Wall clock time and date at job start Mon Mar 30 2020 07:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46952 * 2 1 4 4 C 1.52990 * 109.47054 * 239.99909 * 2 1 3 5 5 C 1.50703 * 109.47292 * 174.99877 * 4 2 1 6 6 H 1.08003 * 119.99334 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00384 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00132 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00251 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47048 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47388 * 119.99678 * 9 7 5 12 12 H 1.48502 * 109.47174 * 239.99609 * 9 7 5 13 13 N 1.46896 * 109.47027 * 119.99475 * 2 1 3 14 14 C 1.46909 * 110.99736 * 58.95995 * 13 2 1 15 15 C 1.46903 * 111.00438 * 295.00467 * 13 2 1 16 16 C 1.53000 * 109.46890 * 190.00137 * 15 13 2 17 17 H 1.09002 * 115.55423 * 3.12919 * 16 15 13 18 18 C 1.53008 * 117.49451 * 217.46343 * 16 15 13 19 19 C 1.53004 * 117.49596 * 148.80587 * 16 15 13 20 20 H 1.09007 * 117.49559 * 214.97437 * 19 16 15 21 21 C 1.52995 * 117.49835 * 359.97438 * 19 16 15 22 22 C 1.52992 * 109.47491 * 47.93465 * 21 19 16 23 23 C 1.53007 * 109.47062 * 167.93440 * 21 19 16 24 24 C 1.53006 * 109.46957 * 287.92926 * 21 19 16 25 25 H 1.09003 * 109.47458 * 299.99927 * 1 2 3 26 26 H 1.09000 * 109.47403 * 59.99786 * 1 2 3 27 27 H 1.09002 * 109.47209 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47291 * 294.99667 * 4 2 1 29 29 H 1.09004 * 109.47471 * 55.00030 * 4 2 1 30 30 H 0.96994 * 120.00286 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47233 * 59.99455 * 14 13 2 32 32 H 1.08997 * 109.46839 * 179.97438 * 14 13 2 33 33 H 1.09000 * 109.46735 * 299.99214 * 14 13 2 34 34 H 1.08994 * 109.46605 * 309.99648 * 15 13 2 35 35 H 1.08992 * 109.46818 * 70.00140 * 15 13 2 36 36 H 1.08999 * 117.49730 * 359.97438 * 18 16 15 37 37 H 1.08999 * 117.49580 * 144.99778 * 18 16 15 38 38 H 1.09000 * 109.47151 * 45.37450 * 22 21 19 39 39 H 1.09000 * 109.47523 * 165.38422 * 22 21 19 40 40 H 1.09007 * 109.46796 * 285.37966 * 22 21 19 41 41 H 1.09004 * 109.47098 * 59.99685 * 23 21 19 42 42 H 1.08994 * 109.47081 * 179.97438 * 23 21 19 43 43 H 1.08996 * 109.46809 * 300.00032 * 23 21 19 44 44 H 1.09003 * 109.46865 * 58.15080 * 24 21 19 45 45 H 1.08998 * 109.46674 * 178.14338 * 24 21 19 46 46 H 1.08996 * 109.47478 * 298.14497 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2303 -1.1926 -2.3582 8 7 3.5764 -1.8369 -3.3000 9 14 6.0920 -1.0614 -2.4366 10 1 6.5837 -0.2918 -1.2655 11 1 6.6854 -2.4225 -2.4195 12 1 6.4870 -0.3649 -3.6873 13 7 2.0196 -0.6924 1.1995 14 6 1.5283 -2.0761 1.2460 15 6 1.6486 0.0393 2.4181 16 6 2.3789 -0.5661 3.6186 17 1 3.0729 -1.3743 3.3881 18 6 1.6161 -0.6460 4.9426 19 6 2.7452 0.3730 4.7696 20 1 3.6802 0.1824 5.2966 21 6 2.3538 1.8456 4.6317 22 6 0.8929 1.9458 4.1886 23 6 2.5270 2.5478 5.9801 24 6 3.2503 2.5161 3.5887 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2617 -2.1369 30 1 4.0607 -2.2437 -4.0353 31 1 1.8762 -2.6150 0.3648 32 1 1.9060 -2.5657 2.1436 33 1 0.4385 -2.0742 1.2640 34 1 1.9297 1.0870 2.3125 35 1 0.5722 -0.0345 2.5726 36 1 0.5942 -0.2669 4.9583 37 1 1.8084 -1.5068 5.5830 38 1 0.2864 1.2585 4.7785 39 1 0.5368 2.9650 4.3383 40 1 0.8147 1.6850 3.1331 41 1 3.5679 2.4765 6.2958 42 1 2.2486 3.5970 5.8817 43 1 1.8884 2.0701 6.7231 44 1 3.1517 1.9953 2.6362 45 1 2.9499 3.5567 3.4666 46 1 4.2878 2.4739 3.9203 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699735643.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:28 Heat of formation + Delta-G solvation = 12.862482 kcal Electronic energy + Delta-G solvation = -20230.408662 eV Core-core repulsion = 17541.466550 eV Total energy + Delta-G solvation = -2688.942113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92522 -38.76844 -35.17144 -34.58383 -32.22172 -29.44575 -29.02495 -28.20196 -27.48858 -25.85816 -24.64158 -23.66844 -21.22755 -20.33064 -19.16174 -18.34956 -17.34297 -16.60479 -16.32974 -15.93021 -15.54253 -15.15982 -14.81558 -14.55462 -14.27603 -14.06176 -13.68875 -13.35328 -13.20561 -13.12087 -12.93379 -12.85386 -12.66175 -12.55365 -12.38537 -12.32809 -12.20386 -12.09539 -11.79773 -11.70838 -11.41984 -11.37502 -11.06201 -11.04917 -10.66451 -10.46797 -10.27359 -8.83019 -8.09044 -6.13445 1.40798 1.41973 1.55183 2.48036 2.94193 3.15543 3.29379 3.74911 3.96386 4.03235 4.08272 4.23507 4.31378 4.34627 4.41772 4.53186 4.55762 4.63294 4.67337 4.71152 4.78663 4.82828 4.89861 4.91626 4.95861 5.01321 5.04930 5.13118 5.16236 5.18513 5.22171 5.23750 5.27668 5.34614 5.42424 5.51035 5.51831 5.59717 5.64676 5.74302 5.91975 6.35914 6.49853 6.61557 7.00785 7.52418 9.03219 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022933 B = 0.005695 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.634240 B = 4915.776372 C = 5394.876168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.496 4.496 6 H 0.056 0.944 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.535 5.535 14 C 0.034 3.966 15 C 0.078 3.922 16 C -0.152 4.152 17 H 0.091 0.909 18 C -0.170 4.170 19 C -0.134 4.134 20 H 0.101 0.899 21 C -0.034 4.034 22 C -0.173 4.173 23 C -0.133 4.133 24 C -0.149 4.149 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.051 0.949 28 H -0.001 1.001 29 H -0.009 1.009 30 H 0.258 0.742 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.093 0.907 35 H 0.038 0.962 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 6.649 18.677 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.535 4.535 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.259 5.259 14 C -0.115 4.115 15 C -0.049 4.049 16 C -0.171 4.171 17 H 0.109 0.891 18 C -0.207 4.207 19 C -0.152 4.152 20 H 0.119 0.881 21 C -0.034 4.034 22 C -0.230 4.230 23 C -0.190 4.190 24 C -0.206 4.206 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.017 0.983 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.110 0.890 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.860 6.553 18.509 20.227 hybrid contribution 0.218 -0.380 -0.686 0.814 sum -4.642 6.173 17.823 19.424 Atomic orbital electron populations 1.22394 0.97411 1.01617 1.01938 1.21591 0.91913 0.97139 0.90683 0.92039 1.19093 0.95223 0.94539 0.91506 1.21509 0.93271 1.32172 1.06511 0.92555 1.25827 1.02734 0.95713 0.95761 1.70098 1.36941 1.38150 1.13095 0.85551 0.80862 0.77638 0.77895 1.19056 1.20947 1.20748 1.62020 1.59958 1.02201 1.01677 1.22262 0.97163 0.90563 1.01464 1.22351 0.96285 0.98225 0.88019 1.22240 1.03276 1.02181 0.89358 0.89126 1.23373 0.97485 1.01089 0.98760 1.22485 0.99339 0.91721 1.01657 0.88093 1.19988 0.95305 0.92177 0.95960 1.22639 0.95423 1.02286 1.02634 1.21791 1.01773 1.00003 0.95435 1.21998 0.99531 1.00316 0.98710 0.91561 0.92492 0.93044 0.98260 0.99120 0.93318 0.93785 0.91156 0.95354 0.88984 0.94448 0.87467 0.88398 0.91323 0.92132 0.91588 0.92691 0.92147 0.92140 0.93270 0.92037 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 8.50 71.98 0.61 -5.31 16 2 C 0.10 3.93 2.29 44.91 0.10 4.03 16 3 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 4 C 0.03 1.77 4.26 29.85 0.13 1.90 16 5 C -0.50 -28.59 8.84 25.60 0.23 -28.37 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.32 13.29 21.44 0.28 -58.03 16 9 Si 0.95 46.16 29.54 68.60 2.03 48.19 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.54 -20.35 4.44 -897.08 -3.99 -24.33 16 14 C 0.03 1.23 8.62 127.69 1.10 2.33 16 15 C 0.08 2.30 2.45 86.30 0.21 2.51 16 16 C -0.15 -4.04 5.10 -10.79 -0.06 -4.09 16 17 H 0.09 2.78 7.34 -2.39 -0.02 2.76 16 18 C -0.17 -3.48 9.46 30.62 0.29 -3.19 16 19 C -0.13 -2.93 5.01 -10.77 -0.05 -2.98 16 20 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 21 C -0.03 -0.68 0.76 -52.18 -0.04 -0.72 16 22 C -0.17 -3.33 7.31 71.98 0.53 -2.81 16 23 C -0.13 -2.16 8.42 71.98 0.61 -1.55 16 24 C -0.15 -3.41 8.24 71.98 0.59 -2.81 16 25 H 0.07 1.89 6.75 -2.39 -0.02 1.87 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.75 6.38 -2.39 -0.02 1.74 16 28 H 0.00 -0.05 6.17 -2.39 -0.01 -0.06 16 29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.04 1.91 6.22 -2.39 -0.01 1.90 16 32 H 0.07 2.29 6.74 -2.39 -0.02 2.27 16 33 H 0.03 0.94 6.28 -2.39 -0.01 0.92 16 34 H 0.09 2.74 2.90 -2.39 -0.01 2.73 16 35 H 0.04 1.04 6.11 -2.39 -0.01 1.02 16 36 H 0.11 2.00 5.60 -2.39 -0.01 1.99 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 1.21 5.47 -2.39 -0.01 1.19 16 39 H 0.06 1.04 8.06 -2.39 -0.02 1.02 16 40 H 0.07 1.46 3.96 -2.38 -0.01 1.45 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 1.37 5.49 -2.39 -0.01 1.36 16 45 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -63.51 334.15 3.97 -59.54 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.93 Total: 15.51 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 4.71 Total: -40.88 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.70 Total: -82.37 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -63.51 3.97 -59.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699735643.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.406 kcal (2) G-P(sol) polarization free energy of solvation -63.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds