Wall clock time and date at job start Mon Mar 30 2020 07:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 C 1.52990 * 109.47054 * 239.99909 * 2 1 3 5 5 C 1.50703 * 109.47292 * 174.99877 * 4 2 1 6 6 H 1.08003 * 119.99334 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00384 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00132 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00251 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47048 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47388 * 119.99678 * 9 7 5 12 12 H 1.48502 * 109.47174 * 239.99609 * 9 7 5 13 13 N 1.46896 * 109.47027 * 119.99475 * 2 1 3 14 14 C 1.46909 * 110.99736 * 58.95995 * 13 2 1 15 15 C 1.46903 * 111.00438 * 295.00467 * 13 2 1 16 16 C 1.53000 * 109.46890 * 190.00137 * 15 13 2 17 17 H 1.09002 * 115.55423 * 3.12919 * 16 15 13 18 18 C 1.53008 * 117.49451 * 217.46343 * 16 15 13 19 19 C 1.53004 * 117.49596 * 148.80587 * 16 15 13 20 20 H 1.09007 * 117.49559 * 214.97437 * 19 16 15 21 21 C 1.52995 * 117.49835 * 359.97438 * 19 16 15 22 22 C 1.52992 * 109.47491 * 47.93465 * 21 19 16 23 23 C 1.53007 * 109.47062 * 167.93440 * 21 19 16 24 24 C 1.53006 * 109.46957 * 287.92926 * 21 19 16 25 25 H 1.09003 * 109.47458 * 299.99927 * 1 2 3 26 26 H 1.09000 * 109.47403 * 59.99786 * 1 2 3 27 27 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47291 * 294.99667 * 4 2 1 29 29 H 1.09004 * 109.47471 * 55.00030 * 4 2 1 30 30 H 0.96994 * 120.00286 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47233 * 59.99455 * 14 13 2 32 32 H 1.08997 * 109.46839 * 179.97438 * 14 13 2 33 33 H 1.09000 * 109.46735 * 299.99214 * 14 13 2 34 34 H 1.08994 * 109.46605 * 309.99648 * 15 13 2 35 35 H 1.08992 * 109.46818 * 70.00140 * 15 13 2 36 36 H 1.08999 * 117.49730 * 359.97438 * 18 16 15 37 37 H 1.08999 * 117.49580 * 144.99778 * 18 16 15 38 38 H 1.09000 * 109.47151 * 45.37450 * 22 21 19 39 39 H 1.09000 * 109.47523 * 165.38422 * 22 21 19 40 40 H 1.09007 * 109.46796 * 285.37966 * 22 21 19 41 41 H 1.09004 * 109.47098 * 59.99685 * 23 21 19 42 42 H 1.08994 * 109.47081 * 179.97438 * 23 21 19 43 43 H 1.08996 * 109.46809 * 300.00032 * 23 21 19 44 44 H 1.09003 * 109.46865 * 58.15080 * 24 21 19 45 45 H 1.08998 * 109.46674 * 178.14338 * 24 21 19 46 46 H 1.08996 * 109.47478 * 298.14497 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2303 -1.1926 -2.3582 8 7 3.5764 -1.8369 -3.3000 9 14 6.0920 -1.0614 -2.4366 10 1 6.5837 -0.2918 -1.2655 11 1 6.6854 -2.4225 -2.4195 12 1 6.4870 -0.3649 -3.6873 13 7 2.0196 -0.6924 1.1995 14 6 1.5283 -2.0761 1.2460 15 6 1.6486 0.0393 2.4181 16 6 2.3789 -0.5661 3.6186 17 1 3.0729 -1.3743 3.3881 18 6 1.6161 -0.6460 4.9426 19 6 2.7452 0.3730 4.7696 20 1 3.6802 0.1824 5.2966 21 6 2.3538 1.8456 4.6317 22 6 0.8929 1.9458 4.1886 23 6 2.5270 2.5478 5.9801 24 6 3.2503 2.5161 3.5887 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1369 30 1 4.0607 -2.2437 -4.0353 31 1 1.8762 -2.6150 0.3648 32 1 1.9060 -2.5657 2.1436 33 1 0.4385 -2.0742 1.2640 34 1 1.9297 1.0870 2.3125 35 1 0.5722 -0.0345 2.5726 36 1 0.5942 -0.2669 4.9583 37 1 1.8084 -1.5068 5.5830 38 1 0.2864 1.2585 4.7785 39 1 0.5368 2.9650 4.3383 40 1 0.8147 1.6850 3.1331 41 1 3.5679 2.4765 6.2958 42 1 2.2486 3.5970 5.8817 43 1 1.8884 2.0701 6.7231 44 1 3.1517 1.9953 2.6362 45 1 2.9499 3.5567 3.4666 46 1 4.2878 2.4739 3.9203 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699735643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:29 Heat of formation + Delta-G solvation = 28.672108 kcal Electronic energy + Delta-G solvation = -20229.723105 eV Core-core repulsion = 17541.466550 eV Total energy + Delta-G solvation = -2688.256556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86876 -37.31481 -33.96283 -32.70403 -30.56449 -28.21931 -27.32096 -27.25702 -26.36448 -24.35143 -22.84776 -22.62493 -20.06759 -18.74851 -18.20196 -16.17681 -16.00755 -15.38200 -14.73575 -14.50033 -14.35779 -13.91265 -13.45163 -13.29092 -13.04113 -12.48796 -12.27533 -12.22162 -12.01621 -11.72291 -11.51126 -11.47942 -11.39217 -11.30521 -10.95545 -10.83077 -10.64198 -10.59834 -10.49544 -10.39407 -10.37072 -9.91218 -9.72328 -9.26217 -9.09666 -8.92373 -8.22928 -7.37087 -5.85831 -3.83309 3.40177 3.47675 3.53655 3.92507 4.52655 4.59559 4.68679 4.85859 5.00068 5.11579 5.24685 5.32821 5.51495 5.53327 5.64075 5.68058 5.70999 5.74325 5.81528 5.84881 5.88979 5.94252 5.95921 6.01218 6.03341 6.07642 6.11502 6.16931 6.17439 6.24991 6.33785 6.45332 6.48027 6.56050 6.66435 6.72023 6.81975 7.03306 7.59052 7.76538 7.98463 8.09502 8.16972 8.62114 9.23409 9.78493 11.26247 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022933 B = 0.005695 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.634240 B = 4915.776372 C = 5394.876168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.514 5.514 14 C 0.025 3.975 15 C 0.068 3.932 16 C -0.129 4.129 17 H 0.110 0.890 18 C -0.190 4.190 19 C -0.139 4.139 20 H 0.098 0.902 21 C -0.035 4.035 22 C -0.175 4.175 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.020 0.980 29 H 0.017 0.983 30 H 0.256 0.744 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.014 0.986 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 5.711 16.391 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.237 5.237 14 C -0.123 4.123 15 C -0.059 4.059 16 C -0.148 4.148 17 H 0.128 0.872 18 C -0.227 4.227 19 C -0.158 4.158 20 H 0.117 0.883 21 C -0.035 4.035 22 C -0.231 4.231 23 C -0.194 4.194 24 C -0.206 4.206 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.032 0.968 34 H 0.110 0.890 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.709 5.607 16.207 17.784 hybrid contribution 0.172 -0.092 0.009 0.196 sum -4.537 5.515 16.216 17.719 Atomic orbital electron populations 1.22533 1.00003 1.01318 1.00540 1.21902 0.89882 0.98342 0.92010 0.91443 1.19233 0.96389 0.95466 0.89857 1.21226 0.91806 1.32729 1.06859 0.92040 1.25003 0.97956 0.95948 0.96020 1.69976 1.35072 1.37133 1.12404 0.86593 0.86554 0.77540 0.77646 1.19756 1.21368 1.21447 1.62136 1.58998 1.01708 1.00832 1.22396 0.96389 0.91038 1.02489 1.22349 0.95650 0.98607 0.89304 1.22402 1.02136 1.01459 0.88787 0.87151 1.23317 0.97261 1.01069 1.01064 1.22401 0.98820 0.91196 1.03366 0.88346 1.19973 0.95407 0.92769 0.95353 1.22675 0.95533 1.01393 1.03514 1.21831 1.01379 0.99687 0.96478 1.22015 0.99141 0.99898 0.99569 0.94267 0.92620 0.92838 0.96135 0.96449 0.93434 0.90121 0.92832 0.96764 0.89041 0.95406 0.88460 0.89553 0.92105 0.93171 0.90187 0.92890 0.92928 0.92911 0.90847 0.93012 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.50 37.16 0.32 -2.90 16 2 C 0.09 1.77 2.29 -67.72 -0.16 1.62 16 3 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 4 C 0.03 0.70 4.26 -27.89 -0.12 0.58 16 5 C -0.49 -13.70 8.84 -34.44 -0.30 -14.01 16 6 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 N -0.51 -9.76 4.44 -234.90 -1.04 -10.81 16 14 C 0.03 0.46 8.62 60.07 0.52 0.97 16 15 C 0.07 1.05 2.45 -3.82 -0.01 1.04 16 16 C -0.13 -1.81 5.10 -90.61 -0.46 -2.27 16 17 H 0.11 1.71 7.34 -51.93 -0.38 1.33 16 18 C -0.19 -2.21 9.46 -26.69 -0.25 -2.47 16 19 C -0.14 -1.68 5.01 -90.58 -0.45 -2.13 16 20 H 0.10 1.16 8.14 -51.92 -0.42 0.74 16 21 C -0.04 -0.39 0.76 -154.51 -0.12 -0.51 16 22 C -0.17 -1.92 7.31 37.15 0.27 -1.65 16 23 C -0.14 -1.32 8.42 37.16 0.31 -1.00 16 24 C -0.15 -1.82 8.24 37.16 0.31 -1.51 16 25 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 28 H 0.02 0.55 6.17 -51.93 -0.32 0.23 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.69 6.22 -51.93 -0.32 1.37 16 32 H 0.05 0.88 6.74 -51.93 -0.35 0.53 16 33 H 0.01 0.24 6.28 -51.93 -0.33 -0.09 16 34 H 0.09 1.40 2.90 -51.93 -0.15 1.25 16 35 H 0.03 0.42 6.11 -51.93 -0.32 0.10 16 36 H 0.10 1.09 5.60 -51.93 -0.29 0.80 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.64 5.47 -51.93 -0.28 0.36 16 39 H 0.05 0.50 8.06 -51.93 -0.42 0.09 16 40 H 0.08 0.98 3.96 -51.93 -0.21 0.77 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.04 5.49 -51.93 -0.29 0.76 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 334.15 15.07 5.04 5.04 Total: -1.00 -29.25 334.15 -8.64 -37.89 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.10 Total: 0.24 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -0.25 Total: -22.89 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.31 Total: -37.45 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.25 -8.64 -37.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699735643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.563 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds