Wall clock time and date at job start Mon Mar 30 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47168 * 2 1 4 4 C 1.50702 * 109.46997 * 119.99566 * 2 1 3 5 5 H 1.07999 * 120.00380 * 120.00059 * 4 2 1 6 6 C 1.37881 * 120.00095 * 300.00093 * 4 2 1 7 7 N 1.31514 * 120.00234 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99693 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47221 * 89.99927 * 8 6 4 10 10 H 1.48503 * 109.46959 * 209.99933 * 8 6 4 11 11 H 1.48501 * 109.47023 * 329.99876 * 8 6 4 12 12 N 1.46931 * 109.47306 * 239.99273 * 2 1 3 13 13 C 1.44306 * 110.92592 * 298.19941 * 12 2 1 14 14 C 1.53506 * 111.78352 * 220.85726 * 13 12 2 15 15 C 1.56201 * 112.62036 * 326.26008 * 14 13 12 16 16 C 1.54857 * 105.35170 * 197.95898 * 15 14 13 17 17 C 1.50731 * 109.45792 * 83.03895 * 15 14 13 18 18 C 1.50902 * 110.89009 * 311.93901 * 15 14 13 19 19 C 1.54743 * 115.31029 * 89.49714 * 18 15 14 20 20 C 1.56063 * 104.58010 * 182.94519 * 19 18 15 21 21 C 1.51358 * 115.22495 * 67.77410 * 19 18 15 22 22 C 1.46046 * 113.47531 * 295.97621 * 19 18 15 23 23 H 1.09001 * 109.47290 * 300.00541 * 1 2 3 24 24 H 1.08996 * 109.46689 * 60.00742 * 1 2 3 25 25 H 1.09000 * 109.46757 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99877 * 180.02562 * 7 6 4 27 27 H 1.09061 * 109.00430 * 100.04169 * 13 12 2 28 28 H 1.09077 * 108.86777 * 341.66732 * 13 12 2 29 29 H 1.08766 * 109.63836 * 206.05448 * 14 13 12 30 30 H 1.08900 * 109.42832 * 86.08980 * 14 13 12 31 31 H 1.08997 * 109.47401 * 177.49994 * 16 15 14 32 32 H 1.08998 * 109.47132 * 297.50603 * 16 15 14 33 33 H 1.09006 * 109.46938 * 57.50014 * 16 15 14 34 34 H 1.09000 * 109.47217 * 292.47056 * 17 15 14 35 35 H 1.09003 * 109.47230 * 52.46765 * 17 15 14 36 36 H 1.08995 * 109.47091 * 172.47084 * 17 15 14 37 37 H 1.09687 * 108.34133 * 327.72951 * 18 15 14 38 38 H 1.09679 * 108.33103 * 211.27676 * 18 15 14 39 39 H 1.09004 * 109.46932 * 179.41007 * 20 19 18 40 40 H 1.08992 * 109.47399 * 299.41007 * 20 19 18 41 41 H 1.09002 * 109.47337 * 59.41106 * 20 19 18 42 42 H 1.08998 * 109.47713 * 287.75857 * 21 19 18 43 43 H 1.09007 * 109.47089 * 47.75842 * 21 19 18 44 44 H 1.09001 * 109.47599 * 167.75531 * 21 19 18 45 45 H 1.09507 * 107.93352 * 171.30978 * 22 19 18 46 46 H 1.09272 * 108.28226 * 287.44963 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6247 1.2792 2.6540 9 1 -0.8028 0.8728 2.6996 10 1 0.9757 1.9954 3.9067 11 1 0.8470 2.1765 1.4918 12 7 2.0199 -0.6928 -1.1996 13 6 1.5912 -2.0707 -1.2102 14 6 2.7040 -3.0098 -1.6961 15 6 3.6137 -2.3519 -2.7822 16 6 4.3447 -3.5295 -3.4728 17 6 4.6665 -1.5074 -2.1110 18 6 2.7810 -1.6987 -3.8578 19 6 2.4068 -0.2198 -3.5982 20 6 1.4988 0.1735 -4.8050 21 6 3.5648 0.7543 -3.6331 22 6 1.5529 -0.0325 -2.4282 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9033 -0.5275 4.4377 27 1 0.7266 -2.1686 -1.8677 28 1 1.2952 -2.3557 -0.1998 29 1 2.2637 -3.9065 -2.1261 30 1 3.3378 -3.2861 -0.8548 31 1 4.9699 -3.1463 -4.2792 32 1 4.9684 -4.0474 -2.7442 33 1 3.6102 -4.2238 -3.8811 34 1 4.1934 -0.6512 -1.6301 35 1 5.1869 -2.1035 -1.3612 36 1 5.3805 -1.1568 -2.8561 37 1 1.8559 -2.2760 -3.9765 38 1 3.3323 -1.7574 -4.8042 39 1 1.1777 1.2094 -4.6957 40 1 2.0598 0.0631 -5.7329 41 1 0.6247 -0.4773 -4.8293 42 1 4.1803 0.6192 -2.7437 43 1 4.1671 0.5709 -4.5230 44 1 3.1811 1.7742 -3.6579 45 1 1.4735 1.0429 -2.2374 46 1 0.5526 -0.3985 -2.6718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699704323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:56 Heat of formation + Delta-G solvation = 1.612759 kcal Electronic energy + Delta-G solvation = -21323.401955 eV Core-core repulsion = 18633.972018 eV Total energy + Delta-G solvation = -2689.429937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84361 -36.20512 -35.13372 -32.45744 -30.15162 -28.18335 -27.72801 -26.25681 -25.98580 -25.45008 -24.37554 -22.21140 -19.84455 -18.45750 -17.85245 -16.45890 -15.50939 -14.97120 -14.65035 -14.41451 -13.89805 -13.64004 -13.19904 -12.97368 -12.93342 -12.41484 -12.21511 -12.13580 -11.97028 -11.81381 -11.61879 -11.50886 -11.31654 -11.24599 -11.02599 -10.76818 -10.61879 -10.40236 -10.34680 -10.11501 -9.95365 -9.76634 -9.60165 -9.39864 -9.34497 -8.92529 -8.57277 -7.21312 -6.05007 -4.02263 3.26675 3.37522 3.39502 4.41125 4.68451 4.95445 5.07082 5.24503 5.29259 5.40358 5.43980 5.58019 5.75224 5.82802 5.84243 5.91889 5.99430 6.07830 6.08623 6.09219 6.13412 6.17764 6.24640 6.26082 6.28577 6.30697 6.34062 6.39948 6.49572 6.56341 6.58546 6.69127 6.75039 6.79344 6.79578 6.87261 6.99232 7.02901 7.24993 7.38428 7.68392 8.06977 8.26828 8.69756 9.03904 9.57878 11.07918 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.007923 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.035441 B = 3533.059131 C = 4084.214439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.181 3.819 3 H 0.039 0.961 4 C -0.500 4.500 5 H 0.084 0.916 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.298 1.298 11 H -0.268 1.268 12 N -0.502 5.502 13 C 0.059 3.941 14 C -0.101 4.101 15 C -0.041 4.041 16 C -0.152 4.152 17 C -0.137 4.137 18 C -0.075 4.075 19 C -0.046 4.046 20 C -0.154 4.154 21 C -0.139 4.139 22 C 0.063 3.937 23 H 0.042 0.958 24 H 0.028 0.972 25 H 0.052 0.948 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -0.342 -14.954 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.074 3.926 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.102 0.898 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.210 1.210 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.224 5.224 13 C -0.070 4.070 14 C -0.139 4.139 15 C -0.041 4.041 16 C -0.210 4.210 17 C -0.194 4.194 18 C -0.112 4.112 19 C -0.047 4.047 20 C -0.212 4.212 21 C -0.196 4.196 22 C -0.065 4.065 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.036 -0.339 -14.754 14.794 hybrid contribution -1.699 0.699 0.125 1.841 sum -0.663 0.360 -14.629 14.648 Atomic orbital electron populations 1.22865 1.01880 1.00804 0.98809 1.19889 0.88458 0.95391 0.88912 0.94323 1.20959 1.31409 1.13685 0.87763 0.89779 1.24908 0.95883 0.96480 0.95897 1.69881 1.45761 1.40328 0.97840 0.86908 0.80508 0.84101 0.76861 1.20977 1.22564 1.19360 1.61409 1.58611 1.01612 1.00763 1.21766 0.94194 0.89551 1.01527 1.22401 0.97216 0.96575 0.97698 1.20346 0.95054 0.94565 0.94175 1.22614 0.99829 0.98634 0.99896 1.21594 0.96725 1.02079 0.98963 1.21458 0.98936 0.93759 0.97069 1.19677 0.95633 0.95106 0.94277 1.22871 0.99308 1.00799 0.98243 1.21687 0.98144 0.97398 1.02378 1.21026 0.95327 0.99133 0.91003 0.93938 0.95309 0.92900 0.92720 0.96412 0.89575 0.93615 0.92138 0.93626 0.93185 0.93699 0.88262 0.93679 0.94853 0.92886 0.93355 0.93189 0.93189 0.93336 0.90581 0.93591 0.93397 0.92679 0.95675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.97 8.10 37.16 0.30 -3.67 16 2 C 0.18 4.13 1.85 -68.84 -0.13 4.01 16 3 H 0.04 0.93 7.11 -51.93 -0.37 0.56 16 4 C -0.50 -13.47 7.97 -34.44 -0.27 -13.74 16 5 H 0.08 2.47 7.37 -52.49 -0.39 2.09 16 6 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 8 Si 0.89 21.78 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.84 6.87 56.52 0.39 -6.46 16 10 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 12 N -0.50 -9.76 2.24 -233.36 -0.52 -10.29 16 13 C 0.06 1.10 3.66 -4.95 -0.02 1.08 16 14 C -0.10 -1.68 4.84 -24.75 -0.12 -1.80 16 15 C -0.04 -0.61 0.58 -154.00 -0.09 -0.70 16 16 C -0.15 -1.97 7.76 38.14 0.30 -1.67 16 17 C -0.14 -2.19 6.52 36.02 0.24 -1.95 16 18 C -0.07 -1.03 3.21 -26.87 -0.09 -1.11 16 19 C -0.05 -0.65 0.46 -156.08 -0.07 -0.72 16 20 C -0.15 -1.87 7.63 38.80 0.30 -1.57 16 21 C -0.14 -1.88 7.65 36.33 0.28 -1.60 16 22 C 0.06 1.05 2.56 -7.02 -0.02 1.04 16 23 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 24 H 0.03 0.54 7.00 -51.93 -0.36 0.18 16 25 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.32 7.02 -51.89 -0.36 -0.05 16 28 H 0.09 1.88 5.61 -51.89 -0.29 1.59 16 29 H 0.05 0.69 7.67 -52.06 -0.40 0.29 16 30 H 0.06 1.10 7.75 -51.99 -0.40 0.70 16 31 H 0.04 0.54 7.93 -51.93 -0.41 0.13 16 32 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.04 0.54 7.92 -51.93 -0.41 0.13 16 34 H 0.10 1.81 4.27 -51.93 -0.22 1.59 16 35 H 0.04 0.75 7.92 -51.93 -0.41 0.34 16 36 H 0.03 0.47 7.83 -51.93 -0.41 0.07 16 37 H 0.05 0.74 7.70 -51.54 -0.40 0.34 16 38 H 0.05 0.61 7.60 -51.54 -0.39 0.22 16 39 H 0.05 0.58 8.05 -51.93 -0.42 0.17 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.58 7.77 -51.93 -0.40 0.18 16 42 H 0.08 1.14 5.03 -51.93 -0.26 0.88 16 43 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 44 H 0.05 0.62 7.98 -51.93 -0.41 0.20 16 45 H 0.05 0.94 7.48 -51.64 -0.39 0.56 16 46 H 0.03 0.42 6.21 -51.78 -0.32 0.10 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -27.68 315.44 -7.05 -34.72 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.41 Total: -0.01 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 0.50 Total: -20.54 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.25 Total: -36.56 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.68 -7.05 -34.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699704323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.336 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds