Wall clock time and date at job start Mon Mar 30 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47168 * 2 1 4 4 C 1.50702 * 109.46997 * 119.99566 * 2 1 3 5 5 H 1.07999 * 120.00380 * 120.00059 * 4 2 1 6 6 C 1.37881 * 120.00095 * 300.00093 * 4 2 1 7 7 N 1.31514 * 120.00234 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99693 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47221 * 89.99927 * 8 6 4 10 10 H 1.48503 * 109.46959 * 209.99933 * 8 6 4 11 11 H 1.48501 * 109.47023 * 329.99876 * 8 6 4 12 12 N 1.46931 * 109.47306 * 239.99273 * 2 1 3 13 13 C 1.44306 * 110.92592 * 298.19941 * 12 2 1 14 14 C 1.53506 * 111.78352 * 220.85726 * 13 12 2 15 15 C 1.56201 * 112.62036 * 326.26008 * 14 13 12 16 16 C 1.54857 * 105.35170 * 197.95898 * 15 14 13 17 17 C 1.50731 * 109.45792 * 83.03895 * 15 14 13 18 18 C 1.50902 * 110.89009 * 311.93901 * 15 14 13 19 19 C 1.54743 * 115.31029 * 89.49714 * 18 15 14 20 20 C 1.56063 * 104.58010 * 182.94519 * 19 18 15 21 21 C 1.51358 * 115.22495 * 67.77410 * 19 18 15 22 22 C 1.46046 * 113.47531 * 295.97621 * 19 18 15 23 23 H 1.09001 * 109.47290 * 300.00541 * 1 2 3 24 24 H 1.08996 * 109.46689 * 60.00742 * 1 2 3 25 25 H 1.09000 * 109.46757 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99877 * 180.02562 * 7 6 4 27 27 H 1.09061 * 109.00430 * 100.04169 * 13 12 2 28 28 H 1.09077 * 108.86777 * 341.66732 * 13 12 2 29 29 H 1.08766 * 109.63836 * 206.05448 * 14 13 12 30 30 H 1.08900 * 109.42832 * 86.08980 * 14 13 12 31 31 H 1.08997 * 109.47401 * 177.49994 * 16 15 14 32 32 H 1.08998 * 109.47132 * 297.50603 * 16 15 14 33 33 H 1.09006 * 109.46938 * 57.50014 * 16 15 14 34 34 H 1.09000 * 109.47217 * 292.47056 * 17 15 14 35 35 H 1.09003 * 109.47230 * 52.46765 * 17 15 14 36 36 H 1.08995 * 109.47091 * 172.47084 * 17 15 14 37 37 H 1.09687 * 108.34133 * 327.72951 * 18 15 14 38 38 H 1.09679 * 108.33103 * 211.27676 * 18 15 14 39 39 H 1.09004 * 109.46932 * 179.41007 * 20 19 18 40 40 H 1.08992 * 109.47399 * 299.41007 * 20 19 18 41 41 H 1.09002 * 109.47337 * 59.41106 * 20 19 18 42 42 H 1.08998 * 109.47713 * 287.75857 * 21 19 18 43 43 H 1.09007 * 109.47089 * 47.75842 * 21 19 18 44 44 H 1.09001 * 109.47599 * 167.75531 * 21 19 18 45 45 H 1.09507 * 107.93352 * 171.30978 * 22 19 18 46 46 H 1.09272 * 108.28226 * 287.44963 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6247 1.2792 2.6540 9 1 -0.8028 0.8728 2.6996 10 1 0.9757 1.9954 3.9067 11 1 0.8470 2.1765 1.4918 12 7 2.0199 -0.6928 -1.1996 13 6 1.5912 -2.0707 -1.2102 14 6 2.7040 -3.0098 -1.6961 15 6 3.6137 -2.3519 -2.7822 16 6 4.3447 -3.5295 -3.4728 17 6 4.6665 -1.5074 -2.1110 18 6 2.7810 -1.6987 -3.8578 19 6 2.4068 -0.2198 -3.5982 20 6 1.4988 0.1735 -4.8050 21 6 3.5648 0.7543 -3.6331 22 6 1.5529 -0.0325 -2.4282 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9033 -0.5275 4.4377 27 1 0.7266 -2.1686 -1.8677 28 1 1.2952 -2.3557 -0.1998 29 1 2.2637 -3.9065 -2.1261 30 1 3.3378 -3.2861 -0.8548 31 1 4.9699 -3.1463 -4.2792 32 1 4.9684 -4.0474 -2.7442 33 1 3.6102 -4.2238 -3.8811 34 1 4.1934 -0.6512 -1.6301 35 1 5.1869 -2.1035 -1.3612 36 1 5.3805 -1.1568 -2.8561 37 1 1.8559 -2.2760 -3.9765 38 1 3.3323 -1.7574 -4.8042 39 1 1.1777 1.2094 -4.6957 40 1 2.0598 0.0631 -5.7329 41 1 0.6247 -0.4773 -4.8293 42 1 4.1803 0.6192 -2.7437 43 1 4.1671 0.5709 -4.5230 44 1 3.1811 1.7742 -3.6579 45 1 1.4735 1.0429 -2.2374 46 1 0.5526 -0.3985 -2.6718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699704323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:55 Heat of formation + Delta-G solvation = -13.523224 kcal Electronic energy + Delta-G solvation = -21324.058301 eV Core-core repulsion = 18633.972018 eV Total energy + Delta-G solvation = -2690.086283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16771 -37.74452 -36.31295 -34.48974 -31.89661 -29.58793 -28.90014 -27.36281 -27.19299 -27.08219 -25.93919 -23.77910 -21.42332 -19.82432 -19.20200 -18.37724 -17.18650 -16.29929 -16.26184 -15.80244 -15.24656 -15.01979 -14.90283 -14.36403 -14.27089 -14.00703 -13.71480 -13.58035 -13.14512 -13.04102 -12.97801 -12.83246 -12.69009 -12.63550 -12.39516 -12.19713 -12.07239 -11.89032 -11.67579 -11.58182 -11.46663 -11.23454 -11.13722 -10.94766 -10.76665 -10.72416 -10.51231 -8.75673 -8.24507 -6.25030 1.29490 1.35546 1.45056 2.33495 3.09982 3.28124 3.83292 3.89619 4.06915 4.25218 4.28530 4.32503 4.42365 4.46762 4.58594 4.64212 4.71143 4.78482 4.80367 4.87066 4.94326 4.96089 4.96838 5.02931 5.04317 5.06996 5.08812 5.19270 5.19584 5.24830 5.28433 5.37088 5.42248 5.43691 5.48248 5.55104 5.64160 5.67305 5.72604 5.77845 6.06467 6.16978 6.60519 6.80747 6.86047 7.39081 8.92208 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024860 B = 0.007923 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.035441 B = 3533.059131 C = 4084.214439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.185 3.815 3 H 0.031 0.969 4 C -0.492 4.492 5 H 0.042 0.958 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.273 1.273 10 H -0.301 1.301 11 H -0.249 1.249 12 N -0.508 5.508 13 C 0.065 3.935 14 C -0.099 4.099 15 C -0.040 4.040 16 C -0.147 4.147 17 C -0.131 4.131 18 C -0.073 4.073 19 C -0.052 4.052 20 C -0.146 4.146 21 C -0.137 4.137 22 C 0.065 3.935 23 H 0.032 0.968 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.263 0.737 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 0.642 -18.240 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.077 3.923 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.060 0.940 6 C -0.185 4.185 7 N -0.591 5.591 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.229 1.229 11 H -0.173 1.173 12 N -0.229 5.229 13 C -0.064 4.064 14 C -0.137 4.137 15 C -0.040 4.040 16 C -0.204 4.204 17 C -0.188 4.188 18 C -0.110 4.110 19 C -0.053 4.053 20 C -0.204 4.204 21 C -0.194 4.194 22 C -0.062 4.062 23 H 0.051 0.949 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.173 0.645 -18.074 18.087 hybrid contribution -1.360 0.313 1.130 1.795 sum -1.187 0.958 -16.944 17.013 Atomic orbital electron populations 1.22735 1.00308 1.00947 0.99728 1.19665 0.89508 0.94474 0.88701 0.95096 1.21162 1.29880 1.12225 0.89769 0.93955 1.25711 0.97562 0.99699 0.95555 1.70037 1.48067 1.42545 0.98442 0.85902 0.78942 0.80562 0.77148 1.19949 1.22921 1.17348 1.61388 1.58864 1.01783 1.00911 1.21671 0.95530 0.89631 0.99536 1.22375 0.96654 0.97040 0.97663 1.20326 0.94587 0.95247 0.93882 1.22536 1.00035 0.97865 0.99955 1.21510 0.97286 1.01056 0.98957 1.21442 0.99034 0.93318 0.97208 1.19678 0.96050 0.95655 0.93893 1.22776 0.99020 1.00987 0.97656 1.21652 0.97892 0.97554 1.02258 1.21144 0.96237 0.98468 0.90367 0.94894 0.92298 0.93232 0.92791 0.94919 0.93633 0.91731 0.95032 0.91961 0.93949 0.92488 0.90641 0.95614 0.92916 0.92603 0.91143 0.92859 0.91459 0.93125 0.92644 0.91717 0.92945 0.93078 0.95211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.41 8.10 71.98 0.58 -6.83 16 2 C 0.18 8.45 1.85 44.17 0.08 8.54 16 3 H 0.03 1.48 7.11 -2.39 -0.02 1.46 16 4 C -0.49 -27.59 7.97 25.60 0.20 -27.39 16 5 H 0.04 2.67 7.37 -2.91 -0.02 2.65 16 6 C 0.01 0.66 5.45 84.66 0.46 1.12 16 7 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 8 Si 0.95 45.25 24.37 68.60 1.67 46.93 16 9 H -0.27 -12.56 6.87 99.48 0.68 -11.87 16 10 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 11 H -0.25 -11.06 6.53 99.48 0.65 -10.41 16 12 N -0.51 -19.64 2.24 -892.23 -2.00 -21.64 16 13 C 0.07 2.48 3.66 86.96 0.32 2.79 16 14 C -0.10 -3.31 4.84 31.88 0.15 -3.16 16 15 C -0.04 -1.13 0.58 -51.85 -0.03 -1.16 16 16 C -0.15 -3.41 7.76 72.62 0.56 -2.85 16 17 C -0.13 -4.15 6.52 71.25 0.46 -3.69 16 18 C -0.07 -1.75 3.21 30.51 0.10 -1.65 16 19 C -0.05 -1.31 0.46 -53.20 -0.02 -1.33 16 20 C -0.15 -2.92 7.63 73.04 0.56 -2.36 16 21 C -0.14 -3.31 7.65 71.45 0.55 -2.76 16 22 C 0.07 2.03 2.56 84.13 0.22 2.25 16 23 H 0.03 1.42 3.27 -2.39 -0.01 1.41 16 24 H 0.06 2.07 7.00 -2.39 -0.02 2.06 16 25 H 0.05 2.06 6.95 -2.39 -0.02 2.04 16 26 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.03 1.13 7.02 -2.35 -0.02 1.11 16 28 H 0.05 2.08 5.61 -2.35 -0.01 2.07 16 29 H 0.06 1.88 7.67 -2.51 -0.02 1.87 16 30 H 0.03 1.21 7.75 -2.44 -0.02 1.19 16 31 H 0.06 1.26 7.93 -2.39 -0.02 1.24 16 32 H 0.04 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.06 1.20 7.92 -2.38 -0.02 1.18 16 34 H 0.07 2.78 4.27 -2.39 -0.01 2.77 16 35 H 0.02 0.87 7.92 -2.39 -0.02 0.85 16 36 H 0.05 1.43 7.83 -2.39 -0.02 1.41 16 37 H 0.06 1.34 7.70 -2.02 -0.02 1.32 16 38 H 0.07 1.43 7.60 -2.03 -0.02 1.42 16 39 H 0.05 1.03 8.05 -2.39 -0.02 1.01 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 0.99 7.77 -2.39 -0.02 0.98 16 42 H 0.05 1.58 5.03 -2.39 -0.01 1.57 16 43 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.05 1.20 7.98 -2.39 -0.02 1.18 16 45 H 0.05 1.63 7.48 -2.12 -0.02 1.61 16 46 H 0.03 0.90 6.21 -2.24 -0.01 0.89 16 Total: -1.00 -62.01 315.44 5.01 -57.00 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.85 Total: 15.45 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 4.19 Total: -38.47 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.70 Total: -80.91 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.67 Total: 46.93 kcal Total: -62.01 5.01 -57.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699704323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.474 kcal (2) G-P(sol) polarization free energy of solvation -62.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds