Wall clock time and date at job start Mon Mar 30 2020 07:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47062 * 2 1 4 4 C 1.53002 * 109.46751 * 240.00052 * 2 1 3 5 5 C 1.50699 * 109.47285 * 65.41713 * 4 2 1 6 6 H 1.08009 * 119.99855 * 355.87521 * 5 4 2 7 7 C 1.37878 * 120.00325 * 175.88016 * 5 4 2 8 8 N 1.31517 * 119.99904 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99880 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47546 * 270.00294 * 9 7 5 11 11 H 1.48507 * 109.47162 * 30.00278 * 9 7 5 12 12 H 1.48498 * 109.47263 * 150.00141 * 9 7 5 13 13 N 1.46897 * 109.46966 * 120.00656 * 2 1 3 14 14 C 1.46897 * 110.99901 * 177.09758 * 13 2 1 15 15 C 1.46902 * 110.99702 * 301.04518 * 13 2 1 16 16 C 1.52995 * 109.47642 * 295.00345 * 15 13 2 17 17 C 1.52992 * 109.47446 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47281 * 300.00172 * 17 16 15 19 19 C 1.52995 * 109.47446 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47233 * 59.99987 * 17 16 15 21 21 C 1.53009 * 109.46900 * 300.00189 * 20 17 16 22 22 H 1.08994 * 109.46783 * 179.97438 * 21 20 17 23 23 C 1.52993 * 109.46936 * 299.99564 * 21 20 17 24 24 C 1.52998 * 109.46882 * 174.99906 * 15 13 2 25 25 H 1.09003 * 109.47003 * 59.99590 * 1 2 3 26 26 H 1.09003 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46661 * 299.99988 * 1 2 3 28 28 H 1.08996 * 109.47552 * 305.41535 * 4 2 1 29 29 H 1.09001 * 109.47169 * 185.41263 * 4 2 1 30 30 H 0.97002 * 119.99569 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47299 * 54.07395 * 14 13 2 32 32 H 1.09004 * 109.47140 * 174.07830 * 14 13 2 33 33 H 1.08999 * 109.47099 * 294.07214 * 14 13 2 34 34 H 1.09002 * 109.46604 * 55.00511 * 15 13 2 35 35 H 1.08999 * 109.46840 * 300.00395 * 16 15 13 36 36 H 1.09003 * 109.47058 * 59.99868 * 16 15 13 37 37 H 1.09002 * 109.47257 * 299.99931 * 19 17 16 38 38 H 1.09003 * 109.47058 * 60.00033 * 19 17 16 39 39 H 1.09001 * 109.47477 * 180.02562 * 19 17 16 40 40 H 1.08998 * 109.47338 * 180.02562 * 20 17 16 41 41 H 1.08999 * 109.46740 * 59.99632 * 20 17 16 42 42 H 1.09003 * 109.46750 * 180.02562 * 23 21 20 43 43 H 1.08998 * 109.47523 * 300.00061 * 23 21 20 44 44 H 1.09003 * 109.47095 * 60.00228 * 23 21 20 45 45 H 1.09001 * 109.47671 * 300.00071 * 24 15 13 46 46 H 1.09002 * 109.47007 * 60.00852 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6501 0.0623 -2.4761 6 1 1.0376 0.9467 -2.3799 7 6 2.0752 -0.3497 -3.7213 8 7 1.7346 0.3340 -4.7919 9 14 3.1350 -1.8789 -3.8876 10 1 4.5682 -1.5002 -3.7977 11 1 2.8052 -2.8308 -2.7965 12 1 2.8743 -2.5214 -5.2007 13 7 2.0197 -0.6926 1.1993 14 6 3.4865 -0.7727 1.1991 15 6 1.5283 -0.0412 2.4209 16 6 2.1177 1.3672 2.5204 17 6 1.6054 2.0458 3.7922 18 1 0.5176 2.1088 3.7576 19 6 2.1952 3.4540 3.8920 20 6 2.0303 1.2278 5.0134 21 6 1.4408 -0.1807 4.9139 22 1 1.7439 -0.7636 5.7836 23 6 -0.0858 -0.0923 4.8654 24 6 1.9537 -0.8595 3.6417 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.5996 -1.7171 -1.2992 29 1 3.1257 -0.8060 -1.2022 30 1 2.0334 0.0438 -5.6680 31 1 3.9049 0.2262 1.0751 32 1 3.8275 -1.1947 2.1444 33 1 3.8155 -1.4089 0.3775 34 1 0.4406 0.0217 2.3867 35 1 3.2053 1.3043 2.5545 36 1 1.8146 1.9502 1.6506 37 1 3.2828 3.3907 3.9269 38 1 1.8929 4.0371 3.0221 39 1 1.8306 3.9373 4.7984 40 1 1.6649 1.7110 5.9195 41 1 3.1179 1.1649 5.0479 42 1 -0.5057 -1.0958 4.7950 43 1 -0.4508 0.3911 5.7715 44 1 -0.3885 0.4905 3.9954 45 1 1.5337 -1.8629 3.5709 46 1 3.0413 -0.9223 3.6759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697692530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:47 Heat of formation + Delta-G solvation = -25.245744 kcal Electronic energy + Delta-G solvation = -20412.514808 eV Core-core repulsion = 17721.920198 eV Total energy + Delta-G solvation = -2690.594609 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00227 -36.88724 -33.30866 -33.05558 -31.39675 -29.28222 -27.77911 -26.78673 -26.41250 -24.69714 -23.27893 -21.58726 -20.49148 -18.84145 -18.33544 -16.97238 -15.68440 -15.21565 -14.77154 -14.41706 -14.15971 -13.99084 -13.80078 -13.46874 -13.19988 -12.84223 -12.52658 -12.29377 -12.13055 -11.89379 -11.72773 -11.63374 -11.48695 -11.22553 -11.15361 -10.94906 -10.85110 -10.72648 -10.54283 -10.36904 -10.14582 -9.88238 -9.85881 -9.62243 -9.40389 -9.08525 -8.49019 -7.63137 -6.01119 -3.98034 3.33170 3.41056 3.47136 4.37937 4.48972 4.63772 4.75029 4.90253 5.09917 5.13725 5.26984 5.33255 5.39714 5.54109 5.59247 5.60925 5.66837 5.71285 5.71869 5.79853 5.87228 5.93074 5.95201 5.97333 6.02151 6.10037 6.16387 6.22226 6.25351 6.27905 6.32725 6.37891 6.39609 6.51454 6.61164 6.72243 6.86484 7.08035 7.20759 7.41328 7.69413 7.76462 7.94232 8.57685 9.03601 9.62030 11.12190 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.005290 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.808045 B = 5291.387829 C = 5488.078414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.093 3.907 3 H 0.036 0.964 4 C -0.005 4.005 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.877 3.123 10 H -0.279 1.279 11 H -0.264 1.264 12 H -0.289 1.289 13 N -0.536 5.536 14 C 0.020 3.980 15 C 0.080 3.920 16 C -0.148 4.148 17 C -0.089 4.089 18 H 0.071 0.929 19 C -0.147 4.147 20 C -0.108 4.108 21 C -0.090 4.090 22 H 0.066 0.934 23 C -0.150 4.150 24 C -0.107 4.107 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.021 0.979 29 H 0.013 0.987 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 0.781 20.239 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.014 4.014 3 H 0.054 0.946 4 C -0.042 4.042 5 C -0.553 4.553 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.188 1.188 12 H -0.215 1.215 13 N -0.258 5.258 14 C -0.128 4.128 15 C -0.028 4.028 16 C -0.187 4.187 17 C -0.108 4.108 18 H 0.089 0.911 19 C -0.204 4.204 20 C -0.145 4.145 21 C -0.109 4.109 22 H 0.084 0.916 23 C -0.208 4.208 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.148 0.287 20.010 20.013 hybrid contribution 0.991 0.120 -0.313 1.046 sum 1.139 0.407 19.698 19.735 Atomic orbital electron populations 1.21782 0.95205 1.01536 1.00460 1.21624 0.95044 0.95528 0.89200 0.94602 1.19655 0.95680 0.96574 0.92333 1.21115 1.32634 1.11990 0.89576 0.90958 1.24986 0.95933 0.96614 0.95855 1.69916 1.46400 1.39785 0.98332 0.86813 0.80976 0.84239 0.77506 1.20461 1.18847 1.21492 1.62357 1.09078 1.52446 1.01961 1.22423 0.88670 1.00058 1.01635 1.21797 1.00259 0.90872 0.89900 1.22289 1.00990 0.97887 0.97507 1.21108 1.00417 0.94391 0.94878 0.91072 1.21833 1.00793 0.96485 1.01317 1.21621 1.00289 0.95104 0.97489 1.21095 0.95769 0.96117 0.97878 0.91584 1.21936 0.95373 1.01776 1.01669 1.21657 1.00613 0.99104 0.93076 0.91250 0.92819 0.94714 0.96050 0.96871 0.92829 0.95793 0.92243 0.91224 0.89538 0.92012 0.91562 0.92972 0.92694 0.93073 0.92417 0.92284 0.92764 0.93221 0.91939 0.91441 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.75 37.16 0.33 -2.20 16 2 C 0.09 1.89 1.77 -67.71 -0.12 1.77 16 3 H 0.04 0.77 6.49 -51.93 -0.34 0.43 16 4 C 0.00 -0.12 3.35 -27.88 -0.09 -0.21 16 5 C -0.51 -14.60 9.04 -34.44 -0.31 -14.91 16 6 H 0.07 2.19 7.18 -52.48 -0.38 1.81 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 9 Si 0.88 22.05 27.39 -169.99 -4.66 17.39 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.26 -6.46 6.66 56.52 0.38 -6.08 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.54 -9.27 4.62 -226.91 -1.05 -10.32 16 14 C 0.02 0.33 8.08 60.06 0.49 0.82 16 15 C 0.08 1.14 1.67 -67.71 -0.11 1.02 16 16 C -0.15 -1.99 3.79 -26.74 -0.10 -2.09 16 17 C -0.09 -0.98 2.45 -90.62 -0.22 -1.20 16 18 H 0.07 0.80 6.43 -51.92 -0.33 0.46 16 19 C -0.15 -1.51 9.19 37.16 0.34 -1.17 16 20 C -0.11 -1.06 4.73 -26.72 -0.13 -1.19 16 21 C -0.09 -0.90 3.20 -90.59 -0.29 -1.19 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.47 8.50 37.15 0.32 -1.16 16 24 C -0.11 -1.29 4.56 -26.71 -0.12 -1.41 16 25 H 0.07 1.45 6.89 -51.93 -0.36 1.09 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.57 6.28 -51.93 -0.33 0.24 16 28 H 0.02 0.54 7.49 -51.93 -0.39 0.15 16 29 H 0.01 0.32 5.40 -51.93 -0.28 0.04 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.02 0.39 6.84 -51.93 -0.36 0.03 16 32 H 0.06 0.83 5.87 -51.93 -0.30 0.52 16 33 H 0.07 1.23 6.48 -51.93 -0.34 0.89 16 34 H 0.09 1.26 4.30 -51.93 -0.22 1.04 16 35 H 0.06 0.85 6.61 -51.93 -0.34 0.51 16 36 H 0.07 1.02 6.54 -51.93 -0.34 0.68 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.74 6.23 -51.93 -0.32 0.42 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -29.56 324.96 -8.43 -37.98 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.26 Total: -1.45 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -0.13 Total: -21.26 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.27 Total: -37.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.66 Total: 17.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.56 -8.43 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697692530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.737 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds