Wall clock time and date at job start Mon Mar 30 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47288 * 2 1 4 4 H 1.08996 * 109.47435 * 184.40527 * 3 2 1 5 5 C 1.50703 * 109.47061 * 64.40435 * 3 2 1 6 6 H 1.07990 * 120.00241 * 242.36725 * 5 3 2 7 7 C 1.37886 * 119.99769 * 62.37142 * 5 3 2 8 8 N 1.31510 * 120.00055 * 190.76181 * 7 5 3 9 9 Si 1.86798 * 119.99778 * 10.76764 * 7 5 3 10 10 H 1.48508 * 109.47352 * 95.53969 * 9 7 5 11 11 H 1.48504 * 109.46668 * 215.53629 * 9 7 5 12 12 H 1.48497 * 109.47334 * 335.53625 * 9 7 5 13 13 N 1.46897 * 109.47339 * 304.40388 * 3 2 1 14 14 C 1.47626 * 111.00331 * 301.47993 * 13 3 2 15 15 C 1.50814 * 108.05786 * 150.34315 * 14 13 3 16 16 C 1.53827 * 111.62100 * 95.05586 * 15 14 13 17 17 C 1.54173 * 111.96892 * 319.04391 * 16 15 14 18 18 C 1.50756 * 112.60926 * 318.48979 * 17 16 15 19 19 H 1.09004 * 109.54227 * 333.15242 * 18 17 16 20 20 C 1.53000 * 109.54283 * 212.88461 * 18 17 16 21 21 C 1.53000 * 109.47506 * 64.47487 * 20 18 17 22 22 C 1.53002 * 109.46895 * 184.47069 * 20 18 17 23 23 C 1.39780 * 111.00311 * 172.57792 * 13 3 2 24 24 H 1.08999 * 109.47123 * 64.91990 * 1 2 3 25 25 H 1.09001 * 109.47102 * 184.92344 * 1 2 3 26 26 H 1.09003 * 109.46650 * 304.92386 * 1 2 3 27 27 H 1.09006 * 109.46839 * 240.00164 * 2 1 3 28 28 H 1.09004 * 109.47119 * 120.00483 * 2 1 3 29 29 H 0.96993 * 120.00184 * 179.97438 * 8 7 5 30 30 H 1.09010 * 109.74378 * 269.98221 * 14 13 3 31 31 H 1.08995 * 109.74653 * 30.70114 * 14 13 3 32 32 H 1.08991 * 109.04986 * 334.50566 * 15 14 13 33 33 H 1.08999 * 108.99558 * 215.56309 * 15 14 13 34 34 H 1.09001 * 108.98233 * 198.40288 * 16 15 14 35 35 H 1.08999 * 108.98129 * 79.68718 * 16 15 14 36 36 H 1.08999 * 108.85559 * 197.68651 * 17 16 15 37 37 H 1.08993 * 108.77085 * 79.24096 * 17 16 15 38 38 H 1.09002 * 109.47344 * 304.46706 * 20 18 17 39 39 H 1.08996 * 109.47403 * 63.78822 * 21 20 18 40 40 H 1.08994 * 109.47064 * 183.79441 * 21 20 18 41 41 H 1.09002 * 109.46910 * 303.79247 * 21 20 18 42 42 H 1.09008 * 109.46974 * 60.00386 * 22 20 18 43 43 H 1.09002 * 109.46996 * 179.97438 * 22 20 18 44 44 H 1.08992 * 109.47556 * 300.00064 * 22 20 18 45 45 H 1.08998 * 109.02152 * 309.72370 * 23 13 3 46 46 H 1.09005 * 109.01172 * 68.61946 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1272 1.4435 -0.0789 5 6 1.6288 2.1206 1.2814 6 1 0.9722 2.9775 1.2522 7 6 2.0910 1.6472 2.4911 8 7 1.5737 2.0958 3.6139 9 14 3.4521 0.3686 2.5351 10 1 4.7616 1.0455 2.7153 11 1 3.2178 -0.5650 3.6660 12 1 3.4590 -0.3912 1.2593 13 7 1.4655 2.1650 -1.1427 14 6 1.8189 1.5075 -2.4163 15 6 0.7085 1.7709 -3.4022 16 6 1.0152 2.9899 -4.2890 17 6 1.6500 4.1425 -3.4855 18 6 0.9983 4.3389 -2.1404 19 1 -0.0342 3.9918 -2.1812 20 6 1.0270 5.8231 -1.7696 21 6 0.1739 6.6137 -2.7636 22 6 0.4669 6.0069 -0.3578 23 6 1.7750 3.5267 -1.0812 24 1 -0.3633 0.4356 -0.9308 25 1 -0.3633 -1.0239 0.0882 26 1 -0.3633 0.5884 0.8426 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.8986 1.7625 4.4648 30 1 2.7540 1.9191 -2.7962 31 1 1.9251 0.4341 -2.2595 32 1 -0.2169 1.9524 -2.8557 33 1 0.5810 0.8932 -4.0359 34 1 0.0879 3.3416 -4.7412 35 1 1.7018 2.6889 -5.0802 36 1 1.5579 5.0645 -4.0595 37 1 2.7075 3.9251 -3.3363 38 1 2.0542 6.1862 -1.8031 39 1 -0.8659 6.2972 -2.6823 40 1 0.2484 7.6779 -2.5403 41 1 0.5316 6.4292 -3.7766 42 1 1.0747 5.4437 0.3505 43 1 0.4877 7.0642 -0.0935 44 1 -0.5603 5.6439 -0.3242 45 1 1.5238 3.9037 -0.0899 46 1 2.8441 3.6559 -1.2498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703264517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:31 Heat of formation + Delta-G solvation = -20.662047 kcal Electronic energy + Delta-G solvation = -20981.328535 eV Core-core repulsion = 18290.932689 eV Total energy + Delta-G solvation = -2690.395845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88234 -37.83541 -35.74013 -34.16727 -33.23763 -31.28160 -29.08303 -28.36514 -26.34655 -25.94566 -24.38688 -22.64751 -21.16890 -20.90172 -19.79941 -18.49573 -17.52100 -16.51291 -16.03450 -15.77916 -15.32206 -15.21934 -15.07839 -14.81412 -14.68438 -14.33643 -13.97216 -13.41490 -13.07561 -13.04008 -12.92800 -12.78309 -12.65822 -12.42146 -12.39238 -12.27812 -12.06628 -11.84528 -11.67616 -11.60413 -11.28245 -11.12255 -11.00438 -10.94729 -10.77190 -10.64033 -10.47671 -8.71153 -8.22985 -6.20634 1.30855 1.36593 1.43899 2.36875 3.10472 3.30525 3.87316 3.94571 4.05666 4.19006 4.22928 4.38669 4.41406 4.45929 4.54874 4.60792 4.65110 4.71024 4.76956 4.84293 4.87052 4.90379 4.98896 5.01813 5.10638 5.11295 5.15703 5.17084 5.24887 5.29068 5.35913 5.37435 5.40735 5.45306 5.46800 5.52472 5.62015 5.72510 5.73486 5.77830 5.86008 6.17045 6.69968 6.84865 7.03489 7.42852 8.92636 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.008103 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.304290 B = 3454.489543 C = 4243.548927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C 0.195 3.805 4 H -0.024 1.024 5 C -0.491 4.491 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.944 5.944 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.220 1.220 13 N -0.538 5.538 14 C 0.056 3.944 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.069 4.069 19 H 0.068 0.932 20 C -0.086 4.086 21 C -0.138 4.138 22 C -0.147 4.147 23 C 0.081 3.919 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.069 0.931 46 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 2.425 -16.454 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.158 4.158 3 C 0.088 3.912 4 H -0.007 1.007 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.143 1.143 13 N -0.262 5.262 14 C -0.071 4.071 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.088 4.088 19 H 0.086 0.914 20 C -0.105 4.105 21 C -0.195 4.195 22 C -0.204 4.204 23 C -0.049 4.049 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -1.294 2.387 -16.257 16.483 hybrid contribution 1.617 -0.354 1.137 2.008 sum 0.322 2.033 -15.121 15.260 Atomic orbital electron populations 1.21345 0.94978 0.99167 1.01582 1.22019 0.97724 0.96565 0.99468 1.19427 0.90696 0.92003 0.89117 1.00708 1.21110 1.28103 1.13878 0.89849 0.93692 1.25609 0.98495 0.98491 0.95242 1.70065 1.43340 1.46873 0.98168 0.86525 0.79759 0.80384 0.79637 1.21517 1.21356 1.14261 1.58687 1.62849 1.02462 1.02179 1.21961 0.96931 0.98862 0.89342 1.21361 0.98516 0.98296 0.96641 1.21863 1.00961 0.94406 0.97423 1.21532 0.98858 0.99349 0.95446 1.20993 0.99724 0.93916 0.94156 0.91357 1.21075 0.99675 0.94692 0.95038 1.21830 0.99399 0.99514 0.98805 1.21875 1.00560 1.01035 0.96910 1.21097 0.94424 0.88820 1.00518 0.92077 0.93644 0.95062 0.92369 0.93760 0.92948 0.95371 0.90964 0.92148 0.90835 0.91272 0.91484 0.90280 0.94067 0.91894 0.92848 0.92039 0.91265 0.94660 0.91973 0.93394 0.91288 0.99867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.51 71.98 0.68 -3.85 16 2 C -0.12 -5.02 4.45 30.59 0.14 -4.88 16 3 C 0.20 9.05 1.36 44.17 0.06 9.11 16 4 H -0.02 -1.19 7.09 -2.39 -0.02 -1.21 16 5 C -0.49 -27.35 7.10 25.60 0.18 -27.17 16 6 H 0.04 2.80 6.50 -2.92 -0.02 2.78 16 7 C 0.02 1.09 5.38 84.66 0.46 1.54 16 8 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 9 Si 0.91 43.78 25.71 68.60 1.76 45.54 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 12 H -0.22 -9.51 5.09 99.48 0.51 -9.01 16 13 N -0.54 -21.47 3.01 -892.33 -2.69 -24.16 16 14 C 0.06 1.79 4.98 85.45 0.43 2.22 16 15 C -0.11 -2.87 5.41 30.16 0.16 -2.71 16 16 C -0.11 -2.41 5.91 31.27 0.18 -2.22 16 17 C -0.11 -2.86 4.75 30.26 0.14 -2.72 16 18 C -0.07 -2.10 1.50 -11.04 -0.02 -2.11 16 19 H 0.07 2.22 7.11 -2.38 -0.02 2.20 16 20 C -0.09 -2.36 2.46 -10.79 -0.03 -2.39 16 21 C -0.14 -2.91 9.04 71.98 0.65 -2.26 16 22 C -0.15 -4.66 8.80 71.98 0.63 -4.02 16 23 C 0.08 3.21 4.03 88.07 0.36 3.56 16 24 H 0.06 2.28 7.49 -2.39 -0.02 2.26 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.03 1.46 7.21 -2.39 -0.02 1.44 16 27 H 0.06 2.10 6.12 -2.38 -0.01 2.09 16 28 H 0.04 1.95 4.18 -2.38 -0.01 1.94 16 29 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.03 0.90 6.66 -2.38 -0.02 0.89 16 31 H 0.07 2.29 5.46 -2.39 -0.01 2.27 16 32 H 0.06 1.79 7.26 -2.39 -0.02 1.77 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.65 5.69 -2.39 -0.01 1.64 16 37 H 0.04 1.13 6.57 -2.39 -0.02 1.12 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.26 6.12 -2.39 -0.01 1.24 16 42 H 0.03 1.36 6.00 -2.38 -0.01 1.35 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 3.24 2.91 -2.39 -0.01 3.23 16 46 H -0.02 -0.69 7.54 -2.38 -0.02 -0.71 16 Total: -1.00 -62.45 318.15 4.14 -58.31 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.73 Total: 16.63 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 4.03 Total: -37.91 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.39 Total: -82.57 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.76 Total: 45.54 kcal Total: -62.45 4.14 -58.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703264517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.643 kcal (2) G-P(sol) polarization free energy of solvation -62.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds