Wall clock time and date at job start Mon Mar 30 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46964 * 2 1 4 4 H 1.08998 * 109.46442 * 58.21216 * 3 2 1 5 5 C 1.50694 * 109.46926 * 178.21070 * 3 2 1 6 6 H 1.08006 * 120.00234 * 120.00513 * 5 3 2 7 7 C 1.37886 * 119.99863 * 299.99946 * 5 3 2 8 8 N 1.31516 * 119.99470 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00108 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46758 * 89.99923 * 9 7 5 11 11 H 1.48495 * 109.46833 * 209.99781 * 9 7 5 12 12 H 1.48500 * 109.47116 * 330.00102 * 9 7 5 13 13 N 1.46900 * 109.47163 * 298.21050 * 3 2 1 14 14 C 1.47628 * 110.99991 * 296.43954 * 13 3 2 15 15 C 1.50811 * 108.05435 * 150.35126 * 14 13 3 16 16 C 1.53823 * 111.62614 * 95.05256 * 15 14 13 17 17 C 1.54166 * 111.96848 * 319.04536 * 16 15 14 18 18 C 1.50751 * 112.61105 * 318.48461 * 17 16 15 19 19 H 1.08995 * 109.54434 * 333.15804 * 18 17 16 20 20 C 1.53002 * 109.54688 * 212.88346 * 18 17 16 21 21 C 1.52994 * 109.46905 * 61.42035 * 20 18 17 22 22 C 1.52996 * 109.46905 * 181.41701 * 20 18 17 23 23 C 1.39773 * 110.99940 * 167.54668 * 13 3 2 24 24 H 1.09004 * 109.47395 * 60.00084 * 1 2 3 25 25 H 1.09006 * 109.47213 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47264 * 299.99694 * 1 2 3 27 27 H 1.08994 * 109.47364 * 119.99903 * 2 1 3 28 28 H 1.09006 * 109.46994 * 240.00757 * 2 1 3 29 29 H 0.97000 * 119.99959 * 180.02562 * 8 7 5 30 30 H 1.09009 * 109.74539 * 269.98594 * 14 13 3 31 31 H 1.08995 * 109.75046 * 30.70496 * 14 13 3 32 32 H 1.09007 * 109.04910 * 334.50039 * 15 14 13 33 33 H 1.09004 * 109.04981 * 215.60794 * 15 14 13 34 34 H 1.09001 * 108.98067 * 198.40155 * 16 15 14 35 35 H 1.09002 * 108.91423 * 79.64103 * 16 15 14 36 36 H 1.09003 * 108.85462 * 197.67966 * 17 16 15 37 37 H 1.08992 * 108.77347 * 79.23833 * 17 16 15 38 38 H 1.08998 * 109.47129 * 301.41951 * 20 18 17 39 39 H 1.09003 * 109.47738 * 53.16767 * 21 20 18 40 40 H 1.09007 * 109.47191 * 173.16789 * 21 20 18 41 41 H 1.09008 * 109.47238 * 293.16558 * 21 20 18 42 42 H 1.09001 * 109.47045 * 60.00414 * 22 20 18 43 43 H 1.09004 * 109.46686 * 179.97438 * 22 20 18 44 44 H 1.08998 * 109.47431 * 300.00065 * 22 20 18 45 45 H 1.09001 * 109.02087 * 309.72001 * 23 13 3 46 46 H 1.09006 * 109.02061 * 68.61095 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6506 1.9654 0.8735 5 6 3.5463 1.4428 0.0444 6 1 4.1100 1.9022 -0.7542 7 6 4.2048 0.8566 1.1045 8 7 5.5194 0.8573 1.1434 9 14 3.2299 0.0616 2.4854 10 1 2.9925 -1.3685 2.1639 11 1 3.9952 0.1635 3.7539 12 1 1.9269 0.7580 2.6360 13 7 1.5859 2.1225 -1.2205 14 6 2.1637 1.4916 -2.4236 15 6 1.1905 1.6756 -3.5609 16 6 1.5348 2.9133 -4.4070 17 6 1.9652 4.1079 -3.5329 18 6 1.1152 4.2578 -2.2969 19 1 0.1263 3.8382 -2.4815 20 6 0.9861 5.7402 -1.9410 21 6 0.2986 6.4822 -3.0888 22 6 0.1526 5.8880 -0.6666 23 6 1.7870 3.5026 -1.1293 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 5.9828 0.4446 1.8890 30 1 3.1124 1.9686 -2.6700 31 1 2.3215 0.4285 -2.2423 32 1 0.1857 1.7910 -3.1543 33 1 1.2159 0.7911 -4.1975 34 1 0.6596 3.1982 -4.9909 35 1 2.3479 2.6609 -5.0877 36 1 1.8920 5.0211 -4.1236 37 1 3.0030 3.9662 -3.2316 38 1 1.9777 6.1623 -1.7777 39 1 -0.6400 5.9846 -3.3328 40 1 0.0972 7.5104 -2.7879 41 1 0.9488 6.4805 -3.9638 42 1 0.6424 5.3593 0.1512 43 1 0.0611 6.9441 -0.4128 44 1 -0.8390 5.4658 -0.8299 45 1 1.3704 3.8609 -0.1880 46 1 2.8576 3.7074 -1.1444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703264514.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:22 Heat of formation + Delta-G solvation = -30.469915 kcal Electronic energy + Delta-G solvation = -20897.329529 eV Core-core repulsion = 18206.508382 eV Total energy + Delta-G solvation = -2690.821146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89099 -37.87689 -35.61815 -34.27403 -33.36736 -31.27157 -29.37047 -28.20564 -26.59595 -25.57135 -24.36234 -22.60989 -21.24863 -21.01035 -19.93934 -18.65769 -17.55055 -16.43291 -16.33640 -15.79323 -15.37073 -15.26208 -15.04243 -14.86061 -14.43275 -14.13965 -13.69290 -13.57821 -13.44190 -13.12988 -13.00735 -12.69972 -12.63935 -12.57415 -12.43463 -12.26220 -12.11030 -11.83307 -11.67429 -11.49685 -11.34850 -11.23857 -11.09952 -11.07493 -10.92886 -10.79693 -10.60034 -8.76900 -8.33345 -6.36921 1.27634 1.32830 1.43544 2.28766 3.02393 3.29764 3.84994 3.94100 4.02897 4.21138 4.23027 4.35276 4.39730 4.43392 4.49994 4.61738 4.68493 4.70741 4.77688 4.87036 4.90103 4.90331 4.98756 5.02190 5.06174 5.11946 5.12049 5.15741 5.19274 5.23504 5.32254 5.35176 5.37997 5.45721 5.49575 5.51801 5.55545 5.58621 5.64159 5.71949 5.75260 6.19293 6.46928 6.72404 6.89961 7.31776 8.83716 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.007252 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.383562 B = 3860.110847 C = 4083.233318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C 0.189 3.811 4 H 0.025 0.975 5 C -0.535 4.535 6 H 0.028 0.972 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.246 1.246 13 N -0.526 5.526 14 C 0.078 3.922 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.065 4.065 19 H 0.084 0.916 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.146 4.146 23 C 0.087 3.913 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.005 0.995 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.060 0.940 46 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 6.227 -8.442 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.081 3.919 4 H 0.043 0.957 5 C -0.574 4.574 6 H 0.046 0.954 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.170 1.170 13 N -0.248 5.248 14 C -0.049 4.049 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.084 4.084 19 H 0.102 0.898 20 C -0.110 4.110 21 C -0.195 4.195 22 C -0.203 4.203 23 C -0.043 4.043 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.078 0.922 46 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -14.467 6.141 -8.404 17.822 hybrid contribution 1.846 -0.400 1.121 2.197 sum -12.621 5.741 -7.284 15.662 Atomic orbital electron populations 1.21617 0.94042 1.01011 1.02222 1.21868 0.96986 0.97354 0.99685 1.19587 0.90802 0.92064 0.89481 0.95698 1.21907 0.92828 1.36133 1.06500 0.95397 1.25854 0.95497 0.96412 1.00636 1.70078 1.09197 1.46792 1.32983 0.85835 0.79239 0.79662 0.77600 1.19169 1.22949 1.16992 1.59331 1.59710 1.03267 1.02500 1.21581 0.94831 0.98243 0.90233 1.21402 0.99818 0.97984 0.95522 1.21864 1.01349 0.94159 0.97329 1.21541 0.98030 0.99193 0.96722 1.21007 0.99625 0.94476 0.93303 0.89757 1.21099 0.99030 0.94386 0.96439 1.21822 1.00528 0.99923 0.97252 1.21875 1.00022 1.01562 0.96823 1.20959 0.95683 0.88678 0.99019 0.90985 0.92527 0.93789 0.95007 0.92520 0.92721 0.97687 0.92413 0.90543 0.91376 0.90241 0.92789 0.90179 0.95807 0.92979 0.91963 0.91946 0.92233 0.94037 0.91853 0.91959 0.92213 1.00281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.77 71.98 0.70 -3.65 16 2 C -0.12 -5.08 4.78 30.60 0.15 -4.94 16 3 C 0.19 8.82 1.28 44.17 0.06 8.87 16 4 H 0.03 1.22 6.84 -2.39 -0.02 1.21 16 5 C -0.53 -30.70 7.90 25.60 0.20 -30.50 16 6 H 0.03 1.82 6.77 -2.91 -0.02 1.80 16 7 C 0.01 0.79 5.45 84.66 0.46 1.26 16 8 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 9 Si 0.95 45.87 24.39 68.60 1.67 47.54 16 10 H -0.27 -12.21 6.85 99.48 0.68 -11.53 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.25 -11.05 6.53 99.48 0.65 -10.40 16 13 N -0.53 -21.03 3.19 -892.31 -2.85 -23.87 16 14 C 0.08 3.03 4.12 85.45 0.35 3.38 16 15 C -0.11 -3.13 5.41 30.16 0.16 -2.97 16 16 C -0.11 -2.75 5.91 31.27 0.18 -2.57 16 17 C -0.12 -3.29 4.75 30.26 0.14 -3.15 16 18 C -0.07 -1.88 1.49 -11.04 -0.02 -1.90 16 19 H 0.08 2.33 7.11 -2.39 -0.02 2.31 16 20 C -0.09 -2.23 2.47 -10.80 -0.03 -2.26 16 21 C -0.14 -2.58 8.80 71.98 0.63 -1.95 16 22 C -0.15 -3.46 8.87 71.98 0.64 -2.82 16 23 C 0.09 3.35 4.02 88.07 0.35 3.70 16 24 H 0.07 2.26 7.66 -2.39 -0.02 2.24 16 25 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.03 1.41 3.24 -2.39 -0.01 1.40 16 28 H 0.06 2.39 6.07 -2.38 -0.01 2.38 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.00 0.21 6.10 -2.38 -0.01 0.20 16 31 H 0.06 2.39 5.65 -2.39 -0.01 2.38 16 32 H 0.08 2.12 7.26 -2.38 -0.02 2.10 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.87 5.62 -2.39 -0.01 1.86 16 37 H 0.02 0.82 6.57 -2.39 -0.02 0.80 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.06 1.06 6.33 -2.38 -0.02 1.04 16 42 H 0.04 1.15 6.07 -2.39 -0.01 1.14 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 2.34 5.28 -2.39 -0.01 2.32 16 46 H -0.02 -0.99 6.73 -2.38 -0.02 -1.01 16 Total: -1.00 -64.96 320.07 3.97 -60.99 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.85 Total: 15.07 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 4.00 Total: -39.47 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -2.55 Total: -84.13 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -64.96 3.97 -60.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703264514.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.522 kcal (2) G-P(sol) polarization free energy of solvation -64.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds