Wall clock time and date at job start Mon Mar 30 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47691 * 2 1 4 4 C 1.53009 * 109.46899 * 119.99837 * 2 1 3 5 5 C 1.50695 * 109.47184 * 184.99688 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00087 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00014 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00397 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46773 * 90.00200 * 9 7 5 11 11 H 1.48490 * 109.47417 * 210.00609 * 9 7 5 12 12 H 1.48505 * 109.46906 * 330.01043 * 9 7 5 13 13 N 1.46904 * 109.47524 * 239.99223 * 2 1 3 14 14 C 1.46902 * 110.99525 * 84.60488 * 13 2 1 15 15 H 1.08996 * 109.63079 * 326.85815 * 14 13 2 16 16 C 1.54233 * 109.62910 * 206.46756 * 14 13 2 17 17 C 1.45539 * 112.40997 * 160.30454 * 16 14 13 18 18 C 1.54242 * 112.40407 * 61.93388 * 17 16 14 19 19 C 1.50474 * 108.52561 * 280.01681 * 18 17 16 20 20 C 1.53004 * 108.87859 * 214.92616 * 19 18 17 21 21 C 1.53001 * 108.87586 * 333.37304 * 19 18 17 22 22 C 1.54069 * 112.49813 * 94.14956 * 19 18 17 23 23 C 1.50472 * 109.62815 * 87.44071 * 14 13 2 24 24 H 1.09003 * 109.46760 * 55.18718 * 1 2 3 25 25 H 1.09002 * 109.47469 * 175.18576 * 1 2 3 26 26 H 1.09001 * 109.47479 * 295.19025 * 1 2 3 27 27 H 1.08998 * 109.46616 * 305.00051 * 4 2 1 28 28 H 1.08998 * 109.47009 * 64.99716 * 4 2 1 29 29 H 0.96991 * 120.00081 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99931 * 320.66035 * 13 2 1 31 31 H 1.09001 * 108.89492 * 281.05770 * 16 14 13 32 32 H 1.08999 * 108.89509 * 39.64401 * 16 14 13 33 33 H 1.08997 * 108.90009 * 182.68682 * 17 16 14 34 34 H 1.08998 * 108.89621 * 301.27947 * 17 16 14 35 35 H 1.08997 * 109.62661 * 39.73032 * 18 17 16 36 36 H 1.09004 * 109.62865 * 160.11192 * 18 17 16 37 37 H 1.09006 * 109.46771 * 60.00183 * 20 19 18 38 38 H 1.08999 * 109.46813 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47194 * 300.00222 * 20 19 18 40 40 H 1.08999 * 109.47109 * 47.73259 * 21 19 18 41 41 H 1.09002 * 109.46869 * 167.73279 * 21 19 18 42 42 H 1.09002 * 109.46776 * 287.73005 * 21 19 18 43 43 H 1.09001 * 108.81320 * 79.14353 * 22 19 18 44 44 H 1.08999 * 108.81580 * 197.53294 * 22 19 18 45 45 H 1.09006 * 108.87495 * 334.63517 * 23 14 13 46 46 H 1.09002 * 108.87838 * 93.07931 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 3.5418 -0.6150 1.3128 6 1 4.0789 -0.0857 0.5398 7 6 4.2302 -1.1927 2.3585 8 7 3.5761 -1.8370 3.3003 9 14 6.0919 -1.0617 2.4369 10 1 6.4707 0.1611 3.1895 11 1 6.6437 -2.2568 3.1241 12 1 6.6411 -0.9850 1.0593 13 7 2.0197 -0.6927 -1.1993 14 6 2.0736 0.2201 -2.3491 15 1 1.2654 0.9478 -2.2772 16 6 1.9310 -0.5851 -3.6569 17 6 1.5205 0.2466 -4.7785 18 6 2.5508 1.3480 -5.1018 19 6 2.3599 2.4812 -4.1304 20 6 2.6428 3.8021 -4.8488 21 6 0.9069 2.4828 -3.6510 22 6 3.2885 2.3709 -2.9060 23 6 3.3994 0.9315 -2.3681 24 1 -0.3633 0.5867 -0.8438 25 1 -0.3634 -1.0240 -0.0862 26 1 -0.3634 0.4374 0.9299 27 1 1.6052 -0.2617 2.1370 28 1 1.7515 -1.7715 1.2057 29 1 4.0604 -2.2437 4.0357 30 1 1.4534 -1.5017 -1.4062 31 1 2.8893 -1.0478 -3.8928 32 1 1.1878 -1.3687 -3.5097 33 1 1.3913 -0.3848 -5.6575 34 1 0.5668 0.7167 -4.5389 35 1 3.5592 0.9465 -5.0024 36 1 2.3976 1.7052 -6.1202 37 1 1.9545 3.9147 -5.6865 38 1 2.5068 4.6303 -4.1534 39 1 3.6682 3.8023 -5.2185 40 1 0.6192 1.4726 -3.3601 41 1 0.8076 3.1498 -2.7946 42 1 0.2589 2.8273 -4.4570 43 1 4.2827 2.7190 -3.1863 44 1 2.9028 3.0120 -2.1133 45 1 3.7967 0.9639 -1.3535 46 1 4.0910 0.3719 -2.9979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697633538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:10 Heat of formation + Delta-G solvation = -23.868694 kcal Electronic energy + Delta-G solvation = -20488.629501 eV Core-core repulsion = 17798.094605 eV Total energy + Delta-G solvation = -2690.534896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32457 -37.99510 -35.24431 -34.22672 -33.11344 -30.51909 -29.04160 -28.54813 -27.53881 -25.33898 -24.82924 -23.31283 -21.18074 -20.77777 -18.90847 -18.39320 -17.26716 -16.57510 -16.52547 -15.73774 -15.50002 -14.89427 -14.82843 -14.41591 -14.21324 -13.86187 -13.77752 -13.54817 -13.44389 -13.21736 -13.03987 -12.91676 -12.84671 -12.57410 -12.49464 -12.39410 -11.94962 -11.89459 -11.59983 -11.56078 -11.23203 -11.16618 -11.03577 -10.93740 -10.89434 -10.52244 -10.46937 -8.82015 -8.08372 -6.12266 1.39617 1.40883 1.52230 2.47452 3.23588 3.44167 3.75368 3.82625 3.99745 4.09225 4.23302 4.28966 4.39645 4.46758 4.50267 4.52727 4.54394 4.63727 4.75369 4.83642 4.87361 4.93686 4.95574 5.03956 5.12314 5.16451 5.18131 5.24095 5.25844 5.28451 5.31261 5.34846 5.42546 5.44010 5.52191 5.57131 5.60058 5.68466 5.72456 5.77537 5.93039 6.40255 6.62414 6.87500 7.02177 7.52846 9.03917 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.005870 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.353041 B = 4769.093189 C = 5245.792055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 H 0.053 0.947 4 C 0.038 3.962 5 C -0.493 4.493 6 H 0.056 0.944 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.682 5.682 14 C 0.076 3.924 15 H 0.073 0.927 16 C -0.111 4.111 17 C -0.131 4.131 18 C -0.104 4.104 19 C -0.059 4.059 20 C -0.139 4.139 21 C -0.171 4.171 22 C -0.102 4.102 23 C -0.105 4.105 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.052 0.948 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.258 0.742 30 H 0.334 0.666 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 8.582 -19.023 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 H 0.071 0.929 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.314 5.314 14 C -0.032 4.032 15 H 0.090 0.910 16 C -0.149 4.149 17 C -0.169 4.169 18 C -0.141 4.141 19 C -0.059 4.059 20 C -0.196 4.196 21 C -0.227 4.227 22 C -0.140 4.140 23 C -0.144 4.144 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.007 0.993 28 H 0.008 0.992 29 H 0.066 0.934 30 H 0.152 0.848 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.864 8.578 -18.719 21.157 hybrid contribution 0.288 -0.213 0.696 0.783 sum -4.576 8.364 -18.023 20.389 Atomic orbital electron populations 1.22425 0.96932 1.01696 1.01778 1.21395 0.91791 0.96569 0.90878 0.92900 1.18998 0.95102 0.94127 0.91761 1.21493 0.93421 1.31929 1.06283 0.92609 1.25849 1.02718 0.95848 0.95895 1.70096 1.36960 1.38260 1.13105 0.85616 0.80907 0.77404 0.78106 1.20158 1.21144 1.19408 1.60438 1.58455 1.09232 1.03231 1.21740 0.97546 0.94439 0.89483 0.90976 1.20598 1.01670 0.98353 0.94267 1.20749 1.00785 0.97651 0.97673 1.21383 0.99148 0.94933 0.98668 1.20207 0.95159 0.96106 0.94390 1.21972 1.01703 0.95920 1.00023 1.22784 0.95952 1.02988 1.00948 1.21998 0.99520 0.95502 0.96956 1.21338 0.97602 0.95595 0.99839 0.91664 0.92729 0.92880 0.99317 0.99230 0.93366 0.84750 0.92957 0.92078 0.91300 0.89443 0.92717 0.90488 0.91531 0.93153 0.92668 0.89548 0.93916 0.91545 0.92315 0.93359 0.94459 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.58 9.16 71.98 0.66 -4.92 16 2 C 0.10 4.24 2.22 44.92 0.10 4.34 16 3 H 0.05 2.26 7.57 -2.39 -0.02 2.24 16 4 C 0.04 2.01 4.65 29.85 0.14 2.15 16 5 C -0.49 -28.77 8.84 25.60 0.23 -28.54 16 6 H 0.06 3.23 6.92 -2.91 -0.02 3.21 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 8 N -0.94 -59.23 13.29 21.45 0.28 -58.94 16 9 Si 0.95 46.76 29.54 68.60 2.03 48.79 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.68 -25.40 5.67 -471.51 -2.67 -28.07 16 14 C 0.08 2.25 1.91 44.52 0.09 2.33 16 15 H 0.07 2.00 3.27 -2.39 -0.01 1.99 16 16 C -0.11 -2.66 4.75 28.73 0.14 -2.52 16 17 C -0.13 -2.44 5.15 28.74 0.15 -2.29 16 18 C -0.10 -1.92 5.01 30.20 0.15 -1.77 16 19 C -0.06 -1.16 0.72 -52.64 -0.04 -1.19 16 20 C -0.14 -2.31 7.98 71.98 0.57 -1.74 16 21 C -0.17 -3.28 6.33 71.98 0.46 -2.82 16 22 C -0.10 -2.60 4.83 31.32 0.15 -2.45 16 23 C -0.11 -3.35 4.89 30.14 0.15 -3.20 16 24 H 0.06 1.78 7.49 -2.39 -0.02 1.76 16 25 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 29 H 0.26 15.35 8.31 -92.72 -0.77 14.58 16 30 H 0.33 11.62 7.73 -89.69 -0.69 10.93 16 31 H 0.05 1.37 7.47 -2.39 -0.02 1.35 16 32 H 0.06 1.40 7.63 -2.39 -0.02 1.38 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.51 4.83 -2.39 -0.01 1.50 16 35 H 0.05 1.14 6.98 -2.39 -0.02 1.13 16 36 H 0.08 1.17 7.68 -2.38 -0.02 1.15 16 37 H 0.07 0.92 8.06 -2.38 -0.02 0.90 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 1.76 2.68 -2.39 -0.01 1.76 16 41 H 0.04 0.89 7.76 -2.39 -0.02 0.87 16 42 H 0.07 1.05 8.03 -2.39 -0.02 1.03 16 43 H 0.06 1.44 7.98 -2.39 -0.02 1.42 16 44 H 0.05 1.30 7.73 -2.39 -0.02 1.29 16 45 H 0.04 1.49 6.79 -2.38 -0.02 1.47 16 46 H 0.05 1.61 6.63 -2.39 -0.02 1.59 16 Total: -1.00 -65.18 330.15 3.28 -61.90 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.24 Total: 18.94 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 3.40 Total: -42.61 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.39 Total: -87.02 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -65.18 3.28 -61.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697633538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.029 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds