Wall clock time and date at job start Mon Mar 30 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 108.76579 * 2 1 4 4 C 1.50473 * 108.87808 * 118.51379 * 2 1 3 5 5 C 1.54238 * 108.52192 * 214.92872 * 4 2 1 6 6 C 1.45540 * 112.40895 * 280.01241 * 5 4 2 7 7 C 1.54246 * 112.40390 * 61.94197 * 6 5 4 8 8 H 1.09000 * 109.63140 * 39.91019 * 7 6 5 9 9 N 1.46891 * 109.62976 * 160.30208 * 7 6 5 10 10 C 1.46907 * 111.00033 * 58.56613 * 9 7 6 11 11 C 1.46896 * 111.00141 * 294.60961 * 9 7 6 12 12 C 1.53006 * 109.47501 * 190.00009 * 11 9 7 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.46573 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47487 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47233 * 120.00158 * 18 16 14 21 21 H 1.48508 * 109.46883 * 239.99963 * 18 16 14 22 22 C 1.50475 * 108.67964 * 280.11006 * 7 6 5 23 23 C 1.53811 * 112.64607 * 93.89002 * 22 7 6 24 24 H 1.09000 * 109.47505 * 301.48280 * 1 2 3 25 25 H 1.08996 * 109.47219 * 61.48559 * 1 2 3 26 26 H 1.09003 * 109.46665 * 181.48313 * 1 2 3 27 27 H 1.08995 * 109.62483 * 95.21966 * 4 2 1 28 28 H 1.09000 * 109.78619 * 334.73399 * 4 2 1 29 29 H 1.09007 * 108.89219 * 159.26187 * 5 4 2 30 30 H 1.08999 * 108.82227 * 40.72178 * 5 4 2 31 31 H 1.09001 * 108.89714 * 301.18745 * 6 5 4 32 32 H 1.08996 * 108.82184 * 182.63717 * 6 5 4 33 33 H 1.08996 * 109.46966 * 296.04492 * 10 9 7 34 34 H 1.08998 * 109.47405 * 56.04887 * 10 9 7 35 35 H 1.09001 * 109.46772 * 176.04653 * 10 9 7 36 36 H 1.09000 * 109.47017 * 70.00155 * 11 9 7 37 37 H 1.08996 * 109.47227 * 310.00475 * 11 9 7 38 38 H 1.09000 * 109.46866 * 60.00053 * 12 11 9 39 39 H 1.09001 * 109.46611 * 300.00170 * 12 11 9 40 40 H 1.09000 * 109.47486 * 60.00167 * 13 12 11 41 41 H 1.09001 * 109.47362 * 299.99445 * 13 12 11 42 42 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 43 43 H 1.09003 * 108.87485 * 214.83372 * 22 7 6 44 44 H 1.09008 * 108.87780 * 333.27112 * 22 7 6 45 45 H 1.08995 * 108.90092 * 197.60927 * 23 22 7 46 46 H 1.09004 * 108.56701 * 79.30678 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0321 0.0000 4 6 2.0169 -0.6797 1.2511 5 6 3.3100 0.0200 1.7173 6 6 4.4788 -0.4187 0.9693 7 6 4.3715 -0.0915 -0.5342 8 1 3.9263 0.8951 -0.6634 9 7 5.7092 -0.1125 -1.1406 10 6 6.3478 -1.4234 -0.9618 11 6 6.5508 0.9616 -0.5965 12 6 7.8369 1.0680 -1.4185 13 6 8.7136 2.1863 -0.8513 14 6 9.9800 2.2914 -1.6615 15 1 10.1452 1.6242 -2.4944 16 6 10.9301 3.2362 -1.3359 17 7 10.7313 4.0451 -0.3182 18 14 12.4995 3.3670 -2.3405 19 1 12.4808 2.3503 -3.4226 20 1 12.5938 4.7237 -2.9369 21 1 13.6719 3.1306 -1.4601 22 6 3.5019 -1.1283 -1.1922 23 6 2.0285 -0.6957 -1.2811 24 1 -0.3634 0.5367 0.8764 25 1 -0.3633 0.4906 -0.9030 26 1 -0.3633 -1.0274 0.0266 27 1 2.2237 -1.7290 1.0408 28 1 1.2586 -0.6049 2.0306 29 1 3.4662 -0.1951 2.7744 30 1 3.1929 1.0962 1.5901 31 1 4.5904 -1.4964 1.0889 32 1 5.3618 0.0745 1.3756 33 1 6.5068 -1.6082 0.1006 34 1 5.7037 -2.2005 -1.3734 35 1 7.3067 -1.4341 -1.4800 36 1 6.8001 0.7377 0.4408 37 1 6.0098 1.9066 -0.6442 38 1 7.5876 1.2919 -2.4557 39 1 8.3778 0.1229 -1.3706 40 1 8.9629 1.9620 0.1858 41 1 8.1728 3.1315 -0.8989 42 1 11.3999 4.7094 -0.0891 43 1 3.8767 -1.3159 -2.1985 44 1 3.5601 -2.0532 -0.6183 45 1 1.4126 -1.5759 -1.4654 46 1 1.9186 -0.0084 -2.1199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697847890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:46 Heat of formation + Delta-G solvation = -50.591437 kcal Electronic energy + Delta-G solvation = -19520.296343 eV Core-core repulsion = 16828.602662 eV Total energy + Delta-G solvation = -2691.693681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87422 -37.99543 -35.75897 -34.06574 -33.53277 -31.90860 -28.72873 -28.19223 -26.81792 -25.61511 -23.84395 -23.12144 -21.79732 -20.97162 -19.56191 -18.48189 -17.10178 -16.47718 -16.42782 -16.16800 -15.84241 -15.32110 -15.20256 -14.55189 -14.31043 -14.29806 -13.90396 -13.62727 -13.52848 -13.30824 -13.11662 -12.76596 -12.70236 -12.53515 -12.44344 -12.32739 -12.10214 -11.86670 -11.76145 -11.54612 -11.37065 -11.32460 -11.22089 -11.10049 -11.08438 -10.91467 -10.56072 -9.13801 -8.20742 -6.31883 1.39399 1.39859 1.53673 2.40554 3.04251 3.12194 3.62350 3.72970 3.99636 4.13406 4.16815 4.18787 4.25989 4.35090 4.46628 4.48920 4.55301 4.59106 4.65859 4.73671 4.81172 4.83302 4.88454 4.94401 4.99945 5.06211 5.10754 5.13168 5.15776 5.19105 5.23566 5.29237 5.31492 5.38149 5.43189 5.48744 5.52347 5.53503 5.64313 5.74122 5.85280 6.15367 6.26400 6.31453 6.85001 7.37375 8.91501 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041610 B = 0.003601 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.756207 B = 7774.822007 C = 7949.594323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.055 0.945 4 C -0.105 4.105 5 C -0.113 4.113 6 C -0.144 4.144 7 C 0.090 3.910 8 H 0.071 0.929 9 N -0.542 5.542 10 C 0.021 3.979 11 C 0.068 3.932 12 C -0.089 4.089 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.105 4.105 23 C -0.104 4.104 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.025 0.975 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.011 1.011 41 H -0.010 1.010 42 H 0.264 0.736 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.030 -12.196 1.645 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.074 0.926 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.183 4.183 7 C -0.019 4.019 8 H 0.089 0.911 9 N -0.265 5.265 10 C -0.127 4.127 11 C -0.059 4.059 12 C -0.127 4.127 13 C -0.011 4.011 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.203 1.203 22 C -0.143 4.143 23 C -0.142 4.142 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.012 -11.988 1.215 23.360 hybrid contribution 1.275 0.483 0.698 1.532 sum -18.737 -11.505 1.913 22.070 Atomic orbital electron populations 1.21917 0.94452 1.02103 1.01748 1.20963 0.96174 0.99429 0.94663 0.92627 1.21382 0.96150 0.99782 0.96971 1.20396 0.95001 1.00219 0.99498 1.21104 0.98724 1.01625 0.96880 1.21510 0.88725 1.00131 0.91506 0.91094 1.62388 1.02990 1.03836 1.57237 1.22431 0.99899 0.90858 0.99492 1.21992 0.93846 0.94328 0.95783 1.21394 0.94141 0.98355 0.98794 1.18969 0.93954 0.93415 0.94789 1.21717 1.03993 1.17405 1.14872 0.92316 1.26008 1.02322 0.95216 0.96402 1.70108 1.36588 1.21430 1.29321 0.85375 0.78567 0.78263 0.78702 1.18600 1.20247 1.20255 1.21300 0.94419 0.97600 1.00964 1.21855 0.94582 1.00624 0.97141 0.92492 0.92806 0.92065 0.91409 0.90949 0.92083 0.92948 0.91627 0.94029 0.95631 0.89735 0.92258 0.95638 0.92153 0.93155 0.93148 0.99282 0.99135 0.92754 0.91628 0.91700 0.90878 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.79 71.98 0.63 -1.27 16 2 C -0.09 -1.51 2.20 -11.25 -0.02 -1.53 16 3 H 0.06 1.05 6.64 -2.38 -0.02 1.04 16 4 C -0.11 -1.66 5.13 30.20 0.15 -1.50 16 5 C -0.11 -2.21 5.26 28.74 0.15 -2.06 16 6 C -0.14 -3.33 3.58 28.74 0.10 -3.23 16 7 C 0.09 2.21 1.89 44.52 0.08 2.29 16 8 H 0.07 1.90 6.89 -2.39 -0.02 1.88 16 9 N -0.54 -16.40 4.63 -899.39 -4.16 -20.57 16 10 C 0.02 0.57 8.60 127.69 1.10 1.67 16 11 C 0.07 2.52 4.48 86.31 0.39 2.90 16 12 C -0.09 -3.90 5.08 30.60 0.16 -3.74 16 13 C 0.03 1.45 4.97 29.85 0.15 1.60 16 14 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 17 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 18 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 C -0.11 -2.08 3.68 30.05 0.11 -1.97 16 23 C -0.10 -1.73 5.22 31.23 0.16 -1.57 16 24 H 0.06 0.71 8.08 -2.39 -0.02 0.69 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 1.03 6.99 -2.39 -0.02 1.02 16 28 H 0.07 0.99 7.68 -2.39 -0.02 0.98 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 1.10 7.47 -2.39 -0.02 1.09 16 31 H 0.07 1.41 6.93 -2.39 -0.02 1.40 16 32 H 0.04 1.15 6.06 -2.39 -0.01 1.13 16 33 H 0.03 0.68 6.95 -2.39 -0.02 0.66 16 34 H 0.08 1.88 6.76 -2.39 -0.02 1.86 16 35 H 0.06 1.75 6.47 -2.39 -0.02 1.73 16 36 H 0.03 0.96 6.55 -2.39 -0.02 0.94 16 37 H 0.06 2.27 8.00 -2.39 -0.02 2.25 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 2.15 6.55 -2.39 -0.02 2.14 16 40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 41 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.07 1.41 7.63 -2.39 -0.02 1.40 16 44 H 0.06 1.17 6.57 -2.38 -0.02 1.15 16 45 H 0.07 1.03 7.98 -2.39 -0.02 1.01 16 46 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -64.00 335.49 2.91 -61.09 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.90 Total: 9.84 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 3.86 Total: -39.79 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -3.88 Total: -78.41 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.00 2.91 -61.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697847890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.498 kcal (2) G-P(sol) polarization free energy of solvation -64.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds