Wall clock time and date at job start Mon Mar 30 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47288 * 2 1 4 4 H 1.08996 * 109.47435 * 184.40527 * 3 2 1 5 5 C 1.50703 * 109.47061 * 64.40435 * 3 2 1 6 6 H 1.07990 * 120.00241 * 242.36725 * 5 3 2 7 7 C 1.37886 * 119.99769 * 62.37142 * 5 3 2 8 8 N 1.31510 * 120.00055 * 190.76181 * 7 5 3 9 9 Si 1.86798 * 119.99778 * 10.76764 * 7 5 3 10 10 H 1.48508 * 109.47352 * 95.53969 * 9 7 5 11 11 H 1.48504 * 109.46668 * 215.53629 * 9 7 5 12 12 H 1.48497 * 109.47334 * 335.53625 * 9 7 5 13 13 N 1.46897 * 109.47339 * 304.40388 * 3 2 1 14 14 C 1.47626 * 111.00331 * 301.47993 * 13 3 2 15 15 C 1.50814 * 108.05786 * 150.34315 * 14 13 3 16 16 C 1.53827 * 111.62100 * 95.05586 * 15 14 13 17 17 C 1.54173 * 111.96892 * 319.04391 * 16 15 14 18 18 C 1.50756 * 112.60926 * 318.48979 * 17 16 15 19 19 H 1.09004 * 109.54227 * 333.15242 * 18 17 16 20 20 C 1.53000 * 109.54283 * 212.88461 * 18 17 16 21 21 C 1.53000 * 109.47506 * 64.47487 * 20 18 17 22 22 C 1.53002 * 109.46895 * 184.47069 * 20 18 17 23 23 C 1.39780 * 111.00311 * 172.57792 * 13 3 2 24 24 H 1.08999 * 109.47123 * 64.91990 * 1 2 3 25 25 H 1.09001 * 109.47102 * 184.92344 * 1 2 3 26 26 H 1.09003 * 109.46650 * 304.92386 * 1 2 3 27 27 H 1.09006 * 109.46839 * 240.00164 * 2 1 3 28 28 H 1.09004 * 109.47119 * 120.00483 * 2 1 3 29 29 H 0.96993 * 120.00184 * 179.97438 * 8 7 5 30 30 H 1.09010 * 109.74378 * 269.98221 * 14 13 3 31 31 H 1.08995 * 109.74653 * 30.70114 * 14 13 3 32 32 H 1.08991 * 109.04986 * 334.50566 * 15 14 13 33 33 H 1.08999 * 108.99558 * 215.56309 * 15 14 13 34 34 H 1.09001 * 108.98233 * 198.40288 * 16 15 14 35 35 H 1.08999 * 108.98129 * 79.68718 * 16 15 14 36 36 H 1.08999 * 108.85559 * 197.68651 * 17 16 15 37 37 H 1.08993 * 108.77085 * 79.24096 * 17 16 15 38 38 H 1.09002 * 109.47344 * 304.46706 * 20 18 17 39 39 H 1.08996 * 109.47403 * 63.78822 * 21 20 18 40 40 H 1.08994 * 109.47064 * 183.79441 * 21 20 18 41 41 H 1.09002 * 109.46910 * 303.79247 * 21 20 18 42 42 H 1.09008 * 109.46974 * 60.00386 * 22 20 18 43 43 H 1.09002 * 109.46996 * 179.97438 * 22 20 18 44 44 H 1.08992 * 109.47556 * 300.00064 * 22 20 18 45 45 H 1.08998 * 109.02152 * 309.72370 * 23 13 3 46 46 H 1.09005 * 109.01172 * 68.61946 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1272 1.4435 -0.0789 5 6 1.6288 2.1206 1.2814 6 1 0.9722 2.9775 1.2522 7 6 2.0910 1.6472 2.4911 8 7 1.5737 2.0958 3.6139 9 14 3.4521 0.3686 2.5351 10 1 4.7616 1.0455 2.7153 11 1 3.2178 -0.5650 3.6660 12 1 3.4590 -0.3912 1.2593 13 7 1.4655 2.1650 -1.1427 14 6 1.8189 1.5075 -2.4163 15 6 0.7085 1.7709 -3.4022 16 6 1.0152 2.9899 -4.2890 17 6 1.6500 4.1425 -3.4855 18 6 0.9983 4.3389 -2.1404 19 1 -0.0342 3.9918 -2.1812 20 6 1.0270 5.8231 -1.7696 21 6 0.1739 6.6137 -2.7636 22 6 0.4669 6.0069 -0.3578 23 6 1.7750 3.5267 -1.0812 24 1 -0.3633 0.4356 -0.9308 25 1 -0.3633 -1.0239 0.0882 26 1 -0.3633 0.5884 0.8426 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.8986 1.7625 4.4648 30 1 2.7540 1.9191 -2.7962 31 1 1.9251 0.4341 -2.2595 32 1 -0.2169 1.9524 -2.8557 33 1 0.5810 0.8932 -4.0359 34 1 0.0879 3.3416 -4.7412 35 1 1.7018 2.6889 -5.0802 36 1 1.5579 5.0645 -4.0595 37 1 2.7075 3.9251 -3.3363 38 1 2.0542 6.1862 -1.8031 39 1 -0.8659 6.2972 -2.6823 40 1 0.2484 7.6779 -2.5403 41 1 0.5316 6.4292 -3.7766 42 1 1.0747 5.4437 0.3505 43 1 0.4877 7.0642 -0.0935 44 1 -0.5603 5.6439 -0.3242 45 1 1.5238 3.9037 -0.0899 46 1 2.8441 3.6559 -1.2498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703264517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:32 Heat of formation + Delta-G solvation = -5.758787 kcal Electronic energy + Delta-G solvation = -20980.682281 eV Core-core repulsion = 18290.932689 eV Total energy + Delta-G solvation = -2689.749591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.45011 -36.35476 -34.37604 -32.33533 -31.49662 -29.98361 -27.41706 -27.05134 -24.84801 -24.54937 -22.69480 -21.18690 -19.80390 -19.37347 -18.48845 -16.49693 -15.88467 -14.95428 -14.55696 -14.31815 -14.07398 -13.86387 -13.45114 -13.29225 -13.12515 -12.69665 -12.39370 -12.02534 -11.91704 -11.52978 -11.44923 -11.38566 -11.13926 -11.00756 -10.94626 -10.66583 -10.50547 -10.40176 -10.10475 -10.01508 -9.97545 -9.84916 -9.66062 -9.35277 -9.05982 -8.80300 -8.44945 -7.06257 -6.05586 -4.00441 3.28101 3.37825 3.40777 4.43766 4.75817 5.07179 5.16416 5.22120 5.27989 5.33211 5.41348 5.51618 5.69673 5.78486 5.92746 5.97040 5.99005 6.05939 6.11137 6.13701 6.16757 6.21539 6.24493 6.31916 6.37512 6.40982 6.48954 6.53731 6.54322 6.56138 6.67864 6.69496 6.79263 6.88840 6.97653 7.00728 7.17495 7.19419 7.30953 7.54543 7.76376 8.09523 8.52645 8.73962 9.02678 9.59463 11.06641 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.008103 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.304290 B = 3454.489543 C = 4243.548927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.194 3.806 4 H -0.011 1.011 5 C -0.503 4.503 6 H 0.083 0.917 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.247 1.247 13 N -0.534 5.534 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.081 4.081 19 H 0.077 0.923 20 C -0.087 4.087 21 C -0.146 4.146 22 C -0.150 4.150 23 C 0.078 3.922 24 H 0.050 0.950 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.262 0.738 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.104 0.896 46 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 3.154 -13.118 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.087 3.913 4 H 0.006 0.994 5 C -0.541 4.541 6 H 0.101 0.899 7 C -0.127 4.127 8 N -0.533 5.533 9 Si 0.684 3.316 10 H -0.212 1.212 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.258 5.258 14 C -0.072 4.072 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.155 4.155 18 C -0.100 4.100 19 H 0.095 0.905 20 C -0.106 4.106 21 C -0.203 4.203 22 C -0.207 4.207 23 C -0.051 4.051 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.122 0.878 46 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -1.467 3.120 -12.885 13.338 hybrid contribution 1.715 -0.665 0.092 1.842 sum 0.248 2.455 -12.792 13.028 Atomic orbital electron populations 1.21474 0.95726 0.98187 1.02733 1.22068 0.97068 0.97927 0.98702 1.19551 0.91415 0.90828 0.89500 0.99404 1.20942 1.29915 1.15307 0.87961 0.89873 1.24860 0.96198 0.96045 0.95600 1.69923 1.41289 1.44582 0.97517 0.87429 0.83141 0.82559 0.78519 1.21176 1.21384 1.17164 1.58665 1.63109 1.02341 1.01677 1.21846 0.95655 0.99206 0.90479 1.21415 1.00565 0.96326 0.96921 1.21874 0.99784 0.95717 0.97657 1.21565 0.99803 0.97617 0.96471 1.21122 1.00920 0.93809 0.94185 0.90470 1.21067 0.99086 0.95140 0.95335 1.21899 1.00069 0.99288 0.99062 1.21927 1.01697 1.00638 0.96465 1.21150 0.94725 0.88492 1.00725 0.93137 0.96239 0.91263 0.95343 0.92545 0.92810 0.95584 0.91146 0.90608 0.93156 0.92927 0.93256 0.92509 0.92952 0.91947 0.92870 0.93336 0.92823 0.91024 0.93701 0.92715 0.87786 0.98392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 9.51 37.16 0.35 -2.19 16 2 C -0.12 -2.60 4.45 -26.73 -0.12 -2.72 16 3 C 0.19 4.47 1.36 -68.87 -0.09 4.38 16 4 H -0.01 -0.28 7.09 -51.93 -0.37 -0.65 16 5 C -0.50 -13.39 7.10 -34.44 -0.24 -13.63 16 6 H 0.08 2.40 6.50 -52.49 -0.34 2.06 16 7 C 0.07 2.08 5.38 -17.82 -0.10 1.99 16 8 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 9 Si 0.86 20.91 25.71 -169.99 -4.37 16.54 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.69 5.09 56.52 0.29 -5.40 16 13 N -0.53 -10.66 3.01 -233.40 -0.70 -11.36 16 14 C 0.06 0.95 4.98 -4.52 -0.02 0.93 16 15 C -0.11 -1.67 5.41 -27.40 -0.15 -1.82 16 16 C -0.11 -1.46 5.91 -25.69 -0.15 -1.62 16 17 C -0.12 -1.62 4.75 -27.24 -0.13 -1.75 16 18 C -0.08 -1.26 1.50 -91.00 -0.14 -1.40 16 19 H 0.08 1.28 7.11 -51.93 -0.37 0.91 16 20 C -0.09 -1.23 2.46 -90.62 -0.22 -1.46 16 21 C -0.15 -1.73 9.04 37.16 0.34 -1.40 16 22 C -0.15 -2.30 8.80 37.16 0.33 -1.97 16 23 C 0.08 1.51 4.03 -6.75 -0.03 1.48 16 24 H 0.05 0.98 7.49 -51.93 -0.39 0.59 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 1.61 7.21 -51.93 -0.37 1.24 16 27 H 0.03 0.56 6.12 -51.93 -0.32 0.24 16 28 H 0.06 1.30 4.18 -51.93 -0.22 1.08 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 30 H 0.03 0.45 6.66 -51.92 -0.35 0.10 16 31 H 0.07 1.22 5.46 -51.93 -0.28 0.94 16 32 H 0.08 1.21 7.26 -51.93 -0.38 0.84 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.70 5.69 -51.93 -0.30 0.41 16 37 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.59 6.12 -51.93 -0.32 0.27 16 42 H 0.07 1.27 6.00 -51.92 -0.31 0.96 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 2.26 2.91 -51.93 -0.15 2.11 16 46 H 0.00 -0.04 7.54 -51.93 -0.39 -0.43 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -27.48 318.15 -8.13 -35.60 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.25 Total: 1.37 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.38 Total: -21.17 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.07 Total: -37.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.37 Total: 16.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.48 -8.13 -35.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703264517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.846 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds