Wall clock time and date at job start Mon Mar 30 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46964 * 2 1 4 4 H 1.08998 * 109.46442 * 58.21216 * 3 2 1 5 5 C 1.50694 * 109.46926 * 178.21070 * 3 2 1 6 6 H 1.08006 * 120.00234 * 120.00513 * 5 3 2 7 7 C 1.37886 * 119.99863 * 299.99946 * 5 3 2 8 8 N 1.31516 * 119.99470 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00108 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46758 * 89.99923 * 9 7 5 11 11 H 1.48495 * 109.46833 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.47116 * 330.00102 * 9 7 5 13 13 N 1.46900 * 109.47163 * 298.21050 * 3 2 1 14 14 C 1.47628 * 110.99991 * 296.43954 * 13 3 2 15 15 C 1.50811 * 108.05435 * 150.35126 * 14 13 3 16 16 C 1.53823 * 111.62614 * 95.05256 * 15 14 13 17 17 C 1.54166 * 111.96848 * 319.04536 * 16 15 14 18 18 C 1.50751 * 112.61105 * 318.48461 * 17 16 15 19 19 H 1.08995 * 109.54434 * 333.15804 * 18 17 16 20 20 C 1.53002 * 109.54688 * 212.88346 * 18 17 16 21 21 C 1.52994 * 109.46905 * 61.42035 * 20 18 17 22 22 C 1.52996 * 109.46905 * 181.41701 * 20 18 17 23 23 C 1.39773 * 110.99940 * 167.54668 * 13 3 2 24 24 H 1.09004 * 109.47395 * 60.00084 * 1 2 3 25 25 H 1.09006 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47264 * 299.99694 * 1 2 3 27 27 H 1.08994 * 109.47364 * 119.99903 * 2 1 3 28 28 H 1.09006 * 109.46994 * 240.00757 * 2 1 3 29 29 H 0.97000 * 119.99959 * 180.02562 * 8 7 5 30 30 H 1.09009 * 109.74539 * 269.98594 * 14 13 3 31 31 H 1.08995 * 109.75046 * 30.70496 * 14 13 3 32 32 H 1.09007 * 109.04910 * 334.50039 * 15 14 13 33 33 H 1.09004 * 109.04981 * 215.60794 * 15 14 13 34 34 H 1.09001 * 108.98067 * 198.40155 * 16 15 14 35 35 H 1.09002 * 108.91423 * 79.64103 * 16 15 14 36 36 H 1.09003 * 108.85462 * 197.67966 * 17 16 15 37 37 H 1.08992 * 108.77347 * 79.23833 * 17 16 15 38 38 H 1.08998 * 109.47129 * 301.41951 * 20 18 17 39 39 H 1.09003 * 109.47738 * 53.16767 * 21 20 18 40 40 H 1.09007 * 109.47191 * 173.16789 * 21 20 18 41 41 H 1.09008 * 109.47238 * 293.16558 * 21 20 18 42 42 H 1.09001 * 109.47045 * 60.00414 * 22 20 18 43 43 H 1.09004 * 109.46686 * 179.97438 * 22 20 18 44 44 H 1.08998 * 109.47431 * 300.00065 * 22 20 18 45 45 H 1.09001 * 109.02087 * 309.72001 * 23 13 3 46 46 H 1.09006 * 109.02061 * 68.61095 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6506 1.9654 0.8735 5 6 3.5463 1.4428 0.0444 6 1 4.1100 1.9022 -0.7542 7 6 4.2048 0.8566 1.1045 8 7 5.5194 0.8573 1.1434 9 14 3.2299 0.0616 2.4854 10 1 2.9925 -1.3685 2.1639 11 1 3.9952 0.1635 3.7539 12 1 1.9269 0.7580 2.6360 13 7 1.5859 2.1225 -1.2205 14 6 2.1637 1.4916 -2.4236 15 6 1.1905 1.6756 -3.5609 16 6 1.5348 2.9133 -4.4070 17 6 1.9652 4.1079 -3.5329 18 6 1.1152 4.2578 -2.2969 19 1 0.1263 3.8382 -2.4815 20 6 0.9861 5.7402 -1.9410 21 6 0.2986 6.4822 -3.0888 22 6 0.1526 5.8880 -0.6666 23 6 1.7870 3.5026 -1.1293 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 5.9828 0.4446 1.8890 30 1 3.1124 1.9686 -2.6700 31 1 2.3215 0.4285 -2.2423 32 1 0.1857 1.7910 -3.1543 33 1 1.2159 0.7911 -4.1975 34 1 0.6596 3.1982 -4.9909 35 1 2.3479 2.6609 -5.0877 36 1 1.8920 5.0211 -4.1236 37 1 3.0030 3.9662 -3.2316 38 1 1.9777 6.1623 -1.7777 39 1 -0.6400 5.9846 -3.3328 40 1 0.0972 7.5104 -2.7879 41 1 0.9488 6.4805 -3.9638 42 1 0.6424 5.3593 0.1512 43 1 0.0611 6.9441 -0.4128 44 1 -0.8390 5.4658 -0.8299 45 1 1.3704 3.8609 -0.1880 46 1 2.8576 3.7074 -1.1444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703264514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:22 Heat of formation + Delta-G solvation = -14.297071 kcal Electronic energy + Delta-G solvation = -20896.628222 eV Core-core repulsion = 18206.508382 eV Total energy + Delta-G solvation = -2690.119839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.42249 -36.42378 -34.26821 -32.30495 -31.70009 -29.98981 -27.71413 -27.01074 -25.12912 -24.15617 -22.62161 -21.17402 -19.88553 -19.46298 -18.54941 -16.64399 -15.87788 -14.96451 -14.69503 -14.30651 -14.00816 -13.95687 -13.65156 -13.22757 -13.00767 -12.58138 -12.20528 -12.03324 -11.96765 -11.85765 -11.59536 -11.38107 -11.25806 -11.17042 -10.96090 -10.85221 -10.66296 -10.43752 -10.07558 -10.03066 -9.85534 -9.73156 -9.61293 -9.48073 -9.39335 -9.09555 -8.54150 -6.99168 -6.09598 -4.09406 3.26933 3.37819 3.39941 4.39250 4.78246 5.03250 5.15433 5.17745 5.23799 5.34965 5.49006 5.53269 5.70780 5.76301 5.86250 5.89262 5.97695 6.00067 6.04748 6.06599 6.15300 6.20124 6.24489 6.27892 6.28791 6.33677 6.36725 6.47982 6.55751 6.63289 6.66354 6.68987 6.71350 6.81733 6.89995 6.96250 7.01149 7.06504 7.17289 7.34572 7.63168 8.23021 8.45455 8.59811 8.94196 9.54676 11.03551 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.007252 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.383562 B = 3860.110847 C = 4083.233318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.187 3.813 4 H 0.035 0.965 5 C -0.540 4.540 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.541 5.541 14 C 0.074 3.926 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.079 4.079 19 H 0.074 0.926 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.148 4.148 23 C 0.085 3.915 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 6.072 -7.519 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.080 3.920 4 H 0.052 0.948 5 C -0.579 4.579 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.264 5.264 14 C -0.053 4.053 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.098 4.098 19 H 0.093 0.907 20 C -0.109 4.109 21 C -0.202 4.202 22 C -0.205 4.205 23 C -0.045 4.045 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.919 5.979 -7.459 14.512 hybrid contribution 0.642 -0.421 0.886 1.173 sum -10.276 5.558 -6.573 13.405 Atomic orbital electron populations 1.21710 0.97383 0.99156 1.01637 1.21956 0.94071 0.99473 1.00420 1.19683 0.93931 0.90263 0.88170 0.94765 1.21655 0.90356 1.37712 1.08159 0.90789 1.24990 0.94659 0.95513 0.97813 1.69920 1.07201 1.44864 1.31758 0.86859 0.80169 0.79953 0.81278 1.20587 1.22695 1.18941 1.59167 1.60849 1.02996 1.03403 1.21575 0.94823 0.99783 0.89099 1.21490 1.01092 0.96189 0.96755 1.21868 0.99987 0.95486 0.97653 1.21544 1.00163 0.97458 0.96424 1.21115 0.99957 0.93660 0.95105 0.90744 1.21086 0.99156 0.95678 0.94968 1.21883 1.00436 0.99486 0.98395 1.21901 1.00043 1.00666 0.97886 1.20887 0.97923 0.88721 0.96929 0.91833 0.95001 0.94119 0.93793 0.92185 0.92746 0.94559 0.90844 0.91274 0.93167 0.93203 0.93066 0.92541 0.92379 0.91569 0.92916 0.93292 0.92706 0.91852 0.93504 0.92892 0.91835 0.95808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.77 37.16 0.36 -2.20 16 2 C -0.12 -2.62 4.78 -26.73 -0.13 -2.74 16 3 C 0.19 4.30 1.28 -68.86 -0.09 4.21 16 4 H 0.03 0.84 6.84 -51.93 -0.36 0.48 16 5 C -0.54 -14.72 7.90 -34.44 -0.27 -14.99 16 6 H 0.07 2.22 6.77 -52.48 -0.36 1.86 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 9 Si 0.89 21.96 24.39 -169.99 -4.15 17.82 16 10 H -0.28 -6.77 6.85 56.52 0.39 -6.38 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 13 N -0.54 -10.69 3.19 -233.39 -0.74 -11.43 16 14 C 0.07 1.41 4.12 -4.52 -0.02 1.39 16 15 C -0.12 -1.79 5.41 -27.40 -0.15 -1.94 16 16 C -0.11 -1.54 5.91 -25.69 -0.15 -1.70 16 17 C -0.12 -1.71 4.75 -27.25 -0.13 -1.84 16 18 C -0.08 -1.18 1.49 -91.00 -0.14 -1.32 16 19 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 20 C -0.09 -1.17 2.47 -90.62 -0.22 -1.40 16 21 C -0.14 -1.59 8.80 37.15 0.33 -1.27 16 22 C -0.15 -1.87 8.87 37.16 0.33 -1.54 16 23 C 0.09 1.60 4.02 -6.75 -0.03 1.57 16 24 H 0.06 1.10 7.66 -51.93 -0.40 0.71 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 1.01 3.24 -51.93 -0.17 0.84 16 28 H 0.06 1.28 6.07 -51.93 -0.32 0.97 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.04 0.75 6.10 -51.92 -0.32 0.44 16 31 H 0.07 1.49 5.65 -51.93 -0.29 1.19 16 32 H 0.07 1.08 7.26 -51.93 -0.38 0.70 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.72 5.62 -51.93 -0.29 0.43 16 37 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.58 6.33 -51.92 -0.33 0.25 16 42 H 0.06 0.89 6.07 -51.93 -0.31 0.57 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 1.20 5.28 -51.93 -0.27 0.93 16 46 H 0.02 0.52 6.73 -51.93 -0.35 0.17 16 LS Contribution 320.07 15.07 4.82 4.82 Total: -1.00 -28.30 320.07 -7.95 -36.25 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.26 Total: 0.92 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -0.40 Total: -21.79 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.03 Total: -38.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.15 Total: 17.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.30 -7.95 -36.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703264514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.951 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds