Wall clock time and date at job start Mon Mar 30 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 108.76579 * 2 1 4 4 C 1.50473 * 108.87808 * 118.51379 * 2 1 3 5 5 C 1.54238 * 108.52192 * 214.92872 * 4 2 1 6 6 C 1.45540 * 112.40895 * 280.01241 * 5 4 2 7 7 C 1.54246 * 112.40390 * 61.94197 * 6 5 4 8 8 H 1.09000 * 109.63140 * 39.91019 * 7 6 5 9 9 N 1.46891 * 109.62976 * 160.30208 * 7 6 5 10 10 C 1.46907 * 111.00033 * 58.56613 * 9 7 6 11 11 C 1.46896 * 111.00141 * 294.60961 * 9 7 6 12 12 C 1.53006 * 109.47501 * 190.00009 * 11 9 7 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.46573 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47487 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47233 * 120.00158 * 18 16 14 21 21 H 1.48508 * 109.46883 * 239.99963 * 18 16 14 22 22 C 1.50475 * 108.67964 * 280.11006 * 7 6 5 23 23 C 1.53811 * 112.64607 * 93.89002 * 22 7 6 24 24 H 1.09000 * 109.47505 * 301.48280 * 1 2 3 25 25 H 1.08996 * 109.47219 * 61.48559 * 1 2 3 26 26 H 1.09003 * 109.46665 * 181.48313 * 1 2 3 27 27 H 1.08995 * 109.62483 * 95.21966 * 4 2 1 28 28 H 1.09000 * 109.78619 * 334.73399 * 4 2 1 29 29 H 1.09007 * 108.89219 * 159.26187 * 5 4 2 30 30 H 1.08999 * 108.82227 * 40.72178 * 5 4 2 31 31 H 1.09001 * 108.89714 * 301.18745 * 6 5 4 32 32 H 1.08996 * 108.82184 * 182.63717 * 6 5 4 33 33 H 1.08996 * 109.46966 * 296.04492 * 10 9 7 34 34 H 1.08998 * 109.47405 * 56.04887 * 10 9 7 35 35 H 1.09001 * 109.46772 * 176.04653 * 10 9 7 36 36 H 1.09000 * 109.47017 * 70.00155 * 11 9 7 37 37 H 1.08996 * 109.47227 * 310.00475 * 11 9 7 38 38 H 1.09000 * 109.46866 * 60.00053 * 12 11 9 39 39 H 1.09001 * 109.46611 * 300.00170 * 12 11 9 40 40 H 1.09000 * 109.47486 * 60.00167 * 13 12 11 41 41 H 1.09001 * 109.47362 * 299.99445 * 13 12 11 42 42 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 43 43 H 1.09003 * 108.87485 * 214.83372 * 22 7 6 44 44 H 1.09008 * 108.87780 * 333.27112 * 22 7 6 45 45 H 1.08995 * 108.90092 * 197.60927 * 23 22 7 46 46 H 1.09004 * 108.56701 * 79.30678 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0321 0.0000 4 6 2.0169 -0.6797 1.2511 5 6 3.3100 0.0200 1.7173 6 6 4.4788 -0.4187 0.9693 7 6 4.3715 -0.0915 -0.5342 8 1 3.9263 0.8951 -0.6634 9 7 5.7092 -0.1125 -1.1406 10 6 6.3478 -1.4234 -0.9618 11 6 6.5508 0.9616 -0.5965 12 6 7.8369 1.0680 -1.4185 13 6 8.7136 2.1863 -0.8513 14 6 9.9800 2.2914 -1.6615 15 1 10.1452 1.6242 -2.4944 16 6 10.9301 3.2362 -1.3359 17 7 10.7313 4.0451 -0.3182 18 14 12.4995 3.3670 -2.3405 19 1 12.4808 2.3503 -3.4226 20 1 12.5938 4.7237 -2.9369 21 1 13.6719 3.1306 -1.4601 22 6 3.5019 -1.1283 -1.1922 23 6 2.0285 -0.6957 -1.2811 24 1 -0.3634 0.5367 0.8764 25 1 -0.3633 0.4906 -0.9030 26 1 -0.3633 -1.0274 0.0266 27 1 2.2237 -1.7290 1.0408 28 1 1.2586 -0.6049 2.0306 29 1 3.4662 -0.1951 2.7744 30 1 3.1929 1.0962 1.5901 31 1 4.5904 -1.4964 1.0889 32 1 5.3618 0.0745 1.3756 33 1 6.5068 -1.6082 0.1006 34 1 5.7037 -2.2005 -1.3734 35 1 7.3067 -1.4341 -1.4800 36 1 6.8001 0.7377 0.4408 37 1 6.0098 1.9066 -0.6442 38 1 7.5876 1.2919 -2.4557 39 1 8.3778 0.1229 -1.3706 40 1 8.9629 1.9620 0.1858 41 1 8.1728 3.1315 -0.8989 42 1 11.3999 4.7094 -0.0891 43 1 3.8767 -1.3159 -2.1985 44 1 3.5601 -2.0532 -0.6183 45 1 1.4126 -1.5759 -1.4654 46 1 1.9186 -0.0084 -2.1199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697847890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:47 Heat of formation + Delta-G solvation = -34.594646 kcal Electronic energy + Delta-G solvation = -19519.602670 eV Core-core repulsion = 16828.602662 eV Total energy + Delta-G solvation = -2691.000008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.89133 -36.87142 -33.90717 -32.96741 -32.09203 -30.49902 -27.35201 -27.01427 -25.62790 -24.27707 -22.70494 -21.81404 -20.44649 -19.64426 -18.67452 -16.30808 -15.92421 -15.36684 -15.06571 -14.91793 -14.40424 -14.19872 -13.98236 -13.47736 -13.24974 -13.02341 -12.77217 -12.42681 -12.26651 -11.87543 -11.74447 -11.57337 -11.47576 -11.11190 -10.95819 -10.91940 -10.75449 -10.59941 -10.50172 -10.45712 -10.37706 -10.26206 -10.17465 -9.53184 -9.26575 -8.99065 -8.30645 -7.89989 -5.95909 -3.97585 3.33703 3.40946 3.45746 4.24778 4.47379 4.50862 4.57589 4.73159 4.99038 5.00146 5.14614 5.28315 5.34120 5.38957 5.40193 5.46345 5.51460 5.58705 5.63158 5.69536 5.79751 5.87052 5.89654 5.92358 5.97370 6.04499 6.09914 6.10490 6.18433 6.19816 6.25501 6.33718 6.35791 6.41260 6.45302 6.78372 6.87432 7.19386 7.47870 7.51888 7.73890 7.89315 8.05269 8.49017 9.10020 9.66223 11.15633 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041610 B = 0.003601 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.756207 B = 7774.822007 C = 7949.594323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.152 4.152 7 C 0.089 3.911 8 H 0.081 0.919 9 N -0.535 5.535 10 C 0.020 3.980 11 C 0.055 3.945 12 C -0.105 4.105 13 C 0.021 3.979 14 C -0.516 4.516 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.111 4.111 23 C -0.107 4.107 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.046 0.954 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.252 -10.807 2.241 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.191 4.191 7 C -0.020 4.020 8 H 0.099 0.901 9 N -0.257 5.257 10 C -0.128 4.128 11 C -0.072 4.072 12 C -0.143 4.143 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.149 4.149 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.215 -10.585 1.813 22.012 hybrid contribution 1.058 0.039 0.484 1.165 sum -18.157 -10.546 2.297 21.122 Atomic orbital electron populations 1.21950 0.95666 1.01450 1.01463 1.20980 0.95150 1.00272 0.94816 0.91277 1.21420 0.96855 0.99913 0.96725 1.20405 0.94801 1.00515 0.99358 1.21178 0.98932 1.01484 0.97546 1.21463 0.90056 0.99731 0.90768 0.90090 1.62440 1.02320 1.04026 1.56961 1.22409 1.00016 0.91052 0.99343 1.22304 0.94970 0.93275 0.96679 1.21647 0.93290 1.00317 0.99000 1.19078 0.93711 0.92788 0.96039 1.21305 1.02820 1.16961 1.14380 0.92647 1.25033 0.98469 0.95812 0.95265 1.69979 1.35122 1.20818 1.27743 0.86551 0.83433 0.77881 0.80239 1.19723 1.21029 1.21090 1.21363 0.93920 0.98013 1.01584 1.21879 0.95536 1.00073 0.97066 0.92868 0.92909 0.92939 0.91852 0.92118 0.92644 0.92146 0.92363 0.91722 0.95820 0.92115 0.91004 0.95174 0.91506 0.92705 0.93513 0.96912 0.96655 0.93143 0.90934 0.92714 0.92377 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.79 37.16 0.33 -0.81 16 2 C -0.09 -0.84 2.20 -91.32 -0.20 -1.04 16 3 H 0.07 0.68 6.64 -51.93 -0.34 0.34 16 4 C -0.11 -1.00 5.13 -27.35 -0.14 -1.14 16 5 C -0.11 -1.16 5.26 -29.60 -0.16 -1.32 16 6 C -0.15 -1.81 3.58 -29.60 -0.11 -1.92 16 7 C 0.09 1.12 1.89 -68.33 -0.13 1.00 16 8 H 0.08 1.09 6.89 -51.93 -0.36 0.73 16 9 N -0.54 -8.20 4.63 -235.63 -1.09 -9.29 16 10 C 0.02 0.28 8.60 60.07 0.52 0.80 16 11 C 0.05 0.99 4.48 -3.82 -0.02 0.97 16 12 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 18 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.11 -1.20 3.68 -27.57 -0.10 -1.30 16 23 C -0.11 -1.00 5.22 -25.75 -0.13 -1.14 16 24 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.58 6.99 -51.93 -0.36 0.21 16 28 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.64 7.47 -51.93 -0.39 0.26 16 31 H 0.06 0.68 6.93 -51.93 -0.36 0.32 16 32 H 0.06 0.89 6.06 -51.93 -0.31 0.57 16 33 H 0.02 0.32 6.95 -51.93 -0.36 -0.04 16 34 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 35 H 0.07 1.08 6.47 -51.93 -0.34 0.75 16 36 H 0.03 0.55 6.55 -51.93 -0.34 0.21 16 37 H 0.07 1.21 8.00 -51.93 -0.42 0.80 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.99 6.55 -51.93 -0.34 0.65 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.07 0.85 7.63 -51.93 -0.40 0.46 16 44 H 0.05 0.57 6.57 -51.92 -0.34 0.23 16 45 H 0.06 0.49 7.98 -51.93 -0.41 0.08 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -29.78 335.49 -9.89 -39.67 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -8.74 Total: -4.11 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.83 Total: -21.64 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.35 Total: -36.00 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.78 -9.89 -39.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697847890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.078 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds