Wall clock time and date at job start Mon Mar 30 2020 07:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47342 * 2 1 4 4 C 1.53004 * 109.46711 * 240.00131 * 2 1 3 5 5 C 1.50700 * 109.47091 * 175.00557 * 4 2 1 6 6 H 1.07999 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99922 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00135 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46997 * 60.00091 * 9 7 5 11 11 H 1.48499 * 109.46998 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47361 * 299.99981 * 9 7 5 13 13 N 1.46897 * 109.47342 * 120.00437 * 2 1 3 14 14 C 1.46907 * 111.00170 * 58.94684 * 13 2 1 15 15 C 1.46904 * 110.99890 * 294.99669 * 13 2 1 16 16 C 1.53003 * 109.47341 * 189.99987 * 15 13 2 17 17 H 1.09003 * 115.54823 * 332.83596 * 16 15 13 18 18 C 1.52992 * 117.50025 * 118.54007 * 16 15 13 19 19 C 1.52990 * 60.00133 * 107.48985 * 18 16 15 20 20 H 1.09005 * 117.52212 * 107.48266 * 19 18 16 21 21 C 1.53004 * 117.50049 * 252.51077 * 19 18 16 22 22 C 1.53001 * 109.46964 * 136.29136 * 21 19 18 23 23 C 1.52998 * 109.47284 * 256.28884 * 21 19 18 24 24 C 1.52995 * 109.46953 * 16.29264 * 21 19 18 25 25 H 1.08998 * 109.47147 * 59.99188 * 1 2 3 26 26 H 1.09006 * 109.46485 * 300.00261 * 1 2 3 27 27 H 1.08993 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47228 * 295.00058 * 4 2 1 29 29 H 1.08997 * 109.47557 * 54.99813 * 4 2 1 30 30 H 0.96998 * 119.99536 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46803 * 60.00328 * 14 13 2 32 32 H 1.08997 * 109.46650 * 180.02562 * 14 13 2 33 33 H 1.08997 * 109.46641 * 300.00280 * 14 13 2 34 34 H 1.09001 * 109.46797 * 310.00092 * 15 13 2 35 35 H 1.08996 * 109.47077 * 69.99779 * 15 13 2 36 36 H 1.09002 * 117.50062 * 214.98203 * 18 16 15 37 37 H 1.09009 * 117.50050 * 359.97438 * 18 16 15 38 38 H 1.08992 * 109.47503 * 45.14424 * 22 21 19 39 39 H 1.09003 * 109.46825 * 165.14832 * 22 21 19 40 40 H 1.09001 * 109.47100 * 285.14535 * 22 21 19 41 41 H 1.09004 * 109.46964 * 59.99723 * 23 21 19 42 42 H 1.08997 * 109.47427 * 180.02562 * 23 21 19 43 43 H 1.09000 * 109.47139 * 300.00293 * 23 21 19 44 44 H 1.08999 * 109.47613 * 80.98395 * 24 21 19 45 45 H 1.09000 * 109.46873 * 200.98919 * 24 21 19 46 46 H 1.09005 * 109.47311 * 320.97867 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5418 -0.6151 -1.3128 6 1 4.0789 -0.0857 -0.5397 7 6 4.2302 -1.1928 -2.3585 8 7 3.5761 -1.8370 -3.3002 9 14 6.0918 -1.0606 -2.4376 10 1 6.6843 -1.6869 -1.2284 11 1 6.5867 -1.7607 -3.6500 12 1 6.4844 0.3703 -2.4967 13 7 2.0197 -0.6926 1.1993 14 6 1.5282 -2.0762 1.2459 15 6 1.6488 0.0391 2.4180 16 6 2.3790 -0.5664 3.6186 17 1 2.6429 -1.6199 3.5259 18 6 3.3423 0.3384 4.3893 19 6 1.9993 -0.0528 5.0088 20 1 2.0132 -0.7685 5.8309 21 6 0.9184 1.0269 5.0923 22 6 -0.4271 0.4354 4.6674 23 6 0.8190 1.5390 6.5306 24 6 1.2825 2.1859 4.1622 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.7515 -1.7716 -1.2057 29 1 1.6053 -0.2618 -2.1370 30 1 4.0604 -2.2431 -4.0360 31 1 1.8761 -2.6151 0.3647 32 1 1.9053 -2.5656 2.1439 33 1 0.4384 -2.0742 1.2639 34 1 1.9299 1.0869 2.3124 35 1 0.5724 -0.0345 2.5726 36 1 4.2404 -0.1197 4.8038 37 1 3.4563 1.3650 4.0408 38 1 -0.5641 -0.5353 5.1439 39 1 -1.2310 1.1060 4.9712 40 1 -0.4450 0.3141 3.5843 41 1 1.7776 1.9603 6.8333 42 1 0.0487 2.3078 6.5901 43 1 0.5596 0.7132 7.1931 44 1 0.9970 1.9354 3.1405 45 1 0.7529 3.0849 4.4776 46 1 2.3571 2.3632 4.2061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699735648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:37 Heat of formation + Delta-G solvation = 13.478670 kcal Electronic energy + Delta-G solvation = -20176.631524 eV Core-core repulsion = 17487.716132 eV Total energy + Delta-G solvation = -2688.915393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88636 -38.77495 -35.16154 -34.58425 -32.22950 -29.40241 -28.93554 -28.28221 -27.56032 -25.88680 -24.65214 -23.68008 -21.18952 -20.29501 -19.17107 -18.34319 -17.35992 -16.61559 -16.37080 -15.82517 -15.57303 -15.19023 -14.88577 -14.58498 -14.26165 -14.02090 -13.61434 -13.45010 -13.34796 -13.09726 -12.91478 -12.87487 -12.78533 -12.56405 -12.34703 -12.31015 -12.20587 -11.98973 -11.76874 -11.68651 -11.40018 -11.18871 -11.10059 -11.03023 -10.67083 -10.46256 -10.40875 -8.76999 -8.08577 -6.13189 1.41981 1.44834 1.52298 2.48452 2.87941 3.21880 3.34728 3.72207 3.92839 4.00733 4.12760 4.24474 4.28456 4.34187 4.40262 4.53272 4.54833 4.57266 4.66123 4.71721 4.81362 4.83998 4.85892 4.94117 4.94737 4.98975 5.05729 5.15467 5.17022 5.19951 5.22809 5.23866 5.31726 5.33380 5.40917 5.51027 5.54068 5.60981 5.62945 5.74315 5.91929 6.36131 6.50253 6.61521 7.00532 7.52523 9.03272 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.028341 B = 0.005262 C = 0.004821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.737045 B = 5319.629641 C = 5806.035433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.499 4.499 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.536 5.536 14 C 0.032 3.968 15 C 0.075 3.925 16 C -0.149 4.149 17 H 0.093 0.907 18 C -0.183 4.183 19 C -0.125 4.125 20 H 0.108 0.892 21 C -0.035 4.035 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.171 4.171 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.051 0.949 28 H -0.001 1.001 29 H -0.010 1.010 30 H 0.258 0.742 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 5.756 19.129 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.259 5.259 14 C -0.116 4.116 15 C -0.051 4.051 16 C -0.168 4.168 17 H 0.111 0.889 18 C -0.219 4.219 19 C -0.143 4.143 20 H 0.126 0.874 21 C -0.035 4.035 22 C -0.204 4.204 23 C -0.191 4.191 24 C -0.227 4.227 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.017 0.983 29 H 0.008 0.992 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.364 5.656 18.953 20.777 hybrid contribution 0.243 -0.342 -0.662 0.783 sum -6.121 5.314 18.291 20.007 Atomic orbital electron populations 1.22390 0.97389 1.01617 1.01929 1.21592 0.91924 0.97107 0.90677 0.92088 1.19084 0.95190 0.94523 0.91501 1.21455 0.93300 1.32408 1.06601 0.92587 1.25833 1.02781 0.95649 0.95717 1.70087 1.37112 1.38048 1.13014 0.85650 0.80721 0.78377 0.77129 1.19871 1.21255 1.19492 1.61972 1.60074 1.02180 1.01678 1.22288 0.97182 0.90631 1.01495 1.22358 0.97626 0.97352 0.87800 1.22249 1.03701 0.98870 0.91972 0.88867 1.23352 0.93704 1.00711 1.04149 1.22527 0.95834 1.00660 0.95288 0.87406 1.20000 0.93678 0.93517 0.96281 1.22084 0.96085 1.00890 1.01327 1.21818 1.01835 1.00995 0.94424 1.22613 1.02243 0.98027 0.99866 0.92513 0.91561 0.93018 0.98278 0.99156 0.93297 0.93756 0.91107 0.95296 0.90425 0.92814 0.89078 0.87967 0.92578 0.91921 0.92728 0.92613 0.92047 0.92305 0.92055 0.92034 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.90 8.50 71.98 0.61 -5.29 16 2 C 0.10 3.95 2.29 44.92 0.10 4.05 16 3 H 0.06 2.58 8.03 -2.39 -0.02 2.56 16 4 C 0.03 1.81 4.26 29.85 0.13 1.93 16 5 C -0.50 -28.84 8.84 25.60 0.23 -28.62 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 9 Si 0.96 46.16 29.54 68.60 2.03 48.19 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.54 -20.40 4.47 -897.04 -4.01 -24.41 16 14 C 0.03 1.17 8.65 127.69 1.10 2.28 16 15 C 0.07 2.22 2.62 86.30 0.23 2.44 16 16 C -0.15 -3.98 5.60 -10.80 -0.06 -4.04 16 17 H 0.09 2.71 6.38 -2.39 -0.02 2.69 16 18 C -0.18 -4.32 9.41 30.59 0.29 -4.03 16 19 C -0.12 -2.58 4.99 -10.80 -0.05 -2.64 16 20 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 21 C -0.03 -0.63 0.76 -52.18 -0.04 -0.67 16 22 C -0.15 -2.68 8.30 71.98 0.60 -2.08 16 23 C -0.13 -2.00 8.32 71.98 0.60 -1.40 16 24 C -0.17 -3.35 7.23 71.98 0.52 -2.83 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 1.88 6.75 -2.38 -0.02 1.86 16 27 H 0.05 1.76 6.38 -2.39 -0.02 1.74 16 28 H 0.00 -0.06 6.17 -2.38 -0.01 -0.07 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.04 1.93 6.22 -2.39 -0.01 1.91 16 32 H 0.07 2.29 6.23 -2.39 -0.01 2.27 16 33 H 0.03 0.95 6.28 -2.39 -0.02 0.94 16 34 H 0.08 2.32 5.14 -2.39 -0.01 2.31 16 35 H 0.05 1.47 3.48 -2.39 -0.01 1.46 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 2.42 5.34 -2.38 -0.01 2.41 16 38 H 0.06 0.99 8.06 -2.39 -0.02 0.97 16 39 H 0.06 0.99 8.06 -2.39 -0.02 0.97 16 40 H 0.05 1.13 4.72 -2.39 -0.01 1.12 16 41 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.06 0.82 8.13 -2.39 -0.02 0.81 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.35 4.49 -2.39 -0.01 1.34 16 45 H 0.06 1.05 7.96 -2.39 -0.02 1.03 16 46 H 0.06 1.31 5.15 -2.38 -0.01 1.29 16 Total: -1.00 -63.63 331.72 3.96 -59.67 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.94 Total: 15.34 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 4.71 Total: -40.67 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.72 Total: -82.53 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -63.63 3.96 -59.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699735648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.146 kcal (2) G-P(sol) polarization free energy of solvation -63.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds