Wall clock time and date at job start Mon Mar 30 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47164 * 2 1 4 4 H 1.09000 * 109.47533 * 300.58180 * 3 2 1 5 5 C 1.50701 * 109.46868 * 180.58190 * 3 2 1 6 6 H 1.08004 * 119.99791 * 234.33007 * 5 3 2 7 7 C 1.37873 * 120.00210 * 54.32959 * 5 3 2 8 8 N 1.31512 * 120.00035 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00130 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46996 * 89.99887 * 9 7 5 11 11 H 1.48498 * 109.46862 * 210.00231 * 9 7 5 12 12 H 1.48504 * 109.46902 * 330.00053 * 9 7 5 13 13 N 1.46898 * 109.47089 * 60.58324 * 3 2 1 14 14 C 1.46904 * 111.00252 * 161.93274 * 13 3 2 15 15 C 1.46908 * 110.99915 * 37.97953 * 13 3 2 16 16 H 1.08998 * 108.76859 * 318.40215 * 15 13 3 17 17 C 1.50474 * 108.87667 * 76.91945 * 15 13 3 18 18 C 1.54243 * 108.51681 * 214.92477 * 17 15 13 19 19 C 1.45535 * 112.41071 * 280.01282 * 18 17 15 20 20 C 1.54239 * 112.40915 * 61.93533 * 19 18 17 21 21 H 1.09006 * 109.62437 * 39.72346 * 20 19 18 22 22 C 1.52998 * 109.79189 * 160.21253 * 20 19 18 23 23 C 1.50479 * 108.51928 * 280.02025 * 20 19 18 24 24 C 1.54060 * 112.50071 * 94.14705 * 23 20 19 25 25 H 1.08991 * 109.47413 * 185.67457 * 1 2 3 26 26 H 1.09004 * 109.46577 * 305.67080 * 1 2 3 27 27 H 1.08996 * 109.47097 * 65.66656 * 1 2 3 28 28 H 1.08999 * 109.46803 * 240.00579 * 2 1 3 29 29 H 1.09002 * 109.47263 * 120.00595 * 2 1 3 30 30 H 0.97001 * 120.00134 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46957 * 288.80760 * 14 13 3 32 32 H 1.08997 * 109.46804 * 48.80728 * 14 13 3 33 33 H 1.08996 * 109.47071 * 168.81135 * 14 13 3 34 34 H 1.08994 * 109.62626 * 95.21611 * 17 15 13 35 35 H 1.08997 * 109.62581 * 334.63322 * 17 15 13 36 36 H 1.09003 * 108.88928 * 159.25773 * 18 17 15 37 37 H 1.09005 * 108.81617 * 40.71782 * 18 17 15 38 38 H 1.09001 * 108.89296 * 301.18389 * 19 18 17 39 39 H 1.08995 * 108.82207 * 182.63937 * 19 18 17 40 40 H 1.09002 * 109.47031 * 179.12846 * 22 20 19 41 41 H 1.08999 * 109.47080 * 299.12474 * 22 20 19 42 42 H 1.08998 * 109.47360 * 59.12862 * 22 20 19 43 43 H 1.08998 * 108.87348 * 333.37053 * 23 20 19 44 44 H 1.09004 * 108.79233 * 214.87289 * 23 20 19 45 45 H 1.09006 * 108.81214 * 79.13968 * 24 23 20 46 46 H 1.09000 * 108.81191 * 197.41889 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6682 1.9594 -0.8847 5 6 3.5470 1.4424 -0.0144 6 1 4.0942 1.9853 0.7421 7 6 4.2270 0.7495 -0.9933 8 7 3.5606 0.0881 -1.9142 9 14 6.0950 0.7500 -1.0116 10 1 6.5982 -0.3898 -0.2036 11 1 6.5763 0.6163 -2.4100 12 1 6.5952 2.0241 -0.4356 13 7 1.5619 2.1309 1.2064 14 6 2.3509 3.3419 1.4692 15 6 1.5771 1.2306 2.3672 16 1 1.2117 0.2518 2.0566 17 6 2.9934 1.0893 2.8552 18 6 3.1919 -0.3500 3.3729 19 6 2.6623 -0.5347 4.7158 20 6 1.1402 -0.2950 4.7857 21 1 0.6626 -0.7138 3.8999 22 6 0.5684 -0.9585 6.0401 23 6 0.8919 1.1881 4.8404 24 6 0.6348 1.7946 3.4478 25 1 -0.3634 -1.0225 0.1016 26 1 -0.3632 0.5993 0.8349 27 1 -0.3633 0.4234 -0.9363 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0390 -0.3992 -2.6031 31 1 3.3479 3.0597 1.8073 32 1 2.4301 3.9294 0.5545 33 1 1.8600 3.9351 2.2407 34 1 3.1744 1.7975 3.6638 35 1 3.6844 1.2818 2.0345 36 1 4.2576 -0.5790 3.3791 37 1 2.6870 -1.0397 2.6964 38 1 3.1605 0.1615 5.3905 39 1 2.8745 -1.5532 5.0406 40 1 -0.5044 -0.7729 6.0924 41 1 0.7496 -2.0325 5.9978 42 1 1.0525 -0.5429 6.9239 43 1 1.7613 1.6751 5.2821 44 1 0.0240 1.3758 5.4726 45 1 -0.3956 1.5870 3.1587 46 1 0.7710 2.8746 3.5041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704568099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:08 Heat of formation + Delta-G solvation = -13.009574 kcal Electronic energy + Delta-G solvation = -21293.989049 eV Core-core repulsion = 18603.925040 eV Total energy + Delta-G solvation = -2690.064009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06355 -38.18557 -34.88359 -33.50982 -33.19780 -32.13293 -28.55595 -28.02962 -26.89737 -25.08489 -23.99774 -23.24031 -21.55720 -20.91190 -19.10227 -18.57572 -17.21597 -16.34904 -16.14014 -15.90018 -15.34039 -14.98309 -14.75561 -14.41150 -14.22958 -13.91844 -13.60086 -13.41522 -13.22774 -13.16075 -13.01361 -12.84947 -12.71546 -12.46219 -12.24391 -12.10859 -12.02206 -11.71328 -11.66433 -11.46155 -11.22639 -11.19214 -11.13039 -10.98009 -10.61924 -10.47818 -10.28606 -8.75689 -7.92908 -6.16522 1.36839 1.39928 1.46885 2.41911 3.19741 3.53026 3.77671 3.97071 4.15303 4.33080 4.40612 4.45701 4.55158 4.61174 4.66574 4.70591 4.75526 4.83966 4.85764 4.91812 4.93416 4.97180 5.00950 5.14491 5.19520 5.22391 5.25240 5.29277 5.31035 5.39519 5.40968 5.45335 5.51588 5.53791 5.58924 5.67554 5.68687 5.70503 5.89787 5.93759 6.19282 6.32938 6.52180 6.85221 7.03222 7.52464 8.96781 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.007866 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.343498 B = 3558.794587 C = 3869.856357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.219 3.781 4 H -0.006 1.006 5 C -0.539 4.539 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.937 3.063 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.542 5.542 14 C 0.040 3.960 15 C 0.086 3.914 16 H 0.077 0.923 17 C -0.159 4.159 18 C -0.108 4.108 19 C -0.103 4.103 20 C -0.090 4.090 21 H 0.056 0.944 22 C -0.139 4.139 23 C -0.103 4.103 24 C -0.101 4.101 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.258 0.742 31 H 0.027 0.973 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -0.388 13.855 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.578 4.578 6 H 0.088 0.912 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.764 3.236 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.265 5.265 14 C -0.109 4.109 15 C -0.023 4.023 16 H 0.095 0.905 17 C -0.197 4.197 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.109 4.109 21 H 0.075 0.925 22 C -0.196 4.196 23 C -0.141 4.141 24 C -0.140 4.140 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.811 -0.336 13.595 14.425 hybrid contribution 2.072 -0.300 -0.703 2.208 sum -2.739 -0.635 12.892 13.196 Atomic orbital electron populations 1.21711 0.96829 0.99897 1.00698 1.21734 0.93872 0.98657 1.01514 1.19020 0.91576 0.90781 0.87449 0.98833 1.22164 0.93695 1.30467 1.11465 0.91194 1.25569 1.01381 0.95395 0.95473 1.69960 1.35963 1.33470 1.15729 0.85876 0.82320 0.78370 0.77021 1.20509 1.21344 1.19564 1.62546 1.52871 1.06920 1.04127 1.22166 0.96171 0.92787 0.99767 1.21587 0.93878 0.96887 0.89915 0.90513 1.22375 0.99778 0.96247 1.01280 1.20325 0.99782 0.97002 0.97523 1.20499 0.95736 1.01541 0.96290 1.20889 0.95166 0.96034 0.98800 0.92549 1.21831 1.00765 1.00207 0.96779 1.21342 1.01765 0.95036 0.95926 1.21881 0.98512 0.99804 0.93760 0.93639 0.92297 0.94867 0.90995 0.94148 0.93247 0.95484 0.94101 0.91790 0.92726 0.90037 0.93818 0.94144 0.91956 0.92043 0.92110 0.92676 0.92066 0.92402 0.90961 0.92810 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 9.33 71.98 0.67 -4.73 16 2 C -0.12 -5.68 4.59 30.59 0.14 -5.54 16 3 C 0.22 10.83 2.25 44.17 0.10 10.93 16 4 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 5 C -0.54 -28.15 6.33 25.60 0.16 -27.99 16 6 H 0.07 3.60 4.19 -2.91 -0.01 3.59 16 7 C 0.02 1.13 5.28 84.65 0.45 1.58 16 8 N -0.91 -51.62 10.91 21.45 0.23 -51.39 16 9 Si 0.94 43.17 29.54 68.60 2.03 45.20 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.54 -22.55 4.25 -878.87 -3.73 -26.29 16 14 C 0.04 1.55 8.15 127.69 1.04 2.59 16 15 C 0.09 3.08 0.56 44.46 0.03 3.11 16 16 H 0.08 3.00 2.83 -2.39 -0.01 2.99 16 17 C -0.16 -5.75 3.43 30.20 0.10 -5.65 16 18 C -0.11 -3.57 5.24 28.74 0.15 -3.42 16 19 C -0.10 -2.67 4.69 28.73 0.13 -2.53 16 20 C -0.09 -2.17 2.39 -11.19 -0.03 -2.20 16 21 H 0.06 1.56 6.98 -2.38 -0.02 1.54 16 22 C -0.14 -2.59 8.88 71.98 0.64 -1.95 16 23 C -0.10 -2.46 4.89 30.14 0.15 -2.31 16 24 C -0.10 -2.99 5.41 31.31 0.17 -2.82 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 2.25 6.48 -2.38 -0.02 2.24 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 3.91 5.62 -2.39 -0.01 3.89 16 29 H 0.04 1.90 4.76 -2.39 -0.01 1.89 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.03 1.09 4.62 -2.39 -0.01 1.08 16 32 H 0.04 1.67 8.06 -2.39 -0.02 1.65 16 33 H 0.06 2.13 6.85 -2.39 -0.02 2.11 16 34 H 0.05 1.82 6.97 -2.39 -0.02 1.80 16 35 H 0.08 3.56 3.22 -2.39 -0.01 3.55 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.47 6.38 -2.38 -0.02 1.46 16 38 H 0.06 1.51 7.47 -2.39 -0.02 1.49 16 39 H 0.06 1.45 7.98 -2.39 -0.02 1.43 16 40 H 0.06 1.03 8.09 -2.39 -0.02 1.02 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.37 6.63 -2.39 -0.02 1.36 16 44 H 0.07 1.47 7.67 -2.38 -0.02 1.45 16 45 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.06 1.63 6.58 -2.39 -0.02 1.62 16 Total: -1.00 -55.73 314.13 3.38 -52.35 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.95 Total: 21.04 kcal Atomic # 6 Polarization: -44.83 SS G_CDS: 3.91 Total: -40.92 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.50 Total: -77.68 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -55.73 3.38 -52.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704568099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.345 kcal (2) G-P(sol) polarization free energy of solvation -55.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds