Wall clock time and date at job start Mon Mar 30 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47062 * 2 1 4 4 C 1.53002 * 109.46751 * 240.00052 * 2 1 3 5 5 C 1.50699 * 109.47285 * 65.41713 * 4 2 1 6 6 H 1.08009 * 119.99855 * 355.87521 * 5 4 2 7 7 C 1.37878 * 120.00325 * 175.88016 * 5 4 2 8 8 N 1.31517 * 119.99904 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99880 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47546 * 270.00294 * 9 7 5 11 11 H 1.48507 * 109.47162 * 30.00278 * 9 7 5 12 12 H 1.48498 * 109.47263 * 150.00141 * 9 7 5 13 13 N 1.46897 * 109.46966 * 120.00656 * 2 1 3 14 14 C 1.46897 * 110.99901 * 177.09758 * 13 2 1 15 15 C 1.46902 * 110.99702 * 301.04518 * 13 2 1 16 16 C 1.52995 * 109.47642 * 295.00345 * 15 13 2 17 17 C 1.52992 * 109.47446 * 179.97438 * 16 15 13 18 18 H 1.09007 * 109.47281 * 300.00172 * 17 16 15 19 19 C 1.52995 * 109.47446 * 179.97438 * 17 16 15 20 20 C 1.53005 * 109.47233 * 59.99987 * 17 16 15 21 21 C 1.53009 * 109.46900 * 300.00189 * 20 17 16 22 22 H 1.08994 * 109.46783 * 179.97438 * 21 20 17 23 23 C 1.52993 * 109.46936 * 299.99564 * 21 20 17 24 24 C 1.52998 * 109.46882 * 174.99906 * 15 13 2 25 25 H 1.09003 * 109.47003 * 59.99590 * 1 2 3 26 26 H 1.09003 * 109.47095 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46661 * 299.99988 * 1 2 3 28 28 H 1.08996 * 109.47552 * 305.41535 * 4 2 1 29 29 H 1.09001 * 109.47169 * 185.41263 * 4 2 1 30 30 H 0.97002 * 119.99569 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47299 * 54.07395 * 14 13 2 32 32 H 1.09004 * 109.47140 * 174.07830 * 14 13 2 33 33 H 1.08999 * 109.47099 * 294.07214 * 14 13 2 34 34 H 1.09002 * 109.46604 * 55.00511 * 15 13 2 35 35 H 1.08999 * 109.46840 * 300.00395 * 16 15 13 36 36 H 1.09003 * 109.47058 * 59.99868 * 16 15 13 37 37 H 1.09002 * 109.47257 * 299.99931 * 19 17 16 38 38 H 1.09003 * 109.47058 * 60.00033 * 19 17 16 39 39 H 1.09001 * 109.47477 * 180.02562 * 19 17 16 40 40 H 1.08998 * 109.47338 * 180.02562 * 20 17 16 41 41 H 1.08999 * 109.46740 * 59.99632 * 20 17 16 42 42 H 1.09003 * 109.46750 * 180.02562 * 23 21 20 43 43 H 1.08998 * 109.47523 * 300.00061 * 23 21 20 44 44 H 1.09003 * 109.47095 * 60.00228 * 23 21 20 45 45 H 1.09001 * 109.47671 * 300.00071 * 24 15 13 46 46 H 1.09002 * 109.47007 * 60.00852 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6501 0.0623 -2.4761 6 1 1.0376 0.9467 -2.3799 7 6 2.0752 -0.3497 -3.7213 8 7 1.7346 0.3340 -4.7919 9 14 3.1350 -1.8789 -3.8876 10 1 4.5682 -1.5002 -3.7977 11 1 2.8052 -2.8308 -2.7965 12 1 2.8743 -2.5214 -5.2007 13 7 2.0197 -0.6926 1.1993 14 6 3.4865 -0.7727 1.1991 15 6 1.5283 -0.0412 2.4209 16 6 2.1177 1.3672 2.5204 17 6 1.6054 2.0458 3.7922 18 1 0.5176 2.1088 3.7576 19 6 2.1952 3.4540 3.8920 20 6 2.0303 1.2278 5.0134 21 6 1.4408 -0.1807 4.9139 22 1 1.7439 -0.7636 5.7836 23 6 -0.0858 -0.0923 4.8654 24 6 1.9537 -0.8595 3.6417 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.5996 -1.7171 -1.2992 29 1 3.1257 -0.8060 -1.2022 30 1 2.0334 0.0438 -5.6680 31 1 3.9049 0.2262 1.0751 32 1 3.8275 -1.1947 2.1444 33 1 3.8155 -1.4089 0.3775 34 1 0.4406 0.0217 2.3867 35 1 3.2053 1.3043 2.5545 36 1 1.8146 1.9502 1.6506 37 1 3.2828 3.3907 3.9269 38 1 1.8929 4.0371 3.0221 39 1 1.8306 3.9373 4.7984 40 1 1.6649 1.7110 5.9195 41 1 3.1179 1.1649 5.0479 42 1 -0.5057 -1.0958 4.7950 43 1 -0.4508 0.3911 5.7715 44 1 -0.3885 0.4905 3.9954 45 1 1.5337 -1.8629 3.5709 46 1 3.0413 -0.9223 3.6759 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697692530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:46 Heat of formation + Delta-G solvation = -42.354872 kcal Electronic energy + Delta-G solvation = -20413.256715 eV Core-core repulsion = 17721.920198 eV Total energy + Delta-G solvation = -2691.336517 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10535 -38.20033 -35.15019 -34.05391 -33.16789 -30.53795 -29.57914 -27.62188 -27.32209 -26.05229 -25.12456 -22.77396 -21.63336 -20.28529 -19.40867 -19.05446 -16.93448 -16.47554 -16.21377 -15.85783 -15.54145 -15.33709 -14.91311 -14.68359 -14.43530 -14.28214 -13.95813 -13.56168 -13.41287 -13.12821 -13.06713 -12.91328 -12.73069 -12.60280 -12.47475 -12.31567 -12.12202 -11.90375 -11.82837 -11.69216 -11.49964 -11.48362 -11.22437 -11.03995 -10.97484 -10.73199 -10.65325 -9.03442 -8.28217 -6.30448 1.33602 1.36216 1.48989 2.36205 3.06282 3.08292 3.72413 3.83567 3.95815 4.15575 4.22778 4.27517 4.27946 4.41229 4.45721 4.53109 4.58179 4.63825 4.67878 4.75313 4.78324 4.83603 4.87284 4.96262 4.97002 5.04409 5.08271 5.09931 5.16195 5.18855 5.22213 5.25343 5.32140 5.35695 5.39888 5.44912 5.49463 5.51789 5.59968 5.65788 5.69772 6.20110 6.37524 6.41010 6.76681 7.33301 8.88313 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.031566 B = 0.005290 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.808045 B = 5291.387829 C = 5488.078414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.102 3.898 3 H 0.020 0.980 4 C 0.002 3.998 5 C -0.520 4.520 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.951 5.951 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.251 1.251 12 H -0.284 1.284 13 N -0.540 5.540 14 C 0.021 3.979 15 C 0.081 3.919 16 C -0.142 4.142 17 C -0.086 4.086 18 H 0.071 0.929 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.085 4.085 22 H 0.083 0.917 23 C -0.150 4.150 24 C -0.101 4.101 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.265 0.735 31 H 0.019 0.981 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 -0.396 22.993 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.006 4.006 3 H 0.038 0.962 4 C -0.036 4.036 5 C -0.558 4.558 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.175 1.175 12 H -0.209 1.209 13 N -0.263 5.263 14 C -0.127 4.127 15 C -0.027 4.027 16 C -0.181 4.181 17 C -0.105 4.105 18 H 0.089 0.911 19 C -0.203 4.203 20 C -0.141 4.141 21 C -0.104 4.104 22 H 0.101 0.899 23 C -0.207 4.207 24 C -0.139 4.139 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.919 -0.886 22.792 22.827 hybrid contribution 0.700 0.566 -1.151 1.461 sum 1.619 -0.320 21.641 21.704 Atomic orbital electron populations 1.21670 0.94522 1.01535 1.00454 1.21336 0.95575 0.94336 0.89355 0.96249 1.19539 0.95792 0.95820 0.92426 1.21390 1.31714 1.11201 0.91540 0.94579 1.25906 0.97494 1.00123 0.95425 1.70060 1.48144 1.41946 0.99036 0.85730 0.79321 0.80137 0.77910 1.19270 1.17473 1.20946 1.62313 1.09801 1.52320 1.01860 1.22447 0.87972 0.99686 1.02623 1.21880 0.99969 0.91509 0.89352 1.22210 1.00679 0.97331 0.97916 1.21086 1.00344 0.94843 0.94189 0.91112 1.21819 1.00834 0.95967 1.01674 1.21601 1.00444 0.94760 0.97267 1.21086 0.95857 0.96223 0.97213 0.89870 1.21929 0.95188 1.01764 1.01854 1.21623 1.00781 0.98667 0.92827 0.93951 0.92692 0.92030 0.96610 0.96512 0.92593 0.96272 0.89387 0.92675 0.89953 0.92367 0.94244 0.92906 0.93816 0.91351 0.90697 0.92093 0.92762 0.91795 0.93123 0.91746 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 8.75 71.98 0.63 -4.18 16 2 C 0.10 4.18 1.77 44.92 0.08 4.26 16 3 H 0.02 0.86 6.49 -2.39 -0.02 0.85 16 4 C 0.00 0.09 3.35 29.85 0.10 0.19 16 5 C -0.52 -30.44 9.04 25.60 0.23 -30.20 16 6 H 0.04 2.31 7.18 -2.91 -0.02 2.29 16 7 C 0.01 0.42 5.47 84.65 0.46 0.89 16 8 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 9 Si 0.95 45.57 27.39 68.60 1.88 47.45 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.25 -11.49 6.66 99.48 0.66 -10.83 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.54 -18.18 4.62 -871.80 -4.03 -22.20 16 14 C 0.02 0.65 8.08 127.69 1.03 1.68 16 15 C 0.08 2.17 1.67 44.91 0.08 2.25 16 16 C -0.14 -3.71 3.79 30.59 0.12 -3.60 16 17 C -0.09 -1.73 2.45 -10.80 -0.03 -1.75 16 18 H 0.07 1.45 6.43 -2.38 -0.02 1.44 16 19 C -0.15 -2.74 9.19 71.98 0.66 -2.08 16 20 C -0.10 -1.70 4.73 30.60 0.14 -1.56 16 21 C -0.08 -1.43 3.20 -10.78 -0.03 -1.46 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 C -0.15 -2.51 8.50 71.98 0.61 -1.90 16 24 C -0.10 -2.17 4.56 30.61 0.14 -2.03 16 25 H 0.04 1.84 6.89 -2.39 -0.02 1.82 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 2.01 6.28 -2.39 -0.01 1.99 16 28 H 0.02 0.78 7.49 -2.39 -0.02 0.76 16 29 H 0.02 0.80 5.40 -2.39 -0.01 0.79 16 30 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.02 0.61 6.84 -2.39 -0.02 0.59 16 32 H 0.09 2.23 5.87 -2.38 -0.01 2.22 16 33 H 0.05 1.88 6.48 -2.39 -0.02 1.86 16 34 H 0.08 2.29 4.30 -2.39 -0.01 2.28 16 35 H 0.06 1.55 6.61 -2.39 -0.02 1.53 16 36 H 0.04 1.23 6.54 -2.39 -0.02 1.21 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 0.96 4.81 -2.39 -0.01 0.95 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.34 6.23 -2.39 -0.01 1.33 16 Total: -1.00 -64.64 324.96 3.26 -61.38 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.88 Total: 13.04 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 4.22 Total: -39.50 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -3.73 Total: -82.37 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -64.64 3.26 -61.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697692530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.021 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds