Wall clock time and date at job start Mon Mar 30 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47691 * 2 1 4 4 C 1.53009 * 109.46899 * 119.99837 * 2 1 3 5 5 C 1.50695 * 109.47184 * 184.99688 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00087 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00014 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00397 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46773 * 90.00200 * 9 7 5 11 11 H 1.48490 * 109.47417 * 210.00609 * 9 7 5 12 12 H 1.48505 * 109.46906 * 330.01043 * 9 7 5 13 13 N 1.46904 * 109.47524 * 239.99223 * 2 1 3 14 14 C 1.46902 * 110.99525 * 84.60488 * 13 2 1 15 15 H 1.08996 * 109.63079 * 326.85815 * 14 13 2 16 16 C 1.54233 * 109.62910 * 206.46756 * 14 13 2 17 17 C 1.45539 * 112.40997 * 160.30454 * 16 14 13 18 18 C 1.54242 * 112.40407 * 61.93388 * 17 16 14 19 19 C 1.50474 * 108.52561 * 280.01681 * 18 17 16 20 20 C 1.53004 * 108.87859 * 214.92616 * 19 18 17 21 21 C 1.53001 * 108.87586 * 333.37304 * 19 18 17 22 22 C 1.54069 * 112.49813 * 94.14956 * 19 18 17 23 23 C 1.50472 * 109.62815 * 87.44071 * 14 13 2 24 24 H 1.09003 * 109.46760 * 55.18718 * 1 2 3 25 25 H 1.09002 * 109.47469 * 175.18576 * 1 2 3 26 26 H 1.09001 * 109.47479 * 295.19025 * 1 2 3 27 27 H 1.08998 * 109.46616 * 305.00051 * 4 2 1 28 28 H 1.08998 * 109.47009 * 64.99716 * 4 2 1 29 29 H 0.96991 * 120.00081 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99931 * 320.66035 * 13 2 1 31 31 H 1.09001 * 108.89492 * 281.05770 * 16 14 13 32 32 H 1.08999 * 108.89509 * 39.64401 * 16 14 13 33 33 H 1.08997 * 108.90009 * 182.68682 * 17 16 14 34 34 H 1.08998 * 108.89621 * 301.27947 * 17 16 14 35 35 H 1.08997 * 109.62661 * 39.73032 * 18 17 16 36 36 H 1.09004 * 109.62865 * 160.11192 * 18 17 16 37 37 H 1.09006 * 109.46771 * 60.00183 * 20 19 18 38 38 H 1.08999 * 109.46813 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47194 * 300.00222 * 20 19 18 40 40 H 1.08999 * 109.47109 * 47.73259 * 21 19 18 41 41 H 1.09002 * 109.46869 * 167.73279 * 21 19 18 42 42 H 1.09002 * 109.46776 * 287.73005 * 21 19 18 43 43 H 1.09001 * 108.81320 * 79.14353 * 22 19 18 44 44 H 1.08999 * 108.81580 * 197.53294 * 22 19 18 45 45 H 1.09006 * 108.87495 * 334.63517 * 23 14 13 46 46 H 1.09002 * 108.87838 * 93.07931 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0857 0.5398 7 6 4.2302 -1.1927 2.3585 8 7 3.5761 -1.8370 3.3003 9 14 6.0919 -1.0617 2.4369 10 1 6.4707 0.1611 3.1895 11 1 6.6437 -2.2568 3.1241 12 1 6.6411 -0.9850 1.0593 13 7 2.0197 -0.6927 -1.1993 14 6 2.0736 0.2201 -2.3491 15 1 1.2654 0.9478 -2.2772 16 6 1.9310 -0.5851 -3.6569 17 6 1.5205 0.2466 -4.7785 18 6 2.5508 1.3480 -5.1018 19 6 2.3599 2.4812 -4.1304 20 6 2.6428 3.8021 -4.8488 21 6 0.9069 2.4828 -3.6510 22 6 3.2885 2.3709 -2.9060 23 6 3.3994 0.9315 -2.3681 24 1 -0.3633 0.5867 -0.8438 25 1 -0.3634 -1.0240 -0.0862 26 1 -0.3634 0.4374 0.9299 27 1 1.6052 -0.2617 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 4.0604 -2.2437 4.0357 30 1 1.4534 -1.5017 -1.4062 31 1 2.8893 -1.0478 -3.8928 32 1 1.1878 -1.3687 -3.5097 33 1 1.3913 -0.3848 -5.6575 34 1 0.5668 0.7167 -4.5389 35 1 3.5592 0.9465 -5.0024 36 1 2.3976 1.7052 -6.1202 37 1 1.9545 3.9147 -5.6865 38 1 2.5068 4.6303 -4.1534 39 1 3.6682 3.8023 -5.2185 40 1 0.6192 1.4726 -3.3601 41 1 0.8076 3.1498 -2.7946 42 1 0.2589 2.8273 -4.4570 43 1 4.2827 2.7190 -3.1863 44 1 2.9028 3.0120 -2.1133 45 1 3.7967 0.9639 -1.3535 46 1 4.0910 0.3719 -2.9979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697633538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:10 Heat of formation + Delta-G solvation = -7.175673 kcal Electronic energy + Delta-G solvation = -20487.905638 eV Core-core repulsion = 17798.094605 eV Total energy + Delta-G solvation = -2689.811032 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29057 -36.54610 -33.81164 -32.53472 -31.74163 -29.06672 -27.68186 -27.18204 -26.56500 -24.07449 -22.96864 -22.20884 -19.72697 -19.39609 -17.99323 -16.34711 -15.94682 -15.53260 -14.55972 -14.51968 -14.17697 -13.72210 -13.58016 -13.04507 -12.88095 -12.74415 -12.46959 -12.38885 -12.00247 -11.83105 -11.74209 -11.58476 -11.47769 -11.19528 -10.98923 -10.72882 -10.57848 -10.48193 -10.28553 -10.22790 -10.04555 -9.96053 -9.76148 -9.63152 -9.10781 -8.89454 -8.19373 -7.36715 -5.81889 -3.78732 3.42380 3.48499 3.53567 4.61669 4.65087 4.69751 4.78337 4.97241 5.12596 5.21335 5.39609 5.43837 5.51932 5.54954 5.58741 5.67394 5.70315 5.76681 5.81609 5.85497 5.94588 5.96043 6.00337 6.05850 6.08373 6.15986 6.16351 6.28685 6.33368 6.40558 6.42533 6.52471 6.54972 6.63915 6.68668 6.76305 6.91450 7.14366 7.68079 7.81166 8.14998 8.16030 8.31223 8.68258 9.26827 9.82087 11.30411 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.005870 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.353041 B = 4769.093189 C = 5245.792055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.663 5.663 14 C 0.074 3.926 15 H 0.062 0.938 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.105 4.105 19 C -0.061 4.061 20 C -0.141 4.141 21 C -0.172 4.172 22 C -0.106 4.106 23 C -0.110 4.110 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.256 0.744 30 H 0.329 0.671 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 7.651 -16.640 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.081 0.919 4 C -0.005 4.005 5 C -0.522 4.522 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.293 5.293 14 C -0.035 4.035 15 H 0.079 0.921 16 C -0.157 4.157 17 C -0.170 4.170 18 C -0.142 4.142 19 C -0.061 4.061 20 C -0.199 4.199 21 C -0.228 4.228 22 C -0.144 4.144 23 C -0.148 4.148 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.521 7.636 -16.320 18.577 hybrid contribution 0.168 0.083 -0.055 0.195 sum -4.353 7.719 -16.375 18.619 Atomic orbital electron populations 1.22571 0.99845 1.00789 1.00658 1.21786 0.89570 0.98150 0.92396 0.91867 1.19107 0.96202 0.95352 0.89791 1.21163 0.91930 1.32520 1.06572 0.92300 1.25004 0.97829 0.96052 0.96145 1.69967 1.35081 1.37211 1.12417 0.86670 0.86690 0.77140 0.77927 1.21121 1.21607 1.19958 1.60607 1.57977 1.08236 1.02488 1.21673 0.97679 0.94564 0.89603 0.92111 1.20665 1.01964 0.98199 0.94901 1.20766 1.00483 0.97634 0.98145 1.21380 0.99770 0.95264 0.97832 1.20234 0.95718 0.94900 0.95296 1.21999 1.01078 0.97035 0.99757 1.22814 0.95849 1.03560 1.00539 1.22034 0.98530 0.97776 0.96027 1.21389 0.97401 0.93611 1.02424 0.94553 0.93219 0.92590 0.96697 0.96625 0.93446 0.85327 0.91811 0.92691 0.92887 0.90408 0.91637 0.92397 0.93059 0.92969 0.92933 0.88926 0.93143 0.93399 0.92614 0.92488 0.90184 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.16 37.15 0.34 -2.70 16 2 C 0.09 1.83 2.22 -67.71 -0.15 1.68 16 3 H 0.06 1.32 7.57 -51.93 -0.39 0.93 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.48 -13.70 8.84 -34.44 -0.30 -14.01 16 6 H 0.06 1.66 6.92 -52.49 -0.36 1.29 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.80 13.29 55.43 0.74 -27.06 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.39 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -12.28 5.67 -100.38 -0.57 -12.85 16 14 C 0.07 1.12 1.91 -68.33 -0.13 0.99 16 15 H 0.06 0.89 3.27 -51.93 -0.17 0.72 16 16 C -0.12 -1.54 4.75 -29.60 -0.14 -1.68 16 17 C -0.13 -1.44 5.15 -29.60 -0.15 -1.59 16 18 C -0.11 -1.12 5.01 -27.34 -0.14 -1.26 16 19 C -0.06 -0.68 0.72 -155.21 -0.11 -0.79 16 20 C -0.14 -1.38 7.98 37.16 0.30 -1.08 16 21 C -0.17 -1.89 6.33 37.16 0.24 -1.66 16 22 C -0.11 -1.39 4.83 -25.62 -0.12 -1.51 16 23 C -0.11 -1.74 4.89 -27.44 -0.13 -1.87 16 24 H 0.04 0.54 7.49 -51.93 -0.39 0.15 16 25 H 0.05 0.82 8.05 -51.93 -0.42 0.40 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.33 5.77 7.73 -39.29 -0.30 5.47 16 31 H 0.06 0.87 7.47 -51.93 -0.39 0.49 16 32 H 0.05 0.69 7.63 -51.93 -0.40 0.29 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.82 4.83 -51.93 -0.25 0.57 16 35 H 0.06 0.75 6.98 -51.93 -0.36 0.39 16 36 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 37 H 0.05 0.45 8.06 -51.93 -0.42 0.04 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.08 2.68 -51.93 -0.14 0.94 16 41 H 0.05 0.58 7.76 -51.93 -0.40 0.18 16 42 H 0.05 0.47 8.03 -51.93 -0.42 0.05 16 43 H 0.06 0.70 7.98 -51.93 -0.41 0.29 16 44 H 0.06 0.78 7.73 -51.93 -0.40 0.38 16 45 H 0.08 1.54 6.79 -51.93 -0.35 1.19 16 46 H 0.05 0.86 6.63 -51.93 -0.34 0.52 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -29.68 330.15 -9.01 -38.69 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -8.39 Total: 2.31 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.74 Total: -23.45 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.17 Total: -39.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -9.01 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697633538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.517 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds