Wall clock time and date at job start Mon Mar 30 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46733 * 2 1 4 4 C 1.53000 * 109.47233 * 240.00658 * 2 1 3 5 5 C 1.52997 * 109.47060 * 299.99657 * 4 2 1 6 6 N 1.46894 * 109.47515 * 180.02562 * 5 4 2 7 7 C 1.46901 * 111.00066 * 303.95596 * 6 5 4 8 8 C 1.46900 * 111.00559 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47289 * 190.00377 * 8 6 5 10 10 C 1.53003 * 109.47116 * 180.02562 * 9 8 6 11 11 C 1.50694 * 109.47189 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99774 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99987 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47062 * 89.99885 * 15 13 11 17 17 H 1.48497 * 109.47025 * 210.00075 * 15 13 11 18 18 H 1.48497 * 109.46784 * 330.00245 * 15 13 11 19 19 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 5 4 21 21 H 1.09001 * 109.47375 * 59.99966 * 20 19 5 22 22 C 1.52996 * 109.46975 * 180.02562 * 20 19 5 23 23 C 1.52996 * 109.47346 * 120.00200 * 2 1 3 24 24 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47662 * 299.99768 * 1 2 3 26 26 H 1.09002 * 109.47075 * 60.00274 * 1 2 3 27 27 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 28 28 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 30 30 H 1.09000 * 109.47027 * 59.99953 * 7 6 5 31 31 H 1.08995 * 109.47279 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.47006 * 299.99624 * 7 6 5 33 33 H 1.09000 * 109.46880 * 310.00411 * 8 6 5 34 34 H 1.09001 * 109.47205 * 69.99888 * 8 6 5 35 35 H 1.08999 * 109.46892 * 299.99394 * 9 8 6 36 36 H 1.08993 * 109.47233 * 59.99837 * 9 8 6 37 37 H 1.09000 * 109.46856 * 299.99914 * 10 9 8 38 38 H 1.09001 * 109.47402 * 59.99496 * 10 9 8 39 39 H 0.97006 * 119.99655 * 179.97438 * 14 13 11 40 40 H 1.09001 * 109.47002 * 299.99574 * 19 5 4 41 41 H 1.09000 * 109.47050 * 179.97438 * 19 5 4 42 42 H 1.08996 * 109.47261 * 180.02562 * 22 20 19 43 43 H 1.09004 * 109.47368 * 299.99783 * 22 20 19 44 44 H 1.09001 * 109.47372 * 59.99628 * 22 20 19 45 45 H 1.08992 * 109.47554 * 180.02562 * 23 2 1 46 46 H 1.09004 * 109.47108 * 300.00289 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.5301 -2.1636 -1.2494 6 7 2.0203 -2.8562 -2.4485 7 6 1.6285 -2.1378 -3.6686 8 6 1.5489 -4.2471 -2.4829 9 6 2.2724 -5.0034 -3.5988 10 6 1.7809 -6.4519 -3.6350 11 6 2.4931 -7.1967 -4.7345 12 1 3.2236 -6.6880 -5.3461 13 6 2.2130 -8.5280 -4.9591 14 7 1.3246 -9.1478 -4.2134 15 14 3.0963 -9.4514 -6.3216 16 1 4.3388 -10.0602 -5.7821 17 1 2.2107 -10.5197 -6.8504 18 1 3.4418 -8.5083 -7.4154 19 6 2.0401 -2.8849 -0.0002 20 6 1.5301 -2.1638 1.2491 21 1 0.4400 -2.1638 1.2491 22 6 2.0406 -2.8847 2.4982 23 6 2.0401 -0.7213 1.2492 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6767 -0.2072 -2.1393 28 1 3.1301 -0.7215 -1.2491 29 1 0.4402 -2.1637 -1.2494 30 1 2.0492 -1.1324 -3.6491 31 1 2.0045 -2.6718 -4.5412 32 1 0.5415 -2.0759 -3.7205 33 1 1.7572 -4.7251 -1.5257 34 1 0.4752 -4.2623 -2.6705 35 1 2.0640 -4.5255 -4.5560 36 1 3.3460 -4.9882 -3.4112 37 1 1.9889 -6.9301 -2.6779 38 1 0.7073 -6.4668 -3.8229 39 1 1.1272 -10.0843 -4.3717 40 1 3.1301 -2.8849 -0.0001 41 1 1.6765 -3.9125 0.0000 42 1 1.6768 -2.3713 3.3882 43 1 1.6776 -3.9126 2.4984 44 1 3.1306 -2.8844 2.4981 45 1 3.1300 -0.7209 1.2494 46 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697681625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:42 Heat of formation + Delta-G solvation = -36.693345 kcal Electronic energy + Delta-G solvation = -19596.537663 eV Core-core repulsion = 16905.446648 eV Total energy + Delta-G solvation = -2691.091014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86940 -36.71727 -33.69239 -33.21558 -31.51546 -29.69500 -27.62627 -26.84092 -26.00811 -24.85264 -22.72908 -21.29650 -20.26689 -19.77100 -18.71339 -16.27930 -16.04856 -15.26163 -14.77146 -14.56385 -14.35484 -14.26881 -13.93719 -13.58121 -13.19999 -12.90630 -12.67869 -12.35505 -12.23981 -11.97669 -11.83697 -11.59830 -11.29652 -11.15908 -11.13203 -11.06189 -10.90616 -10.71953 -10.53879 -10.42571 -10.35039 -10.10111 -9.83748 -9.49315 -9.25205 -8.99977 -8.30085 -7.93844 -5.95615 -3.97333 3.34965 3.40803 3.44629 4.12959 4.50358 4.57740 4.61322 4.85379 5.00444 5.11832 5.20294 5.30777 5.34826 5.40177 5.46352 5.50979 5.61435 5.62657 5.63349 5.70960 5.75208 5.79985 5.87636 5.90914 5.95333 6.04028 6.05810 6.13128 6.15860 6.18977 6.25349 6.30121 6.33190 6.45969 6.54302 6.78039 6.88109 7.19709 7.48431 7.51522 7.73804 7.89483 8.05431 8.49236 9.09980 9.66381 11.15895 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.033613 B = 0.003933 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.814298 B = 7118.175975 C = 7605.476859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.067 0.933 4 C -0.108 4.108 5 C 0.085 3.915 6 N -0.539 5.539 7 C 0.021 3.979 8 C 0.052 3.948 9 C -0.104 4.104 10 C 0.022 3.978 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.109 4.109 20 C -0.092 4.092 21 H 0.069 0.931 22 C -0.147 4.147 23 C -0.108 4.108 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 18.513 10.851 21.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.024 4.024 6 N -0.263 5.263 7 C -0.127 4.127 8 C -0.075 4.075 9 C -0.142 4.142 10 C -0.016 4.016 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.147 4.147 20 C -0.111 4.111 21 H 0.088 0.912 22 C -0.204 4.204 23 C -0.145 4.145 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.326 18.331 10.887 21.323 hybrid contribution -0.509 -0.637 -0.821 1.157 sum -0.835 17.694 10.066 20.374 Atomic orbital electron populations 1.21952 0.95577 1.02173 1.01170 1.21095 0.95758 0.98907 0.95156 0.91419 1.21667 1.01332 0.94585 0.97018 1.21627 0.96691 0.93424 0.90617 1.62097 1.60071 1.02761 1.01374 1.22436 0.97820 0.98806 0.93624 1.22363 0.96869 0.87101 1.01142 1.21645 0.99489 0.97582 0.95493 1.19072 0.96263 0.89239 0.97012 1.21263 1.22677 0.95222 1.16384 0.92709 1.25027 0.95298 0.97762 0.96424 1.69971 1.33333 1.10801 1.39559 0.86607 0.79539 0.79580 0.82361 1.20668 1.21281 1.19891 1.21704 1.01657 0.98977 0.92358 1.21160 1.00374 0.94706 0.94887 0.91219 1.21818 1.01249 1.00353 0.96982 1.21622 1.00619 0.95210 0.97083 0.92010 0.93025 0.93029 0.92015 0.91203 0.94429 0.91858 0.90775 0.96291 0.90895 0.95662 0.93535 0.92698 0.96674 0.96913 0.93090 0.91120 0.91477 0.93020 0.92577 0.92673 0.91915 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.50 37.16 0.32 -1.05 16 2 C -0.09 -0.84 3.19 -90.62 -0.29 -1.13 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -1.19 4.37 -26.73 -0.12 -1.31 16 5 C 0.08 1.10 1.67 -67.71 -0.11 0.99 16 6 N -0.54 -8.39 4.63 -234.89 -1.09 -9.48 16 7 C 0.02 0.30 8.91 60.07 0.54 0.84 16 8 C 0.05 0.95 4.77 -3.83 -0.02 0.93 16 9 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.11 -1.37 4.28 -26.73 -0.11 -1.48 16 20 C -0.09 -0.94 2.45 -90.62 -0.22 -1.16 16 21 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 22 C -0.15 -1.39 9.19 37.16 0.34 -1.05 16 23 C -0.11 -0.99 4.73 -26.73 -0.13 -1.11 16 24 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.67 6.35 -51.93 -0.33 0.34 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.51 6.43 -51.93 -0.33 0.18 16 30 H 0.06 0.78 6.24 -51.93 -0.32 0.45 16 31 H 0.07 1.13 6.30 -51.93 -0.33 0.80 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 1.32 5.83 -51.93 -0.30 1.02 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.93 6.20 -51.93 -0.32 0.61 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -29.90 338.67 -9.50 -39.40 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -8.74 Total: -4.07 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -0.49 Total: -21.27 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.35 Total: -36.19 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.90 -9.50 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697681625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.708 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds