Wall clock time and date at job start Mon Mar 30 2020 07:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47762 * 2 1 4 4 C 1.50703 * 109.47267 * 119.99784 * 2 1 3 5 5 H 1.07998 * 120.00173 * 119.99813 * 4 2 1 6 6 C 1.37875 * 119.99808 * 300.00324 * 4 2 1 7 7 N 1.31512 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47202 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47476 * 120.00247 * 8 6 4 11 11 H 1.48511 * 109.47289 * 240.00115 * 8 6 4 12 12 N 1.46904 * 109.47455 * 239.99830 * 2 1 3 13 13 C 1.46903 * 110.99864 * 304.85811 * 12 2 1 14 14 C 1.46893 * 110.99704 * 68.81078 * 12 2 1 15 15 H 1.08998 * 109.62828 * 306.14671 * 14 12 2 16 16 C 1.50471 * 109.63130 * 66.73466 * 14 12 2 17 17 C 1.54068 * 112.49509 * 213.85985 * 16 14 12 18 18 C 1.54064 * 112.81695 * 318.28547 * 17 16 14 19 19 C 1.50476 * 112.49665 * 318.27998 * 18 17 16 20 20 C 1.53000 * 109.62893 * 334.44119 * 19 18 17 21 21 C 1.53003 * 109.62711 * 213.86261 * 19 18 17 22 22 C 1.54236 * 108.52434 * 94.15531 * 19 18 17 23 23 C 1.45547 * 112.40423 * 280.01455 * 22 19 18 24 24 H 1.08997 * 109.47308 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47247 * 300.00119 * 1 2 3 26 26 H 1.09000 * 109.47156 * 60.00368 * 1 2 3 27 27 H 0.97008 * 120.00300 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47191 * 192.47943 * 13 12 2 29 29 H 1.09005 * 109.47188 * 312.47706 * 13 12 2 30 30 H 1.09000 * 109.47137 * 72.47701 * 13 12 2 31 31 H 1.08997 * 108.87402 * 334.63618 * 16 14 12 32 32 H 1.08996 * 108.87882 * 93.08416 * 16 14 12 33 33 H 1.09007 * 108.81203 * 79.14687 * 17 16 14 34 34 H 1.09000 * 108.81345 * 197.41669 * 17 16 14 35 35 H 1.09000 * 108.87879 * 79.06136 * 18 17 16 36 36 H 1.09006 * 108.87578 * 197.60614 * 18 17 16 37 37 H 1.09002 * 109.46991 * 218.31857 * 20 19 18 38 38 H 1.08994 * 109.47109 * 338.32057 * 20 19 18 39 39 H 1.09001 * 109.46725 * 98.31940 * 20 19 18 40 40 H 1.08999 * 109.47436 * 300.97156 * 21 19 18 41 41 H 1.09008 * 109.46993 * 60.96623 * 21 19 18 42 42 H 1.08998 * 109.47257 * 180.96913 * 21 19 18 43 43 H 1.09000 * 108.89864 * 159.26253 * 22 19 18 44 44 H 1.09005 * 108.89768 * 40.76868 * 22 19 18 45 45 H 1.08997 * 108.89484 * 182.68631 * 23 22 19 46 46 H 1.09001 * 108.89461 * 301.18490 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.1454 -2.2876 3.6039 10 1 3.1464 -0.1872 4.8166 11 1 1.1659 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1994 13 6 1.4562 -2.0460 -1.2928 14 6 1.7278 0.0841 -2.4116 15 1 0.6639 0.3179 -2.4494 16 6 2.5293 1.3575 -2.4014 17 6 1.7783 2.5320 -3.0572 18 6 1.0356 2.1226 -4.3435 19 6 1.8489 1.1979 -5.2083 20 6 3.3384 1.4152 -4.9343 21 6 1.5476 1.4754 -6.6825 22 6 1.4659 -0.2564 -4.8661 23 6 2.1231 -0.7336 -3.6584 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7087 1.1615 3.4844 28 1 1.9946 -2.6121 -2.0529 29 1 1.5532 -2.5472 -0.3297 30 1 0.4026 -1.9829 -1.5651 31 1 2.7615 1.6197 -1.3692 32 1 3.4625 1.1912 -2.9395 33 1 1.0548 2.9284 -2.3446 34 1 2.4954 3.3163 -3.2997 35 1 0.1060 1.6234 -4.0703 36 1 0.7988 3.0202 -4.9148 37 1 3.8940 1.3440 -5.8694 38 1 3.4872 2.4027 -4.4976 39 1 3.6950 0.6537 -4.2408 40 1 0.4841 1.3276 -6.8701 41 1 1.8191 2.5037 -6.9215 42 1 2.1249 0.7928 -7.3061 43 1 1.7469 -0.9008 -5.6991 44 1 0.3863 -0.3137 -4.7266 45 1 1.8512 -1.7768 -3.4972 46 1 3.2026 -0.6692 -3.7950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697840359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:49 Heat of formation + Delta-G solvation = -2.202058 kcal Electronic energy + Delta-G solvation = -20890.414121 eV Core-core repulsion = 18200.818761 eV Total energy + Delta-G solvation = -2689.595360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48260 -38.49697 -35.04840 -33.72494 -33.04926 -30.26099 -29.10223 -28.22144 -27.28991 -26.11959 -24.90954 -23.36146 -21.81287 -19.89189 -18.95792 -18.30984 -17.16499 -16.73316 -16.55066 -15.83747 -15.48195 -15.09137 -14.86632 -14.59504 -14.09215 -14.01878 -13.82777 -13.57578 -13.08529 -12.94692 -12.91293 -12.61892 -12.54694 -12.50491 -12.39458 -12.28246 -12.09486 -12.06603 -11.92362 -11.58692 -11.37619 -11.12341 -11.07372 -10.84719 -10.78111 -10.54546 -10.32521 -8.73831 -8.09015 -6.19140 1.40881 1.42747 1.54658 2.43750 3.19848 3.38919 3.72566 3.82980 4.01428 4.15666 4.23791 4.33954 4.47159 4.50330 4.60052 4.61685 4.75077 4.75750 4.82388 4.84800 4.88485 4.92361 4.98741 5.01132 5.11027 5.15282 5.16886 5.20326 5.24549 5.29582 5.30986 5.37427 5.45942 5.49425 5.50329 5.58128 5.62456 5.63952 5.74565 5.79988 5.88979 6.28487 6.57311 6.87308 6.96330 7.50040 8.97317 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.038385 B = 0.005606 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.267082 B = 4993.828282 C = 5216.709454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.013 0.987 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.542 5.542 13 C 0.039 3.961 14 C 0.093 3.907 15 H 0.018 0.982 16 C -0.130 4.130 17 C -0.108 4.108 18 C -0.103 4.103 19 C -0.058 4.058 20 C -0.165 4.165 21 C -0.133 4.133 22 C -0.101 4.101 23 C -0.118 4.118 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.011 0.989 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.623 0.290 -17.037 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.031 0.969 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.266 5.266 13 C -0.109 4.109 14 C -0.016 4.016 15 H 0.036 0.964 16 C -0.167 4.167 17 C -0.146 4.146 18 C -0.141 4.141 19 C -0.058 4.058 20 C -0.221 4.221 21 C -0.190 4.190 22 C -0.139 4.139 23 C -0.155 4.155 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.064 0.351 -16.866 16.995 hybrid contribution -1.010 -0.067 1.433 1.754 sum 1.054 0.284 -15.433 15.472 Atomic orbital electron populations 1.22167 1.01038 0.98754 0.99414 1.19036 0.89371 0.93457 0.87282 0.96942 1.21441 1.30205 1.12245 0.91018 0.92649 1.25691 0.95510 0.95843 1.01824 1.70033 1.38169 1.24336 1.23781 0.85506 0.78028 0.78673 0.79402 1.19179 1.20766 1.20780 1.62281 1.59119 1.02783 1.02367 1.22228 0.96066 0.91321 1.01328 1.21301 0.96351 0.93864 0.90053 0.96437 1.21876 1.00624 0.94090 1.00102 1.21831 0.98903 0.97462 0.96362 1.21436 0.98063 0.99550 0.95048 1.20232 0.95711 0.94291 0.95517 1.22636 0.94941 1.02725 1.01771 1.21906 1.01500 1.01821 0.93792 1.20514 0.99767 0.96383 0.97240 1.20736 1.01875 0.99497 0.93370 0.95311 0.92293 0.96343 0.93122 0.90593 0.92965 0.97071 0.94847 0.88735 0.94799 0.90965 0.93753 0.91185 0.92314 0.92167 0.90846 0.92756 0.92161 0.91846 0.90644 0.93306 0.91779 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.84 8.27 71.98 0.60 -7.25 16 2 C 0.22 11.20 2.12 44.17 0.09 11.29 16 3 H 0.01 0.74 6.05 -2.39 -0.01 0.72 16 4 C -0.51 -28.68 7.78 25.60 0.20 -28.48 16 5 H 0.06 3.12 7.12 -2.91 -0.02 3.10 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 N -0.54 -23.51 4.56 -878.52 -4.01 -27.51 16 13 C 0.04 1.52 7.67 127.69 0.98 2.50 16 14 C 0.09 3.33 1.46 44.52 0.06 3.39 16 15 H 0.02 0.70 5.20 -2.39 -0.01 0.69 16 16 C -0.13 -4.48 4.78 30.14 0.14 -4.34 16 17 C -0.11 -3.16 5.11 31.32 0.16 -3.00 16 18 C -0.10 -2.54 4.72 30.14 0.14 -2.39 16 19 C -0.06 -1.21 0.77 -52.58 -0.04 -1.26 16 20 C -0.16 -3.46 7.33 71.98 0.53 -2.93 16 21 C -0.13 -2.21 7.93 71.98 0.57 -1.64 16 22 C -0.10 -2.33 4.45 28.74 0.13 -2.20 16 23 C -0.12 -3.30 4.55 28.74 0.13 -3.17 16 24 H 0.03 1.40 6.62 -2.39 -0.02 1.38 16 25 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 26 H 0.02 0.84 6.53 -2.39 -0.02 0.83 16 27 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 28 H 0.08 2.51 6.32 -2.39 -0.02 2.49 16 29 H 0.05 2.26 6.52 -2.38 -0.02 2.24 16 30 H 0.01 0.42 6.96 -2.39 -0.02 0.41 16 31 H 0.03 1.42 5.84 -2.39 -0.01 1.41 16 32 H 0.09 2.90 4.09 -2.39 -0.01 2.89 16 33 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.07 1.86 6.95 -2.39 -0.02 1.84 16 35 H 0.04 1.20 6.64 -2.39 -0.02 1.19 16 36 H 0.07 1.48 7.68 -2.38 -0.02 1.47 16 37 H 0.06 1.04 7.74 -2.39 -0.02 1.02 16 38 H 0.06 1.30 5.54 -2.39 -0.01 1.28 16 39 H 0.07 1.74 3.03 -2.39 -0.01 1.73 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.92 8.11 -2.38 -0.02 0.90 16 42 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 43 H 0.07 1.46 7.97 -2.39 -0.02 1.44 16 44 H 0.05 1.20 7.47 -2.38 -0.02 1.18 16 45 H 0.06 1.80 5.40 -2.39 -0.01 1.79 16 46 H 0.08 2.06 5.52 -2.39 -0.01 2.04 16 Total: -1.00 -60.51 311.09 3.36 -57.15 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.96 Total: 16.23 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 4.14 Total: -38.48 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.76 Total: -81.48 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.51 3.36 -57.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697840359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.948 kcal (2) G-P(sol) polarization free energy of solvation -60.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds