Wall clock time and date at job start Mon Mar 30 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47164 * 2 1 4 4 H 1.09000 * 109.47533 * 300.58180 * 3 2 1 5 5 C 1.50701 * 109.46868 * 180.58190 * 3 2 1 6 6 H 1.08004 * 119.99791 * 234.33007 * 5 3 2 7 7 C 1.37873 * 120.00210 * 54.32959 * 5 3 2 8 8 N 1.31512 * 120.00035 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00130 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46996 * 89.99887 * 9 7 5 11 11 H 1.48498 * 109.46862 * 210.00231 * 9 7 5 12 12 H 1.48504 * 109.46902 * 330.00053 * 9 7 5 13 13 N 1.46898 * 109.47089 * 60.58324 * 3 2 1 14 14 C 1.46904 * 111.00252 * 161.93274 * 13 3 2 15 15 C 1.46908 * 110.99915 * 37.97953 * 13 3 2 16 16 H 1.08998 * 108.76859 * 318.40215 * 15 13 3 17 17 C 1.50474 * 108.87667 * 76.91945 * 15 13 3 18 18 C 1.54243 * 108.51681 * 214.92477 * 17 15 13 19 19 C 1.45535 * 112.41071 * 280.01282 * 18 17 15 20 20 C 1.54239 * 112.40915 * 61.93533 * 19 18 17 21 21 H 1.09006 * 109.62437 * 39.72346 * 20 19 18 22 22 C 1.52998 * 109.79189 * 160.21253 * 20 19 18 23 23 C 1.50479 * 108.51928 * 280.02025 * 20 19 18 24 24 C 1.54060 * 112.50071 * 94.14705 * 23 20 19 25 25 H 1.08991 * 109.47413 * 185.67457 * 1 2 3 26 26 H 1.09004 * 109.46577 * 305.67080 * 1 2 3 27 27 H 1.08996 * 109.47097 * 65.66656 * 1 2 3 28 28 H 1.08999 * 109.46803 * 240.00579 * 2 1 3 29 29 H 1.09002 * 109.47263 * 120.00595 * 2 1 3 30 30 H 0.97001 * 120.00134 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46957 * 288.80760 * 14 13 3 32 32 H 1.08997 * 109.46804 * 48.80728 * 14 13 3 33 33 H 1.08996 * 109.47071 * 168.81135 * 14 13 3 34 34 H 1.08994 * 109.62626 * 95.21611 * 17 15 13 35 35 H 1.08997 * 109.62581 * 334.63322 * 17 15 13 36 36 H 1.09003 * 108.88928 * 159.25773 * 18 17 15 37 37 H 1.09005 * 108.81617 * 40.71782 * 18 17 15 38 38 H 1.09001 * 108.89296 * 301.18389 * 19 18 17 39 39 H 1.08995 * 108.82207 * 182.63937 * 19 18 17 40 40 H 1.09002 * 109.47031 * 179.12846 * 22 20 19 41 41 H 1.08999 * 109.47080 * 299.12474 * 22 20 19 42 42 H 1.08998 * 109.47360 * 59.12862 * 22 20 19 43 43 H 1.08998 * 108.87348 * 333.37053 * 23 20 19 44 44 H 1.09004 * 108.79233 * 214.87289 * 23 20 19 45 45 H 1.09006 * 108.81214 * 79.13968 * 24 23 20 46 46 H 1.09000 * 108.81191 * 197.41889 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6682 1.9594 -0.8847 5 6 3.5470 1.4424 -0.0144 6 1 4.0942 1.9853 0.7421 7 6 4.2270 0.7495 -0.9933 8 7 3.5606 0.0881 -1.9142 9 14 6.0950 0.7500 -1.0116 10 1 6.5982 -0.3898 -0.2036 11 1 6.5763 0.6163 -2.4100 12 1 6.5952 2.0241 -0.4356 13 7 1.5619 2.1309 1.2064 14 6 2.3509 3.3419 1.4692 15 6 1.5771 1.2306 2.3672 16 1 1.2117 0.2518 2.0566 17 6 2.9934 1.0893 2.8552 18 6 3.1919 -0.3500 3.3729 19 6 2.6623 -0.5347 4.7158 20 6 1.1402 -0.2950 4.7857 21 1 0.6626 -0.7138 3.8999 22 6 0.5684 -0.9585 6.0401 23 6 0.8919 1.1881 4.8404 24 6 0.6348 1.7946 3.4478 25 1 -0.3634 -1.0225 0.1016 26 1 -0.3632 0.5993 0.8349 27 1 -0.3633 0.4234 -0.9363 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0390 -0.3992 -2.6031 31 1 3.3479 3.0597 1.8073 32 1 2.4301 3.9294 0.5545 33 1 1.8600 3.9351 2.2407 34 1 3.1744 1.7975 3.6638 35 1 3.6844 1.2818 2.0345 36 1 4.2576 -0.5790 3.3791 37 1 2.6870 -1.0397 2.6964 38 1 3.1605 0.1615 5.3905 39 1 2.8745 -1.5532 5.0406 40 1 -0.5044 -0.7729 6.0924 41 1 0.7496 -2.0325 5.9978 42 1 1.0525 -0.5429 6.9239 43 1 1.7613 1.6751 5.2821 44 1 0.0240 1.3758 5.4726 45 1 -0.3956 1.5870 3.1587 46 1 0.7710 2.8746 3.5041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704568099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:08 Heat of formation + Delta-G solvation = -0.367204 kcal Electronic energy + Delta-G solvation = -21293.440835 eV Core-core repulsion = 18603.925040 eV Total energy + Delta-G solvation = -2689.515795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.58603 -36.74531 -33.07935 -32.23533 -31.37366 -30.70389 -26.95570 -26.56587 -25.27510 -23.54694 -22.65301 -21.64685 -20.05450 -19.49051 -17.56887 -16.68454 -15.45474 -14.85771 -14.63458 -14.29489 -14.17247 -13.53733 -13.06619 -12.93424 -12.83435 -12.59121 -12.21715 -11.98098 -11.71103 -11.62758 -11.51053 -11.17503 -10.89387 -10.86473 -10.73122 -10.59912 -10.41348 -10.22324 -10.18404 -9.99992 -9.89218 -9.80306 -9.59412 -9.41139 -8.94937 -8.72963 -8.29788 -6.98200 -5.93744 -4.08897 3.25897 3.33742 3.35868 4.39078 4.90580 5.01478 5.14059 5.24844 5.28532 5.54263 5.64895 5.74154 5.82925 5.87038 5.92886 5.97483 6.07412 6.12092 6.25410 6.30260 6.37125 6.42470 6.46785 6.50659 6.53927 6.57764 6.62730 6.64893 6.67864 6.70209 6.85125 6.89702 6.94787 7.04613 7.13933 7.23758 7.35753 7.43341 7.72958 7.83861 8.12817 8.21202 8.46780 8.56859 8.99782 9.57221 11.00851 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.007866 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.343498 B = 3558.794587 C = 3869.856357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.213 3.787 4 H 0.034 0.966 5 C -0.540 4.540 6 H 0.069 0.931 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.540 5.540 14 C 0.036 3.964 15 C 0.081 3.919 16 H 0.090 0.910 17 C -0.164 4.164 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.091 4.091 21 H 0.073 0.927 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.107 4.107 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 -0.439 11.303 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.579 4.579 6 H 0.087 0.913 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.710 3.290 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.263 5.263 14 C -0.113 4.113 15 C -0.027 4.027 16 H 0.108 0.892 17 C -0.202 4.202 18 C -0.153 4.153 19 C -0.143 4.143 20 C -0.110 4.110 21 H 0.091 0.909 22 C -0.201 4.201 23 C -0.146 4.146 24 C -0.145 4.145 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.421 -0.395 11.026 11.886 hybrid contribution 1.967 -0.313 0.092 1.994 sum -2.454 -0.707 11.118 11.407 Atomic orbital electron populations 1.21846 0.99192 0.98511 1.00755 1.21931 0.91819 0.99697 1.03175 1.19267 0.92287 0.90482 0.87267 0.94798 1.21902 0.92755 1.31326 1.11915 0.91307 1.24911 0.97793 0.95229 0.95452 1.69810 1.34782 1.32545 1.15112 0.86750 0.86544 0.78385 0.77295 1.20732 1.21232 1.20011 1.62598 1.53057 1.06418 1.04184 1.22188 0.96296 0.93171 0.99662 1.21575 0.93229 0.97850 0.90066 0.89175 1.22546 1.00712 0.94837 1.02127 1.20373 1.00099 0.98661 0.96121 1.20541 0.95041 1.00468 0.98240 1.20911 0.95933 0.95988 0.98149 0.90860 1.21883 1.00248 1.00113 0.97841 1.21373 1.00674 0.95141 0.97431 1.21939 0.99449 0.99810 0.93322 0.95614 0.93125 0.94208 0.87913 0.94051 0.92981 0.94756 0.92691 0.94544 0.93950 0.86706 0.93282 0.92211 0.92963 0.93269 0.93019 0.93103 0.93165 0.92714 0.93044 0.92893 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.33 37.16 0.35 -2.60 16 2 C -0.13 -2.97 4.59 -26.73 -0.12 -3.10 16 3 C 0.21 5.13 2.25 -68.86 -0.15 4.98 16 4 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 5 C -0.54 -13.78 6.33 -34.44 -0.22 -14.00 16 6 H 0.07 1.74 4.19 -52.48 -0.22 1.53 16 7 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 8 N -0.88 -24.27 10.91 55.43 0.60 -23.66 16 9 Si 0.88 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.54 -11.24 4.25 -229.14 -0.97 -12.22 16 14 C 0.04 0.70 8.15 60.07 0.49 1.19 16 15 C 0.08 1.50 0.56 -68.41 -0.04 1.47 16 16 H 0.09 1.78 2.83 -51.93 -0.15 1.63 16 17 C -0.16 -3.05 3.43 -27.34 -0.09 -3.14 16 18 C -0.11 -1.94 5.24 -29.60 -0.16 -2.10 16 19 C -0.11 -1.49 4.69 -29.60 -0.14 -1.63 16 20 C -0.09 -1.23 2.39 -91.23 -0.22 -1.45 16 21 H 0.07 1.09 6.98 -51.93 -0.36 0.73 16 22 C -0.14 -1.60 8.88 37.16 0.33 -1.27 16 23 C -0.11 -1.48 4.89 -27.44 -0.13 -1.61 16 24 C -0.11 -1.71 5.41 -25.62 -0.14 -1.85 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.99 6.48 -51.93 -0.34 0.65 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.10 2.69 5.62 -51.93 -0.29 2.40 16 29 H 0.04 0.95 4.76 -51.93 -0.25 0.70 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.03 0.70 4.62 -51.93 -0.24 0.46 16 32 H 0.05 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.04 0.64 6.85 -51.93 -0.36 0.28 16 34 H 0.04 0.74 6.97 -51.93 -0.36 0.38 16 35 H 0.12 2.50 3.22 -51.93 -0.17 2.34 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.09 6.38 -51.93 -0.33 0.76 16 38 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 39 H 0.05 0.65 7.98 -51.93 -0.41 0.23 16 40 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.75 6.63 -51.93 -0.34 0.41 16 44 H 0.05 0.63 7.67 -51.93 -0.40 0.24 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.89 6.58 -51.93 -0.34 0.55 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -25.61 314.13 -8.88 -34.49 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.88 Total: 4.38 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -0.34 Total: -23.40 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.37 Total: -35.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.61 -8.88 -34.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704568099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.122 kcal (2) G-P(sol) polarization free energy of solvation -25.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds