Wall clock time and date at job start Mon Mar 30 2020 07:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46685 * 2 1 4 4 C 1.52992 * 109.47124 * 239.99844 * 2 1 3 5 5 C 1.50708 * 109.47159 * 174.99605 * 4 2 1 6 6 H 1.07990 * 119.99566 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99919 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00348 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47103 * 59.99509 * 9 7 5 11 11 H 1.48503 * 109.47129 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46822 * 299.99657 * 9 7 5 13 13 N 1.46898 * 109.47169 * 119.99787 * 2 1 3 14 14 C 1.46897 * 110.99955 * 275.00152 * 13 2 1 15 15 H 1.09001 * 108.87617 * 36.40196 * 14 13 2 16 16 C 1.54236 * 108.89635 * 277.88184 * 14 13 2 17 17 C 1.50479 * 108.52556 * 159.26476 * 16 14 13 18 18 C 1.54068 * 112.49642 * 94.15212 * 17 16 14 19 19 C 1.54068 * 112.81917 * 318.28128 * 18 17 16 20 20 C 1.53000 * 108.88113 * 197.50833 * 19 18 17 21 21 C 1.53007 * 108.87534 * 79.06327 * 19 18 17 22 22 C 1.50466 * 112.49708 * 318.28949 * 19 18 17 23 23 C 1.45549 * 108.89427 * 155.00053 * 14 13 2 24 24 H 1.09002 * 109.46685 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46817 * 299.99895 * 1 2 3 26 26 H 1.08994 * 109.47012 * 60.00158 * 1 2 3 27 27 H 1.09000 * 109.47277 * 294.99885 * 4 2 1 28 28 H 1.09004 * 109.46994 * 55.00198 * 4 2 1 29 29 H 0.96996 * 119.99734 * 179.97438 * 8 7 5 30 30 H 1.00906 * 110.99714 * 38.95881 * 13 2 1 31 31 H 1.09001 * 109.63154 * 278.97388 * 16 14 13 32 32 H 1.08993 * 109.63059 * 39.55461 * 16 14 13 33 33 H 1.08995 * 108.87529 * 333.37956 * 17 16 14 34 34 H 1.08995 * 108.79674 * 214.87234 * 17 16 14 35 35 H 1.09003 * 108.81593 * 197.42450 * 18 17 16 36 36 H 1.09003 * 108.72706 * 79.08756 * 18 17 16 37 37 H 1.08997 * 109.47067 * 182.98014 * 20 19 18 38 38 H 1.09002 * 109.47084 * 302.97729 * 20 19 18 39 39 H 1.08998 * 109.46776 * 62.97630 * 20 19 18 40 40 H 1.08996 * 109.47137 * 284.67744 * 21 19 18 41 41 H 1.09002 * 109.46604 * 44.67237 * 21 19 18 42 42 H 1.08991 * 109.46906 * 164.67034 * 21 19 18 43 43 H 1.08999 * 109.63126 * 334.44141 * 22 19 18 44 44 H 1.09000 * 109.79116 * 213.95749 * 22 19 18 45 45 H 1.09005 * 108.89464 * 303.44002 * 23 14 13 46 46 H 1.08995 * 108.89608 * 61.93543 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2304 -1.1925 -2.3583 8 7 3.5764 -1.8369 -3.3000 9 14 6.0922 -1.0612 -2.4366 10 1 6.6839 -1.6881 -1.2275 11 1 6.5871 -1.7601 -3.6499 12 1 6.4854 0.3695 -2.4953 13 7 2.0197 -0.6924 1.1994 14 6 2.0825 0.2227 2.3468 15 1 1.2399 0.9122 2.2945 16 6 3.3932 1.0318 2.2693 17 6 3.2361 2.2772 3.0992 18 6 3.7660 2.0997 4.5349 19 6 3.3885 0.7372 5.1469 20 6 3.5569 0.8129 6.6658 21 6 4.3367 -0.3314 4.5991 22 6 1.9720 0.3379 4.8335 23 6 1.9812 -0.5529 3.5743 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2617 -2.1369 29 1 4.0608 -2.2430 -4.0357 30 1 1.4496 -1.4979 1.4100 31 1 4.2166 0.4335 2.6593 32 1 3.5941 1.3051 1.2335 33 1 2.1793 2.5405 3.1434 34 1 3.7819 3.0899 2.6198 35 1 3.3563 2.8920 5.1614 36 1 4.8522 2.1899 4.5207 37 1 3.3431 -0.1619 7.1041 38 1 4.5807 1.1017 6.9038 39 1 2.8670 1.5529 7.0713 40 1 4.0603 -0.5704 3.5722 41 1 5.3596 0.0445 4.6220 42 1 4.2657 -1.2292 5.2129 43 1 1.3730 1.2292 4.6470 44 1 1.5510 -0.2173 5.6717 45 1 1.0610 -1.1366 3.5482 46 1 2.8287 -1.2358 3.6313 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697633531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:02 Heat of formation + Delta-G solvation = -22.406403 kcal Electronic energy + Delta-G solvation = -20407.268594 eV Core-core repulsion = 17716.797108 eV Total energy + Delta-G solvation = -2690.471486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33676 -38.10178 -35.21420 -33.97442 -33.34654 -30.27267 -29.11152 -28.66834 -27.46749 -25.48150 -24.70598 -23.20357 -21.19593 -20.83094 -18.93009 -18.35001 -17.05366 -16.89528 -16.49013 -15.76760 -15.38639 -15.12303 -14.69946 -14.39438 -14.20429 -13.90851 -13.68965 -13.50833 -13.39461 -13.21186 -13.09633 -12.91082 -12.79472 -12.55816 -12.46033 -12.39892 -11.93015 -11.89875 -11.65188 -11.39881 -11.20756 -11.15717 -11.08818 -11.00186 -10.84695 -10.46167 -10.43598 -8.91117 -8.06880 -6.10866 1.41308 1.44238 1.51499 2.48789 3.24253 3.38921 3.81553 3.88730 4.00071 4.15261 4.18647 4.31403 4.40424 4.43806 4.51029 4.51652 4.54830 4.70265 4.77921 4.86984 4.87866 4.91757 4.99440 5.00597 5.07313 5.15263 5.18376 5.21987 5.25886 5.29162 5.32347 5.37484 5.43419 5.46654 5.52416 5.58561 5.60297 5.70167 5.73536 5.81195 5.93688 6.40290 6.58792 6.84247 7.03174 7.54249 9.05349 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.006069 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.894688 B = 4612.282283 C = 5315.966435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.492 4.492 6 H 0.058 0.942 7 C -0.007 4.007 8 N -0.943 5.943 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.680 5.680 14 C 0.103 3.897 15 H 0.028 0.972 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.101 4.101 19 C -0.059 4.059 20 C -0.138 4.138 21 C -0.176 4.176 22 C -0.094 4.094 23 C -0.138 4.138 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.053 0.947 27 H -0.011 1.011 28 H -0.013 1.013 29 H 0.257 0.743 30 H 0.333 0.667 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.057 0.943 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 6.395 19.902 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.531 4.531 6 H 0.076 0.924 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.311 5.311 14 C -0.006 4.006 15 H 0.045 0.955 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.059 4.059 20 C -0.195 4.195 21 C -0.232 4.232 22 C -0.132 4.132 23 C -0.175 4.175 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.066 0.934 30 H 0.152 0.848 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.011 6.389 19.591 20.704 hybrid contribution -0.039 -0.096 -0.679 0.687 sum -2.050 6.293 18.912 20.036 Atomic orbital electron populations 1.22408 0.97175 1.01609 1.01597 1.21412 0.91637 0.96745 0.91018 0.92745 1.18988 0.95233 0.94051 0.91633 1.21459 0.93276 1.31998 1.06350 0.92370 1.25851 1.02724 0.95843 0.95872 1.70095 1.37047 1.38271 1.13097 0.85673 0.80869 0.78282 0.77206 1.19673 1.21330 1.19633 1.60509 1.58037 1.09336 1.03222 1.20334 0.96233 0.93837 0.90233 0.95450 1.21722 0.98715 0.96945 0.98859 1.21259 1.01137 0.97013 0.95593 1.21988 1.00478 0.96601 0.94748 1.20206 0.95248 0.94714 0.95744 1.21960 1.01728 1.01978 0.93842 1.22821 0.98750 0.98746 1.02849 1.21279 0.96161 0.99257 0.96527 1.20940 1.02999 0.99553 0.94018 0.92879 0.91978 0.92808 0.99252 0.99437 0.93398 0.84811 0.89754 0.94559 0.92335 0.92790 0.91256 0.92500 0.92326 0.92792 0.92096 0.89731 0.93490 0.92589 0.91854 0.90607 0.92453 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 9.15 71.98 0.66 -5.04 16 2 C 0.10 4.19 2.22 44.92 0.10 4.29 16 3 H 0.05 2.34 6.98 -2.39 -0.02 2.32 16 4 C 0.04 2.05 4.65 29.85 0.14 2.19 16 5 C -0.49 -28.48 8.84 25.60 0.23 -28.25 16 6 H 0.06 3.31 7.38 -2.92 -0.02 3.29 16 7 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 8 N -0.94 -59.12 13.29 21.45 0.28 -58.83 16 9 Si 0.95 46.35 29.54 68.60 2.03 48.37 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.68 -25.11 5.73 -479.09 -2.75 -27.86 16 14 C 0.10 3.04 1.80 43.06 0.08 3.12 16 15 H 0.03 0.81 6.38 -2.39 -0.02 0.80 16 16 C -0.12 -3.86 5.03 30.20 0.15 -3.70 16 17 C -0.11 -2.74 5.31 30.14 0.16 -2.58 16 18 C -0.10 -2.01 4.83 31.32 0.15 -1.86 16 19 C -0.06 -1.12 0.72 -52.64 -0.04 -1.16 16 20 C -0.14 -2.12 7.98 71.98 0.57 -1.54 16 21 C -0.18 -3.88 6.33 71.98 0.46 -3.42 16 22 C -0.09 -1.82 5.01 30.20 0.15 -1.66 16 23 C -0.14 -3.32 4.38 28.74 0.13 -3.19 16 24 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 25 H 0.06 1.78 7.39 -2.39 -0.02 1.76 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.33 11.56 7.91 -89.69 -0.71 10.85 16 31 H 0.08 2.63 4.26 -2.39 -0.01 2.62 16 32 H 0.04 1.38 6.78 -2.39 -0.02 1.36 16 33 H 0.06 1.38 6.63 -2.39 -0.02 1.36 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.19 7.98 -2.39 -0.02 1.17 16 36 H 0.06 1.15 7.72 -2.39 -0.02 1.13 16 37 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 2.26 2.68 -2.39 -0.01 2.25 16 41 H 0.05 1.03 7.76 -2.39 -0.02 1.01 16 42 H 0.06 1.13 8.03 -2.39 -0.02 1.11 16 43 H 0.06 1.22 6.98 -2.39 -0.02 1.20 16 44 H 0.08 1.26 7.68 -2.39 -0.02 1.24 16 45 H 0.06 1.31 7.93 -2.38 -0.02 1.29 16 46 H 0.09 2.22 4.83 -2.39 -0.01 2.21 16 Total: -1.00 -64.00 330.24 3.19 -60.82 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.23 Total: 20.30 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.40 Total: -42.80 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -2.46 Total: -86.69 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -64.00 3.19 -60.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697633531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.410 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds