Wall clock time and date at job start Mon Mar 30 2020 07:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46754 * 2 1 4 4 C 1.50696 * 109.47190 * 239.99490 * 2 1 3 5 5 H 1.08003 * 119.99897 * 239.99588 * 4 2 1 6 6 C 1.37882 * 119.99801 * 60.00215 * 4 2 1 7 7 N 1.31519 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99803 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47395 * 89.99607 * 8 6 4 10 10 H 1.48502 * 109.47073 * 209.99893 * 8 6 4 11 11 H 1.48507 * 109.46995 * 329.99721 * 8 6 4 12 12 N 1.46907 * 109.46944 * 119.99371 * 2 1 3 13 13 C 1.46893 * 110.99643 * 178.42690 * 12 2 1 14 14 C 1.46904 * 110.99893 * 302.38497 * 12 2 1 15 15 H 1.08998 * 109.62819 * 53.81010 * 14 12 2 16 16 C 1.50472 * 109.62256 * 174.39524 * 14 12 2 17 17 C 1.54067 * 112.49649 * 213.85908 * 16 14 12 18 18 C 1.54072 * 112.81599 * 318.28290 * 17 16 14 19 19 C 1.50472 * 112.49896 * 318.28362 * 18 17 16 20 20 C 1.52992 * 109.62787 * 334.43822 * 19 18 17 21 21 C 1.52995 * 109.62638 * 213.85708 * 19 18 17 22 22 C 1.54244 * 108.52025 * 94.14993 * 19 18 17 23 23 C 1.45544 * 112.40317 * 280.01064 * 22 19 18 24 24 H 1.09000 * 109.46535 * 178.42000 * 1 2 3 25 25 H 1.08993 * 109.47213 * 298.41675 * 1 2 3 26 26 H 1.09000 * 109.47157 * 58.42075 * 1 2 3 27 27 H 0.96995 * 119.99646 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.47362 * 63.95621 * 13 12 2 29 29 H 1.09003 * 109.46812 * 183.94826 * 13 12 2 30 30 H 1.08993 * 109.47639 * 303.95257 * 13 12 2 31 31 H 1.08993 * 108.88145 * 334.63677 * 16 14 12 32 32 H 1.08996 * 108.87697 * 93.08272 * 16 14 12 33 33 H 1.09006 * 108.81363 * 197.42482 * 17 16 14 34 34 H 1.08999 * 108.72577 * 79.08586 * 17 16 14 35 35 H 1.09000 * 108.87764 * 197.50552 * 18 17 16 36 36 H 1.09005 * 108.87381 * 79.06497 * 18 17 16 37 37 H 1.09003 * 109.47309 * 218.14394 * 20 19 18 38 38 H 1.08996 * 109.47724 * 338.15105 * 20 19 18 39 39 H 1.09007 * 109.46987 * 98.15035 * 20 19 18 40 40 H 1.09000 * 109.47596 * 300.96873 * 21 19 18 41 41 H 1.09000 * 109.47366 * 60.97498 * 21 19 18 42 42 H 1.09000 * 109.46760 * 180.97023 * 21 19 18 43 43 H 1.09002 * 108.89012 * 159.26315 * 22 19 18 44 44 H 1.08995 * 108.82185 * 40.71416 * 22 19 18 45 45 H 1.08992 * 108.89661 * 301.18515 * 23 22 19 46 46 H 1.09005 * 108.89596 * 182.69215 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6310 -1.7567 -3.7117 12 7 2.0197 -0.6924 1.1996 13 6 3.4877 -0.7447 1.2148 14 6 1.5026 -0.0598 2.4205 15 1 0.4157 0.0031 2.3681 16 6 1.9087 -0.8712 3.6209 17 6 0.8458 -0.8468 4.7359 18 6 0.2332 0.5511 4.9468 19 6 1.2643 1.6458 4.8925 20 6 2.6338 1.0812 5.2749 21 6 0.8768 2.7652 5.8608 22 6 1.3154 2.1997 3.4539 23 6 2.0975 1.3561 2.5622 24 1 -0.3632 -1.0273 -0.0283 25 1 -0.3633 0.4890 0.9038 26 1 -0.3633 0.5382 -0.8755 27 1 0.7082 1.1606 -3.4844 28 1 3.8867 0.2676 1.2798 29 1 3.8217 -1.3228 2.0764 30 1 3.8440 -1.2175 0.2997 31 1 2.0705 -1.9034 3.3106 32 1 2.8433 -0.4731 4.0158 33 1 1.3069 -1.1728 5.6683 34 1 0.0494 -1.5440 4.4756 35 1 -0.2584 0.5777 5.9193 36 1 -0.5123 0.7300 4.1720 37 1 3.1755 1.8149 5.8720 38 1 2.5014 0.1676 5.8544 39 1 3.2006 0.8590 4.3707 40 1 -0.1031 3.1578 5.5890 41 1 0.8414 2.3711 6.8764 42 1 1.6160 3.5643 5.8067 43 1 1.7571 3.1960 3.4748 44 1 0.2984 2.2728 3.0688 45 1 3.1120 1.2754 2.9522 46 1 2.1358 1.8230 1.5779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697840352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:41 Heat of formation + Delta-G solvation = -5.067754 kcal Electronic energy + Delta-G solvation = -20933.033594 eV Core-core repulsion = 18243.313968 eV Total energy + Delta-G solvation = -2689.719626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.58730 -38.33658 -35.12758 -33.64203 -32.73344 -31.01154 -28.87035 -28.33163 -27.11603 -25.94978 -24.40710 -24.01617 -21.81030 -19.79911 -19.01357 -18.31958 -17.13087 -16.68704 -16.37337 -16.03146 -15.47701 -15.40487 -14.77363 -14.55674 -14.10713 -13.95389 -13.72933 -13.62610 -13.00798 -12.97847 -12.83684 -12.70120 -12.55107 -12.53924 -12.37503 -12.18488 -12.11561 -11.96391 -11.77646 -11.65703 -11.54741 -11.16060 -11.04058 -11.01539 -10.78359 -10.47889 -10.42175 -8.74295 -8.09802 -6.20946 1.41326 1.42208 1.52302 2.42745 3.18132 3.49044 3.69752 3.71643 4.01542 4.16656 4.31018 4.35319 4.41938 4.46799 4.57398 4.63104 4.76211 4.78793 4.81909 4.85545 4.91507 4.94311 4.97797 5.05475 5.12374 5.14105 5.17238 5.18960 5.25596 5.27515 5.30270 5.34913 5.39152 5.47268 5.52673 5.58504 5.62140 5.63966 5.78372 5.81403 5.86272 6.29822 6.49995 6.87169 6.96155 7.48134 8.96097 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.037277 B = 0.005648 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.944785 B = 4956.612100 C = 5148.062804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.218 3.782 3 H -0.030 1.030 4 C -0.517 4.517 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.540 5.540 13 C 0.039 3.961 14 C 0.090 3.910 15 H 0.064 0.936 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.109 4.109 19 C -0.055 4.055 20 C -0.163 4.163 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.147 4.147 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.260 0.740 28 H 0.010 0.990 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 0.829 17.199 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.556 4.556 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.263 5.263 13 C -0.109 4.109 14 C -0.018 4.018 15 H 0.082 0.918 16 C -0.163 4.163 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.055 4.055 20 C -0.219 4.219 21 C -0.192 4.192 22 C -0.137 4.137 23 C -0.185 4.185 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.267 0.444 17.035 17.088 hybrid contribution 0.313 0.716 -1.530 1.718 sum 1.580 1.160 15.504 15.628 Atomic orbital electron populations 1.21652 0.97973 0.98887 0.99185 1.18986 0.92047 0.90580 0.87326 1.01279 1.21471 1.30848 1.12102 0.91158 0.92485 1.25715 0.95484 0.95776 1.01894 1.70034 1.38006 1.24311 1.23887 0.85546 0.78858 0.78212 0.78942 1.20233 1.20998 1.19276 1.62410 1.08722 1.52975 1.02211 1.22172 0.88486 0.98753 1.01524 1.21454 0.98917 0.91294 0.90179 0.91786 1.21862 1.00595 0.99833 0.94024 1.21821 0.97807 0.96551 0.98090 1.21467 0.97537 0.94019 1.01600 1.20203 0.96217 0.95489 0.93562 1.22629 0.95935 1.01411 1.01891 1.21917 1.01115 0.97408 0.98736 1.20454 0.99464 0.98480 0.95254 1.21149 1.01054 0.97867 0.98479 0.95504 0.95452 0.92498 0.93074 0.97195 0.90707 0.93005 0.92650 0.89354 0.90252 0.93009 0.90718 0.93890 0.92760 0.90842 0.91338 0.93012 0.91365 0.92607 0.92583 0.93823 0.90913 0.95497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.71 71.98 0.63 -5.47 16 2 C 0.22 11.37 1.79 44.17 0.08 11.45 16 3 H -0.03 -1.75 6.28 -2.39 -0.01 -1.76 16 4 C -0.52 -29.20 7.88 25.60 0.20 -29.00 16 5 H 0.06 3.20 6.58 -2.91 -0.02 3.19 16 6 C 0.01 0.54 5.30 84.66 0.45 0.99 16 7 N -0.92 -54.41 11.33 21.45 0.24 -54.17 16 8 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.54 -23.48 4.48 -878.52 -3.94 -27.42 16 13 C 0.04 1.54 8.66 127.69 1.11 2.65 16 14 C 0.09 3.21 1.60 44.52 0.07 3.28 16 15 H 0.06 2.49 4.76 -2.39 -0.01 2.48 16 16 C -0.13 -3.52 3.67 30.14 0.11 -3.41 16 17 C -0.10 -2.39 5.11 31.32 0.16 -2.23 16 18 C -0.11 -2.42 4.72 30.14 0.14 -2.27 16 19 C -0.05 -1.20 0.77 -52.58 -0.04 -1.24 16 20 C -0.16 -3.28 7.33 71.98 0.53 -2.75 16 21 C -0.13 -2.44 7.93 71.98 0.57 -1.87 16 22 C -0.10 -2.79 4.46 28.74 0.13 -2.66 16 23 C -0.15 -4.97 3.43 28.74 0.10 -4.87 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.03 1.25 6.15 -2.39 -0.01 1.23 16 26 H 0.06 3.20 6.11 -2.39 -0.01 3.18 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.01 0.38 6.71 -2.39 -0.02 0.36 16 29 H 0.07 2.45 6.97 -2.39 -0.02 2.43 16 30 H 0.05 2.24 6.25 -2.39 -0.01 2.22 16 31 H 0.05 1.67 7.66 -2.39 -0.02 1.66 16 32 H 0.09 2.22 4.07 -2.39 -0.01 2.21 16 33 H 0.08 1.46 6.95 -2.38 -0.02 1.44 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 36 H 0.04 1.11 6.64 -2.38 -0.02 1.09 16 37 H 0.05 0.97 7.74 -2.39 -0.02 0.95 16 38 H 0.07 1.32 5.56 -2.39 -0.01 1.30 16 39 H 0.07 1.59 3.02 -2.38 -0.01 1.58 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.03 8.11 -2.39 -0.02 1.01 16 42 H 0.05 0.97 8.13 -2.39 -0.02 0.96 16 43 H 0.06 1.51 7.97 -2.39 -0.02 1.50 16 44 H 0.04 1.35 7.46 -2.39 -0.02 1.33 16 45 H 0.07 2.27 4.89 -2.39 -0.01 2.26 16 46 H 0.03 1.12 5.98 -2.38 -0.01 1.11 16 Total: -1.00 -61.03 312.44 3.51 -57.52 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.95 Total: 14.82 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 4.23 Total: -37.40 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -3.69 Total: -81.59 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.03 3.51 -57.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697840352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.451 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds