Wall clock time and date at job start Mon Mar 30 2020 07:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46846 * 2 1 4 4 C 1.52998 * 109.46882 * 240.00246 * 2 1 3 5 5 C 1.50704 * 109.47058 * 174.99779 * 4 2 1 6 6 H 1.08003 * 119.99852 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00220 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00032 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46816 * 89.99769 * 9 7 5 11 11 H 1.48493 * 109.47390 * 209.99694 * 9 7 5 12 12 H 1.48502 * 109.47084 * 330.00391 * 9 7 5 13 13 N 1.46893 * 109.47293 * 120.00321 * 2 1 3 14 14 C 1.46895 * 111.00448 * 58.95548 * 13 2 1 15 15 C 1.46903 * 110.99898 * 294.99923 * 13 2 1 16 16 C 1.53005 * 109.47175 * 190.00437 * 15 13 2 17 17 H 1.09001 * 115.54634 * 330.66864 * 16 15 13 18 18 C 1.52990 * 117.50306 * 116.37800 * 16 15 13 19 19 C 1.52998 * 60.00224 * 107.48706 * 18 16 15 20 20 H 1.08996 * 117.52106 * 252.51904 * 19 18 16 21 21 C 1.52997 * 117.49789 * 107.48781 * 19 18 16 22 22 C 1.53006 * 109.47127 * 351.38362 * 21 19 18 23 23 C 1.52997 * 109.47232 * 231.38240 * 21 19 18 24 24 C 1.52999 * 109.47317 * 111.37872 * 21 19 18 25 25 H 1.08998 * 109.47315 * 59.99730 * 1 2 3 26 26 H 1.09006 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47134 * 299.99358 * 1 2 3 28 28 H 1.08998 * 109.47575 * 294.99752 * 4 2 1 29 29 H 1.09006 * 109.47486 * 55.00200 * 4 2 1 30 30 H 0.97001 * 119.99925 * 180.02562 * 8 7 5 31 31 H 1.09010 * 109.47043 * 296.04868 * 14 13 2 32 32 H 1.09000 * 109.47056 * 56.04084 * 14 13 2 33 33 H 1.08997 * 109.47661 * 176.05012 * 14 13 2 34 34 H 1.09001 * 109.46998 * 70.00205 * 15 13 2 35 35 H 1.09001 * 109.47013 * 309.99941 * 15 13 2 36 36 H 1.09010 * 117.49583 * 0.02562 * 18 16 15 37 37 H 1.09001 * 117.50198 * 214.98164 * 18 16 15 38 38 H 1.09001 * 109.47002 * 299.99574 * 22 21 19 39 39 H 1.08993 * 109.46955 * 60.00011 * 22 21 19 40 40 H 1.09000 * 109.47050 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.47140 * 180.02562 * 23 21 19 42 42 H 1.09001 * 109.47230 * 299.99295 * 23 21 19 43 43 H 1.09001 * 109.47375 * 60.00133 * 23 21 19 44 44 H 1.09001 * 109.47362 * 300.00732 * 24 21 19 45 45 H 1.09002 * 109.46716 * 60.00091 * 24 21 19 46 46 H 1.09000 * 109.47486 * 180.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2302 -1.1925 -2.3584 8 7 3.5763 -1.8367 -3.3001 9 14 6.0919 -1.0600 -2.4376 10 1 6.7008 -2.2127 -1.7262 11 1 6.5288 -1.0674 -3.8568 12 1 6.5260 0.2051 -1.7925 13 7 2.0197 -0.6925 1.1993 14 6 1.5284 -2.0761 1.2459 15 6 1.6487 0.0391 2.4180 16 6 2.3790 -0.5663 3.6185 17 1 2.6103 -1.6286 3.5412 18 6 3.3801 0.3231 4.3584 19 6 2.0357 -0.0170 5.0046 20 1 1.2894 0.7753 5.0614 21 6 2.0439 -1.0010 6.1763 22 6 3.4388 -1.6134 6.3182 23 6 1.0234 -2.1111 5.9171 24 6 1.6778 -0.2623 7.4652 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7516 -1.7715 -1.2057 29 1 1.6053 -0.2616 -2.1370 30 1 4.0607 -2.2435 -4.0356 31 1 0.4420 -2.0732 1.3346 32 1 1.8168 -2.5950 0.3317 33 1 1.9618 -2.5869 2.1057 34 1 0.5722 -0.0346 2.5726 35 1 1.9298 1.0869 2.3124 36 1 3.5182 1.3398 3.9902 37 1 4.2705 -0.1540 4.7679 38 1 3.6997 -2.1397 5.4000 39 1 4.1657 -0.8226 6.5028 40 1 3.4447 -2.3141 7.1532 41 1 1.0289 -2.8118 6.7521 42 1 0.0296 -1.6748 5.8162 43 1 1.2843 -2.6373 4.9989 44 1 2.4047 0.5286 7.6497 45 1 0.6840 0.1740 7.3641 46 1 1.6840 -0.9632 8.2999 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699735650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:41 Heat of formation + Delta-G solvation = -8.548872 kcal Electronic energy + Delta-G solvation = -19717.446353 eV Core-core repulsion = 17027.575775 eV Total energy + Delta-G solvation = -2689.870579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43155 -38.95512 -35.43077 -34.59228 -32.15084 -29.30391 -28.51405 -28.07421 -27.94619 -25.90975 -24.65905 -23.67544 -21.24112 -20.31618 -19.20396 -18.35388 -17.21497 -16.66298 -16.43872 -15.66166 -15.54188 -14.98553 -14.78181 -14.61321 -14.34583 -14.03140 -13.79213 -13.51875 -13.16527 -13.08031 -12.92783 -12.89253 -12.65921 -12.52425 -12.49395 -12.36972 -12.26336 -12.07635 -11.92422 -11.77512 -11.61812 -11.37439 -11.10239 -11.04641 -10.69684 -10.47317 -10.43676 -8.85796 -8.09346 -6.14002 1.41885 1.42878 1.53828 2.48004 2.85758 3.20326 3.31215 3.76177 3.94932 3.98818 4.15890 4.20513 4.31045 4.33306 4.41750 4.52115 4.55334 4.57299 4.69073 4.73174 4.80447 4.82562 4.84670 4.89910 4.96477 4.97966 5.00309 5.10408 5.14521 5.17909 5.21263 5.22879 5.28291 5.29185 5.43841 5.45022 5.50731 5.53493 5.61252 5.72952 5.91229 6.34462 6.46955 6.57373 6.99858 7.51873 9.02741 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.024514 B = 0.004916 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.921800 B = 5694.483024 C = 6303.620659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.499 4.499 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.532 5.532 14 C 0.034 3.966 15 C 0.090 3.910 16 C -0.144 4.144 17 H 0.096 0.904 18 C -0.178 4.178 19 C -0.125 4.125 20 H 0.104 0.896 21 C -0.038 4.038 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.134 4.134 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.000 1.000 29 H -0.009 1.009 30 H 0.259 0.741 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 2.430 20.881 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.256 5.256 14 C -0.114 4.114 15 C -0.037 4.037 16 C -0.163 4.163 17 H 0.114 0.886 18 C -0.214 4.214 19 C -0.143 4.143 20 H 0.122 0.878 21 C -0.038 4.038 22 C -0.201 4.201 23 C -0.195 4.195 24 C -0.192 4.192 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.019 0.981 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.502 2.335 20.703 21.315 hybrid contribution 0.106 -0.137 -0.799 0.818 sum -4.396 2.199 19.903 20.501 Atomic orbital electron populations 1.22382 0.97320 1.01618 1.01919 1.21619 0.91981 0.97164 0.90686 0.92068 1.19099 0.95235 0.94559 0.91448 1.21484 0.93274 1.32383 1.06602 0.92580 1.25832 1.02811 0.95655 0.95685 1.70091 1.37049 1.38061 1.13070 0.85586 0.80733 0.78640 0.76876 1.20371 1.21125 1.19146 1.61946 1.59959 1.02247 1.01415 1.22281 0.97150 0.90401 1.01594 1.21650 0.96710 0.97010 0.88361 1.22242 1.03510 0.98912 0.91597 0.88567 1.23276 0.94031 1.00316 1.03808 1.22502 0.98683 1.00902 0.92226 0.87771 1.20073 0.95696 0.94248 0.93777 1.21992 0.96114 1.00657 1.01363 1.21829 0.98581 0.97802 1.01300 1.21807 1.01447 1.00122 0.95788 0.92498 0.93032 0.91616 0.98141 0.99093 0.93273 0.95265 0.93511 0.91188 0.94445 0.91742 0.89432 0.88178 0.93687 0.92111 0.91925 0.91931 0.92609 0.93671 0.92518 0.92402 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.94 8.50 71.98 0.61 -5.33 16 2 C 0.09 3.91 2.29 44.92 0.10 4.01 16 3 H 0.06 2.61 8.03 -2.38 -0.02 2.59 16 4 C 0.03 1.79 4.27 29.85 0.13 1.91 16 5 C -0.50 -28.85 8.84 25.60 0.23 -28.63 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.36 13.29 21.45 0.28 -58.07 16 9 Si 0.96 46.16 29.54 68.60 2.03 48.18 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 N -0.53 -20.40 4.46 -897.05 -4.01 -24.41 16 14 C 0.03 1.23 8.57 127.69 1.09 2.32 16 15 C 0.09 2.73 4.68 86.30 0.40 3.14 16 16 C -0.14 -3.82 4.54 -10.80 -0.05 -3.87 16 17 H 0.10 2.77 5.31 -2.39 -0.01 2.76 16 18 C -0.18 -4.23 9.21 30.59 0.28 -3.95 16 19 C -0.12 -2.59 4.87 -10.80 -0.05 -2.64 16 20 H 0.10 2.06 8.11 -2.39 -0.02 2.04 16 21 C -0.04 -0.67 0.88 -52.18 -0.05 -0.71 16 22 C -0.14 -2.58 7.07 71.98 0.51 -2.07 16 23 C -0.14 -2.45 8.31 71.98 0.60 -1.85 16 24 C -0.13 -1.95 8.46 71.98 0.61 -1.34 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.76 6.47 -2.38 -0.02 1.75 16 27 H 0.06 1.90 6.75 -2.39 -0.02 1.89 16 28 H 0.00 0.02 6.09 -2.39 -0.01 0.01 16 29 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.03 0.96 6.51 -2.38 -0.02 0.94 16 32 H 0.05 2.02 6.03 -2.39 -0.01 2.01 16 33 H 0.07 2.28 6.33 -2.39 -0.02 2.26 16 34 H 0.04 1.06 6.94 -2.39 -0.02 1.04 16 35 H 0.06 1.96 7.73 -2.39 -0.02 1.94 16 36 H 0.09 2.11 8.03 -2.38 -0.02 2.10 16 37 H 0.10 2.29 5.85 -2.39 -0.01 2.28 16 38 H 0.04 0.93 7.07 -2.39 -0.02 0.91 16 39 H 0.06 1.05 6.98 -2.39 -0.02 1.03 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.04 0.92 7.29 -2.39 -0.02 0.90 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -63.46 345.27 4.10 -59.36 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.91 Total: 13.69 kcal Atomic # 6 Polarization: -43.64 SS G_CDS: 4.88 Total: -38.76 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.72 Total: -82.48 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -63.46 4.10 -59.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699735650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.812 kcal (2) G-P(sol) polarization free energy of solvation -63.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds