Wall clock time and date at job start Mon Mar 30 2020 07:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47762 * 2 1 4 4 C 1.50703 * 109.47267 * 119.99784 * 2 1 3 5 5 H 1.07998 * 120.00173 * 119.99813 * 4 2 1 6 6 C 1.37875 * 119.99808 * 300.00324 * 4 2 1 7 7 N 1.31512 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47202 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47476 * 120.00247 * 8 6 4 11 11 H 1.48511 * 109.47289 * 240.00115 * 8 6 4 12 12 N 1.46904 * 109.47455 * 239.99830 * 2 1 3 13 13 C 1.46903 * 110.99864 * 304.85811 * 12 2 1 14 14 C 1.46893 * 110.99704 * 68.81078 * 12 2 1 15 15 H 1.08998 * 109.62828 * 306.14671 * 14 12 2 16 16 C 1.50471 * 109.63130 * 66.73466 * 14 12 2 17 17 C 1.54068 * 112.49509 * 213.85985 * 16 14 12 18 18 C 1.54064 * 112.81695 * 318.28547 * 17 16 14 19 19 C 1.50476 * 112.49665 * 318.27998 * 18 17 16 20 20 C 1.53000 * 109.62893 * 334.44119 * 19 18 17 21 21 C 1.53003 * 109.62711 * 213.86261 * 19 18 17 22 22 C 1.54236 * 108.52434 * 94.15531 * 19 18 17 23 23 C 1.45547 * 112.40423 * 280.01455 * 22 19 18 24 24 H 1.08997 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47247 * 300.00119 * 1 2 3 26 26 H 1.09000 * 109.47156 * 60.00368 * 1 2 3 27 27 H 0.97008 * 120.00300 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47191 * 192.47943 * 13 12 2 29 29 H 1.09005 * 109.47188 * 312.47706 * 13 12 2 30 30 H 1.09000 * 109.47137 * 72.47701 * 13 12 2 31 31 H 1.08997 * 108.87402 * 334.63618 * 16 14 12 32 32 H 1.08996 * 108.87882 * 93.08416 * 16 14 12 33 33 H 1.09007 * 108.81203 * 79.14687 * 17 16 14 34 34 H 1.09000 * 108.81345 * 197.41669 * 17 16 14 35 35 H 1.09000 * 108.87879 * 79.06136 * 18 17 16 36 36 H 1.09006 * 108.87578 * 197.60614 * 18 17 16 37 37 H 1.09002 * 109.46991 * 218.31857 * 20 19 18 38 38 H 1.08994 * 109.47109 * 338.32057 * 20 19 18 39 39 H 1.09001 * 109.46725 * 98.31940 * 20 19 18 40 40 H 1.08999 * 109.47436 * 300.97156 * 21 19 18 41 41 H 1.09008 * 109.46993 * 60.96623 * 21 19 18 42 42 H 1.08998 * 109.47257 * 180.96913 * 21 19 18 43 43 H 1.09000 * 108.89864 * 159.26253 * 22 19 18 44 44 H 1.09005 * 108.89768 * 40.76868 * 22 19 18 45 45 H 1.08997 * 108.89484 * 182.68631 * 23 22 19 46 46 H 1.09001 * 108.89461 * 301.18490 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.1454 -2.2876 3.6039 10 1 3.1464 -0.1872 4.8166 11 1 1.1659 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1994 13 6 1.4562 -2.0460 -1.2928 14 6 1.7278 0.0841 -2.4116 15 1 0.6639 0.3179 -2.4494 16 6 2.5293 1.3575 -2.4014 17 6 1.7783 2.5320 -3.0572 18 6 1.0356 2.1226 -4.3435 19 6 1.8489 1.1979 -5.2083 20 6 3.3384 1.4152 -4.9343 21 6 1.5476 1.4754 -6.6825 22 6 1.4659 -0.2564 -4.8661 23 6 2.1231 -0.7336 -3.6584 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7087 1.1615 3.4844 28 1 1.9946 -2.6121 -2.0529 29 1 1.5532 -2.5472 -0.3297 30 1 0.4026 -1.9829 -1.5651 31 1 2.7615 1.6197 -1.3692 32 1 3.4625 1.1912 -2.9395 33 1 1.0548 2.9284 -2.3446 34 1 2.4954 3.3163 -3.2997 35 1 0.1060 1.6234 -4.0703 36 1 0.7988 3.0202 -4.9148 37 1 3.8940 1.3440 -5.8694 38 1 3.4872 2.4027 -4.4976 39 1 3.6950 0.6537 -4.2408 40 1 0.4841 1.3276 -6.8701 41 1 1.8191 2.5037 -6.9215 42 1 2.1249 0.7928 -7.3061 43 1 1.7469 -0.9008 -5.6991 44 1 0.3863 -0.3137 -4.7266 45 1 1.8512 -1.7768 -3.4972 46 1 3.2026 -0.6692 -3.7950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697840359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:50 Heat of formation + Delta-G solvation = 12.956082 kcal Electronic energy + Delta-G solvation = -20889.756814 eV Core-core repulsion = 18200.818761 eV Total energy + Delta-G solvation = -2688.938054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.25972 -36.90663 -33.22689 -32.51433 -31.48485 -28.41759 -28.01471 -27.12807 -25.19130 -24.71576 -23.50752 -22.10024 -20.14552 -18.32437 -17.93454 -16.34792 -15.58755 -15.39893 -14.99484 -14.35189 -14.17469 -13.60726 -13.43773 -13.15620 -12.80611 -12.61406 -12.39390 -12.09567 -11.75635 -11.53759 -11.41555 -11.23273 -11.04582 -10.91799 -10.79339 -10.71716 -10.65587 -10.39264 -10.24575 -10.10966 -10.04237 -9.96764 -9.83304 -9.48504 -9.11099 -8.77842 -8.30534 -6.99221 -5.96183 -3.98961 3.32385 3.40315 3.45050 4.44949 4.75616 4.78672 4.96279 5.15616 5.27086 5.36407 5.42085 5.48415 5.63337 5.65187 5.73776 5.79681 5.80749 5.92759 5.99374 6.06461 6.16020 6.20358 6.25392 6.29108 6.30892 6.40443 6.50016 6.53024 6.57919 6.62084 6.69395 6.70809 6.77494 6.86430 6.92360 6.96879 7.09353 7.25162 7.58599 7.78523 7.92674 8.26537 8.48190 8.71414 9.08115 9.65769 11.10907 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.038385 B = 0.005606 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.267082 B = 4993.828282 C = 5216.709454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.209 3.791 3 H 0.043 0.957 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.092 3.908 15 H 0.035 0.965 16 C -0.134 4.134 17 C -0.111 4.111 18 C -0.108 4.108 19 C -0.059 4.059 20 C -0.166 4.166 21 C -0.137 4.137 22 C -0.102 4.102 23 C -0.128 4.128 24 H 0.027 0.973 25 H 0.086 0.914 26 H 0.006 0.994 27 H 0.258 0.742 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 0.930 -15.059 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.061 0.939 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.256 5.256 13 C -0.114 4.114 14 C -0.017 4.017 15 H 0.053 0.947 16 C -0.171 4.171 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.059 4.059 20 C -0.222 4.222 21 C -0.194 4.194 22 C -0.140 4.140 23 C -0.165 4.165 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.398 0.998 -14.871 14.970 hybrid contribution -0.814 -0.291 0.844 1.208 sum 0.584 0.707 -14.027 14.057 Atomic orbital electron populations 1.22374 1.01151 0.99144 1.00269 1.19320 0.89504 0.94885 0.86032 0.93881 1.21183 1.30178 1.12314 0.89741 0.91996 1.24923 0.95343 0.95168 0.98940 1.69903 1.37308 1.23166 1.23131 0.86506 0.78499 0.79701 0.83077 1.19774 1.21128 1.21280 1.62349 1.59041 1.02007 1.02246 1.22244 0.95595 0.92081 1.01505 1.21211 0.97224 0.93217 0.90045 0.94712 1.21877 0.99464 0.93606 1.02122 1.21870 0.99081 0.98055 0.95936 1.21452 0.98771 0.98512 0.95769 1.20230 0.95979 0.95356 0.94377 1.22695 0.94893 1.03387 1.01212 1.21947 1.01019 1.00980 0.95479 1.20529 1.00373 0.95337 0.97739 1.20800 1.01208 1.00247 0.94224 0.95365 0.89571 0.97491 0.93185 0.93636 0.90876 0.97137 0.90757 0.90463 0.92601 0.92644 0.92430 0.92903 0.94092 0.91927 0.89568 0.93077 0.92965 0.92983 0.92813 0.92715 0.91693 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.27 37.15 0.31 -3.88 16 2 C 0.21 5.23 2.12 -68.86 -0.15 5.09 16 3 H 0.04 1.18 6.05 -51.93 -0.31 0.87 16 4 C -0.50 -13.59 7.78 -34.44 -0.27 -13.86 16 5 H 0.06 1.72 7.12 -52.49 -0.37 1.34 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.41 4.56 -229.03 -1.04 -12.46 16 13 C 0.03 0.68 7.67 60.07 0.46 1.14 16 14 C 0.09 1.65 1.46 -68.33 -0.10 1.55 16 15 H 0.04 0.68 5.20 -51.93 -0.27 0.41 16 16 C -0.13 -2.28 4.78 -27.44 -0.13 -2.41 16 17 C -0.11 -1.65 5.11 -25.62 -0.13 -1.78 16 18 C -0.11 -1.40 4.72 -27.44 -0.13 -1.53 16 19 C -0.06 -0.71 0.77 -155.12 -0.12 -0.83 16 20 C -0.17 -1.98 7.33 37.16 0.27 -1.71 16 21 C -0.14 -1.39 7.93 37.16 0.29 -1.10 16 22 C -0.10 -1.31 4.45 -29.60 -0.13 -1.44 16 23 C -0.13 -1.91 4.55 -29.59 -0.13 -2.04 16 24 H 0.03 0.67 6.62 -51.93 -0.34 0.33 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 26 H 0.01 0.14 6.53 -51.93 -0.34 -0.20 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 0.79 6.32 -51.93 -0.33 0.46 16 29 H 0.07 1.58 6.52 -51.93 -0.34 1.24 16 30 H 0.01 0.20 6.96 -51.93 -0.36 -0.16 16 31 H 0.07 1.51 5.84 -51.93 -0.30 1.20 16 32 H 0.08 1.21 4.09 -51.93 -0.21 1.00 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.74 6.95 -51.93 -0.36 0.38 16 35 H 0.06 0.81 6.64 -51.93 -0.34 0.46 16 36 H 0.05 0.62 7.68 -51.93 -0.40 0.22 16 37 H 0.04 0.44 7.74 -51.93 -0.40 0.04 16 38 H 0.06 0.75 5.54 -51.93 -0.29 0.46 16 39 H 0.09 1.12 3.03 -51.93 -0.16 0.97 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.50 8.11 -51.92 -0.42 0.08 16 42 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 43 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 44 H 0.05 0.73 7.47 -51.93 -0.39 0.34 16 45 H 0.06 0.99 5.40 -51.93 -0.28 0.71 16 46 H 0.07 1.02 5.52 -51.93 -0.29 0.73 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -27.70 311.09 -8.45 -36.14 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.64 Total: 1.49 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.42 Total: -37.46 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.70 -8.45 -36.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697840359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.099 kcal (2) G-P(sol) polarization free energy of solvation -27.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds