H 1.08998 * 109.47315 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47129 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.46743 * 59.99807 * 8 7 6 36 36 H 1.09006 * 109.47048 * 299.99583 * 9 8 7 37 37 H 1.09003 * 109.46768 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47447 * 179.97438 * 10 9 8 39 39 H 1.09006 * 109.47024 * 59.99784 * 10 9 8 40 40 H 1.00901 * 110.99944 * 25.09329 * 11 2 1 41 41 H 1.09000 * 109.47762 * 175.17722 * 14 12 11 42 42 H 1.09000 * 109.47734 * 295.18193 * 14 12 11 43 43 H 1.09000 * 109.46832 * 55.17829 * 14 12 11 44 44 H 1.08992 * 109.47435 * 305.00290 * 15 12 11 45 45 H 1.09002 * 109.46865 * 184.99353 * 15 12 11 46 46 H 0.96997 * 120.00096 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 3.9649 0.8516 -1.5004 7 6 5.4898 0.9596 -1.5654 8 6 6.0096 0.1346 -2.7444 9 6 5.6095 -1.3303 -2.5577 10 6 4.0847 -1.4382 -2.4926 11 7 2.0197 -0.6925 1.1995 12 6 2.3942 0.2682 2.2458 13 1 2.7981 1.1693 1.7842 14 6 1.1587 0.6289 3.0730 15 6 3.4530 -0.3568 3.1565 16 6 4.7141 -0.5991 2.3679 17 1 4.7561 -0.3343 1.3217 18 6 5.8161 -1.1542 2.9833 19 7 6.9184 -1.3607 2.2964 20 14 5.7432 -1.6128 4.7926 21 1 5.2706 -3.0140 4.9296 22 1 7.0968 -1.4863 5.3902 23 1 4.8043 -0.7028 5.4966 24 1 -0.3634 0.5587 0.8625 25 1 -0.3634 0.4677 -0.9151 26 1 -0.3633 -1.0263 0.0525 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2617 -2.1370 29 1 3.9954 -0.9922 -0.3868 30 1 3.5344 1.2305 -2.4273 31 1 3.5942 1.4394 -0.6607 32 1 5.9206 0.5805 -0.6387 33 1 5.7748 2.0032 -1.6980 34 1 7.0960 0.2112 -2.7905 35 1 5.5786 0.5137 -3.6711 36 1 6.0404 -1.7093 -1.6310 37 1 5.9802 -1.9180 -3.3974 38 1 3.7997 -2.4819 -2.3600 39 1 3.6538 -1.0592 -3.4193 40 1 1.3359 -1.3511 1.5413 41 1 1.4516 1.2741 3.9013 42 1 0.4391 1.1511 2.4425 43 1 0.7052 -0.2816 3.4646 44 1 3.0820 -1.3037 3.5485 45 1 3.6662 0.3204 3.9836 46 1 7.6935 -1.7515 2.7292 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695859798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:04 Heat of formation + Delta-G solvation = -44.800584 kcal Electronic energy + Delta-G solvation = -20531.651306 eV Core-core repulsion = 17840.208735 eV Total energy + Delta-G solvation = -2691.442571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.64784 -36.93962 -33.84525 -32.13704 -30.64635 -30.12971 -28.00896 -27.59719 -25.58253 -22.63098 -22.25820 -21.15313 -19.98752 -19.42479 -19.01135 -16.48760 -15.17203 -15.10763 -14.59465 -13.92291 -13.82055 -13.64287 -13.44127 -13.20568 -12.86895 -12.62800 -12.36725 -12.12344 -11.93899 -11.82318 -11.65073 -11.61342 -11.32005 -10.97276 -10.83342 -10.67226 -10.48204 -10.37987 -10.19907 -10.07045 -9.76870 -9.64442 -9.54157 -9.36770 -9.23860 -8.82302 -8.34964 -7.49287 -5.83970 -3.76317 3.40250 3.47778 3.50432 4.60648 4.81600 5.08224 5.30618 5.34163 5.45931 5.50552 5.50697 5.59557 5.70131 5.76153 5.79757 5.85981 5.94381 6.01383 6.02843 6.06979 6.13493 6.16089 6.22381 6.25674 6.26702 6.39683 6.44624 6.49070 6.54030 6.55195 6.61839 6.82495 6.85858 6.87198 6.92827 7.02444 7.06928 7.25003 7.40502 7.46312 7.93576 8.01829 8.21696 8.81093 9.30092 9.80240 11.29225 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.009342 C = 0.006271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.587323 B = 2996.429469 C = 4464.188081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.071 0.929 4 C -0.095 4.095 5 C -0.088 4.088 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.107 4.107 11 N -0.654 5.654 12 C 0.100 3.900 13 H 0.068 0.932 14 C -0.184 4.184 15 C -0.005 4.005 16 C -0.485 4.485 17 H 0.085 0.915 18 C 0.062 3.938 19 N -0.907 5.907 20 Si 0.870 3.130 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.270 1.270 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.329 0.671 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.009 0.991 45 H 0.013 0.987 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 3.033 -7.568 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.133 4.133 5 C -0.106 4.106 6 C -0.140 4.140 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.145 4.145 11 N -0.284 5.284 12 C -0.010 4.010 13 H 0.086 0.914 14 C -0.243 4.243 15 C -0.043 4.043 16 C -0.523 4.523 17 H 0.103 0.897 18 C -0.137 4.137 19 N -0.547 5.547 20 Si 0.698 3.302 21 H -0.208 1.208 22 H -0.219 1.219 23 H -0.195 1.195 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.129 0.871 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.147 0.853 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.031 0.969 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.624 2.903 -7.789 11.978 hybrid contribution -0.877 -0.041 1.336 1.599 sum -9.501 2.861 -6.453 11.836 Atomic orbital electron populations 1.22600 0.98308 1.01549 1.01376 1.21693 0.91191 0.97870 0.92152 0.91128 1.21562 0.96227 0.99979 0.95514 1.21198 0.94394 0.94681 1.00363 1.21486 0.95573 0.97100 0.99842 1.21543 0.96133 0.98548 0.99763 1.21448 0.99718 0.95805 0.97919 1.21518 0.96220 0.96164 1.01865 1.21519 0.95431 0.99558 0.97985 1.60518 1.45150 1.17277 1.05429 1.21633 0.93349 0.94457 0.91521 0.91401 1.22710 0.99733 1.01046 1.00845 1.19624 0.94866 0.95180 0.94627 1.21114 0.93862 1.38946 0.98381 0.89688 1.24977 0.95739 0.96091 0.96929 1.69896 1.02975 1.45979 1.35883 0.86955 0.76790 0.79037 0.87388 1.20799 1.21926 1.19541 0.92928 0.92933 0.92767 0.92504 0.93534 0.87052 0.93998 0.92361 0.89967 0.93416 0.92836 0.93351 0.90789 0.93360 0.92777 0.93613 0.85268 0.92780 0.93848 0.93244 0.97255 0.96930 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.03 37.15 0.34 -1.88 16 2 C 0.08 1.21 2.50 -67.71 -0.17 1.04 16 3 H 0.07 1.12 5.40 -51.93 -0.28 0.83 16 4 C -0.09 -1.40 4.36 -26.73 -0.12 -1.52 16 5 C -0.09 -1.49 2.14 -90.62 -0.19 -1.69 16 6 C -0.10 -1.68 4.96 -26.73 -0.13 -1.81 16 7 C -0.12 -2.12 5.92 -26.73 -0.16 -2.27 16 8 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 9 C -0.12 -1.96 5.92 -26.73 -0.16 -2.11 16 10 C -0.11 -1.68 5.20 -26.73 -0.14 -1.82 16 11 N -0.65 -11.41 5.17 -99.74 -0.52 -11.92 16 12 C 0.10 1.88 2.51 -67.72 -0.17 1.71 16 13 H 0.07 1.34 7.32 -51.93 -0.38 0.96 16 14 C -0.18 -2.87 8.98 37.15 0.33 -2.54 16 15 C -0.01 -0.12 3.72 -27.88 -0.10 -0.23 16 16 C -0.48 -13.18 9.39 -34.44 -0.32 -13.51 16 17 H 0.09 2.45 6.41 -52.49 -0.34 2.11 16 18 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16 19 N -0.91 -27.41 13.96 55.43 0.77 -26.64 16 20 Si 0.87 21.92 27.47 -169.99 -4.67 17.25 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 24 H 0.05 0.64 6.08 -51.93 -0.32 0.32 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 2.41 6.05 -51.93 -0.31 2.09 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.00 6.46 -51.93 -0.34 0.67 16 32 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.33 5.39 7.89 -39.29 -0.31 5.08 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.60 6.22 -51.93 -0.32 0.28 16 43 H 0.05 0.74 8.04 -51.93 -0.42 0.32 16 44 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 45 H 0.01 0.30 7.19 -51.93 -0.37 -0.07 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 340.26 15.07 5.13 5.13 Total: -1.00 -28.17 340.26 -9.40 -37.57 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.86 Total: 5.47 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.25 Total: -26.85 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.26 Total: -38.56 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.17 -9.40 -37.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695859798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.232 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds