Wall clock time and date at job start Mon Mar 30 2020 07:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46754 * 2 1 4 4 C 1.50696 * 109.47190 * 239.99490 * 2 1 3 5 5 H 1.08003 * 119.99897 * 239.99588 * 4 2 1 6 6 C 1.37882 * 119.99801 * 60.00215 * 4 2 1 7 7 N 1.31519 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99803 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47395 * 89.99607 * 8 6 4 10 10 H 1.48502 * 109.47073 * 209.99893 * 8 6 4 11 11 H 1.48507 * 109.46995 * 329.99721 * 8 6 4 12 12 N 1.46907 * 109.46944 * 119.99371 * 2 1 3 13 13 C 1.46893 * 110.99643 * 178.42690 * 12 2 1 14 14 C 1.46904 * 110.99893 * 302.38497 * 12 2 1 15 15 H 1.08998 * 109.62819 * 53.81010 * 14 12 2 16 16 C 1.50472 * 109.62256 * 174.39524 * 14 12 2 17 17 C 1.54067 * 112.49649 * 213.85908 * 16 14 12 18 18 C 1.54072 * 112.81599 * 318.28290 * 17 16 14 19 19 C 1.50472 * 112.49896 * 318.28362 * 18 17 16 20 20 C 1.52992 * 109.62787 * 334.43822 * 19 18 17 21 21 C 1.52995 * 109.62638 * 213.85708 * 19 18 17 22 22 C 1.54244 * 108.52025 * 94.14993 * 19 18 17 23 23 C 1.45544 * 112.40317 * 280.01064 * 22 19 18 24 24 H 1.09000 * 109.46535 * 178.42000 * 1 2 3 25 25 H 1.08993 * 109.47213 * 298.41675 * 1 2 3 26 26 H 1.09000 * 109.47157 * 58.42075 * 1 2 3 27 27 H 0.96995 * 119.99646 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47362 * 63.95621 * 13 12 2 29 29 H 1.09003 * 109.46812 * 183.94826 * 13 12 2 30 30 H 1.08993 * 109.47639 * 303.95257 * 13 12 2 31 31 H 1.08993 * 108.88145 * 334.63677 * 16 14 12 32 32 H 1.08996 * 108.87697 * 93.08272 * 16 14 12 33 33 H 1.09006 * 108.81363 * 197.42482 * 17 16 14 34 34 H 1.08999 * 108.72577 * 79.08586 * 17 16 14 35 35 H 1.09000 * 108.87764 * 197.50552 * 18 17 16 36 36 H 1.09005 * 108.87381 * 79.06497 * 18 17 16 37 37 H 1.09003 * 109.47309 * 218.14394 * 20 19 18 38 38 H 1.08996 * 109.47724 * 338.15105 * 20 19 18 39 39 H 1.09007 * 109.46987 * 98.15035 * 20 19 18 40 40 H 1.09000 * 109.47596 * 300.96873 * 21 19 18 41 41 H 1.09000 * 109.47366 * 60.97498 * 21 19 18 42 42 H 1.09000 * 109.46760 * 180.97023 * 21 19 18 43 43 H 1.09002 * 108.89012 * 159.26315 * 22 19 18 44 44 H 1.08995 * 108.82185 * 40.71416 * 22 19 18 45 45 H 1.08992 * 108.89661 * 301.18515 * 23 22 19 46 46 H 1.09005 * 108.89596 * 182.69215 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7567 -3.7117 12 7 2.0197 -0.6924 1.1996 13 6 3.4877 -0.7447 1.2148 14 6 1.5026 -0.0598 2.4205 15 1 0.4157 0.0031 2.3681 16 6 1.9087 -0.8712 3.6209 17 6 0.8458 -0.8468 4.7359 18 6 0.2332 0.5511 4.9468 19 6 1.2643 1.6458 4.8925 20 6 2.6338 1.0812 5.2749 21 6 0.8768 2.7652 5.8608 22 6 1.3154 2.1997 3.4539 23 6 2.0975 1.3561 2.5622 24 1 -0.3632 -1.0273 -0.0283 25 1 -0.3633 0.4890 0.9038 26 1 -0.3633 0.5382 -0.8755 27 1 0.7082 1.1606 -3.4844 28 1 3.8867 0.2676 1.2798 29 1 3.8217 -1.3228 2.0764 30 1 3.8440 -1.2175 0.2997 31 1 2.0705 -1.9034 3.3106 32 1 2.8433 -0.4731 4.0158 33 1 1.3069 -1.1728 5.6683 34 1 0.0494 -1.5440 4.4756 35 1 -0.2584 0.5777 5.9193 36 1 -0.5123 0.7300 4.1720 37 1 3.1755 1.8149 5.8720 38 1 2.5014 0.1676 5.8544 39 1 3.2006 0.8590 4.3707 40 1 -0.1031 3.1578 5.5890 41 1 0.8414 2.3711 6.8764 42 1 1.6160 3.5643 5.8067 43 1 1.7571 3.1960 3.4748 44 1 0.2984 2.2728 3.0688 45 1 3.1120 1.2754 2.9522 46 1 2.1358 1.8230 1.5779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697840352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:42 Heat of formation + Delta-G solvation = 10.163617 kcal Electronic energy + Delta-G solvation = -20932.373112 eV Core-core repulsion = 18243.313968 eV Total energy + Delta-G solvation = -2689.059144 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34842 -36.78024 -33.30777 -32.40108 -31.21343 -29.17855 -27.82657 -27.05709 -25.41543 -24.24796 -22.95166 -22.79204 -20.12280 -18.32303 -17.94781 -16.28136 -15.53451 -15.44843 -14.97297 -14.49298 -14.14151 -13.75772 -13.33466 -13.22677 -12.76806 -12.61562 -12.37070 -11.95373 -11.83991 -11.52579 -11.47621 -11.19854 -11.02151 -11.01467 -10.85359 -10.77248 -10.52158 -10.41000 -10.18223 -10.05182 -9.98593 -9.95204 -9.80110 -9.63688 -9.23525 -8.76567 -8.36102 -6.98618 -5.96530 -4.00084 3.33209 3.39457 3.42677 4.44499 4.79712 4.80756 4.96210 5.13248 5.25622 5.35733 5.38830 5.51513 5.55664 5.63414 5.72289 5.78097 5.79084 5.92007 5.99277 6.05978 6.06685 6.20811 6.23434 6.26059 6.34207 6.39926 6.47249 6.49995 6.59276 6.60593 6.63891 6.72276 6.77436 6.87722 6.88373 7.05679 7.15461 7.25121 7.62843 7.83896 7.89256 8.31170 8.41218 8.71487 9.07159 9.64529 11.10285 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.037277 B = 0.005648 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.944785 B = 4956.612100 C = 5148.062804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H 0.002 0.998 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.531 5.531 13 C 0.034 3.966 14 C 0.088 3.912 15 H 0.081 0.919 16 C -0.131 4.131 17 C -0.109 4.109 18 C -0.109 4.109 19 C -0.060 4.060 20 C -0.164 4.164 21 C -0.137 4.137 22 C -0.099 4.099 23 C -0.159 4.159 24 H 0.032 0.968 25 H 0.008 0.992 26 H 0.082 0.918 27 H 0.259 0.741 28 H 0.012 0.988 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 1.458 15.105 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.021 4.021 15 H 0.099 0.901 16 C -0.168 4.168 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.060 4.060 20 C -0.221 4.221 21 C -0.194 4.194 22 C -0.137 4.137 23 C -0.198 4.198 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.629 1.079 14.922 14.974 hybrid contribution 0.512 0.493 -0.909 1.154 sum 1.141 1.571 14.013 14.147 Atomic orbital electron populations 1.21847 0.98013 0.99676 0.99506 1.19236 0.92084 0.92213 0.85996 0.98015 1.21180 1.30766 1.12107 0.89880 0.92016 1.24927 0.95321 0.95089 0.98956 1.69899 1.37131 1.23114 1.23255 0.86552 0.79206 0.79301 0.82644 1.20734 1.21417 1.19993 1.62462 1.07658 1.53060 1.02195 1.22209 0.89527 0.98594 1.01155 1.21417 1.00047 0.90177 0.90437 0.90084 1.21898 0.98982 1.01195 0.94757 1.21844 0.98506 0.96247 0.98067 1.21460 0.97827 0.94303 1.01040 1.20230 0.95638 0.94952 0.95147 1.22677 0.96657 1.00436 1.02285 1.21942 1.01058 0.97968 0.98472 1.20468 1.00841 0.98511 0.93837 1.21269 0.99894 0.98538 1.00084 0.94876 0.97262 0.89949 0.93107 0.96960 0.93912 0.90977 0.91677 0.90899 0.92764 0.92585 0.92856 0.92098 0.94054 0.92095 0.89889 0.92933 0.93055 0.92981 0.93106 0.92373 0.92099 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.71 37.16 0.32 -2.95 16 2 C 0.21 5.31 1.79 -68.86 -0.12 5.18 16 3 H 0.00 0.07 6.28 -51.93 -0.33 -0.26 16 4 C -0.50 -13.79 7.88 -34.44 -0.27 -14.06 16 5 H 0.06 1.70 6.58 -52.48 -0.35 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.69 11.33 55.43 0.63 -25.06 16 8 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.38 4.48 -229.03 -1.03 -12.40 16 13 C 0.03 0.67 8.66 60.06 0.52 1.19 16 14 C 0.09 1.58 1.60 -68.32 -0.11 1.47 16 15 H 0.08 1.56 4.76 -51.93 -0.25 1.31 16 16 C -0.13 -1.96 3.67 -27.44 -0.10 -2.06 16 17 C -0.11 -1.39 5.11 -25.61 -0.13 -1.52 16 18 C -0.11 -1.34 4.72 -27.43 -0.13 -1.47 16 19 C -0.06 -0.73 0.77 -155.13 -0.12 -0.85 16 20 C -0.16 -1.94 7.33 37.15 0.27 -1.66 16 21 C -0.14 -1.45 7.93 37.16 0.29 -1.16 16 22 C -0.10 -1.42 4.46 -29.60 -0.13 -1.55 16 23 C -0.16 -2.67 3.43 -29.60 -0.10 -2.77 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.01 0.19 6.15 -51.93 -0.32 -0.13 16 26 H 0.08 2.23 6.11 -51.93 -0.32 1.91 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.01 0.24 6.71 -51.93 -0.35 -0.11 16 29 H 0.04 0.73 6.97 -51.93 -0.36 0.37 16 30 H 0.07 1.54 6.25 -51.93 -0.32 1.22 16 31 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 32 H 0.07 1.02 4.07 -51.93 -0.21 0.81 16 33 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 36 H 0.06 0.82 6.64 -51.93 -0.34 0.48 16 37 H 0.04 0.45 7.74 -51.93 -0.40 0.04 16 38 H 0.06 0.68 5.56 -51.93 -0.29 0.39 16 39 H 0.08 1.08 3.02 -51.92 -0.16 0.92 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 42 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.05 0.70 7.97 -51.93 -0.41 0.29 16 44 H 0.06 0.88 7.46 -51.93 -0.39 0.50 16 45 H 0.06 0.97 4.89 -51.93 -0.25 0.72 16 46 H 0.07 1.36 5.98 -51.93 -0.31 1.05 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -27.80 312.44 -8.38 -36.18 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.76 Total: 0.78 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 0.10 Total: -20.70 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.40 Total: -37.46 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.80 -8.38 -36.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697840352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.343 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds