Wall clock time and date at job start Mon Mar 30 2020 07:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46784 * 2 1 4 4 C 1.53002 * 109.47121 * 119.99563 * 2 1 3 5 5 H 1.08999 * 109.54719 * 304.22913 * 4 2 1 6 6 C 1.50747 * 109.61797 * 64.45945 * 4 2 1 7 7 C 1.54174 * 112.60904 * 212.92617 * 6 4 2 8 8 C 1.53822 * 111.96485 * 318.48552 * 7 6 4 9 9 C 1.50809 * 111.62630 * 319.03981 * 8 7 6 10 10 N 1.47636 * 108.04994 * 95.05803 * 9 8 7 11 11 C 1.46902 * 110.99979 * 150.34662 * 10 9 8 12 12 H 1.09003 * 109.47249 * 318.26065 * 11 10 9 13 13 C 1.53002 * 109.46986 * 78.25188 * 11 10 9 14 14 C 1.53000 * 109.47335 * 198.25129 * 11 10 9 15 15 C 1.50703 * 109.46799 * 62.57045 * 14 11 10 16 16 H 1.07999 * 120.00204 * 355.24380 * 15 14 11 17 17 C 1.37877 * 120.00076 * 175.23330 * 15 14 11 18 18 N 1.31515 * 119.99456 * 359.73080 * 17 15 14 19 19 Si 1.86800 * 120.00185 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47104 * 60.00451 * 19 17 15 21 21 H 1.48503 * 109.46980 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46919 * 300.00720 * 19 17 15 23 23 C 1.39776 * 114.76173 * 277.20092 * 10 9 8 24 24 H 1.08997 * 109.46918 * 178.73818 * 1 2 3 25 25 H 1.08994 * 109.47338 * 298.73831 * 1 2 3 26 26 H 1.09001 * 109.47052 * 58.73980 * 1 2 3 27 27 H 1.08997 * 109.47115 * 239.99998 * 2 1 3 28 28 H 1.09001 * 109.47143 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46946 * 299.99799 * 3 2 1 30 30 H 1.08995 * 109.47598 * 59.99667 * 3 2 1 31 31 H 1.09003 * 108.85628 * 333.72757 * 6 4 2 32 32 H 1.09002 * 108.85976 * 92.21675 * 6 4 2 33 33 H 1.08994 * 108.98337 * 79.12675 * 7 6 4 34 34 H 1.09005 * 108.98046 * 197.84635 * 7 6 4 35 35 H 1.08997 * 109.04970 * 79.59907 * 8 7 6 36 36 H 1.09011 * 109.04578 * 198.48888 * 8 7 6 37 37 H 1.09000 * 109.74551 * 335.42193 * 9 8 7 38 38 H 1.09002 * 109.74882 * 214.69681 * 9 8 7 39 39 H 1.08998 * 109.47192 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47427 * 300.00560 * 13 11 10 41 41 H 1.09006 * 109.47077 * 60.00081 * 13 11 10 42 42 H 1.08999 * 109.47247 * 302.57190 * 14 11 10 43 43 H 1.08993 * 109.47008 * 182.56871 * 14 11 10 44 44 H 0.97010 * 119.99396 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.02738 * 182.86453 * 23 10 9 46 46 H 1.09007 * 109.02036 * 301.68499 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6168 -0.2538 2.1385 6 6 1.6315 -2.1714 1.1988 7 6 1.3510 -2.7571 2.5970 8 6 2.3855 -2.2896 3.6349 9 6 3.7815 -2.2832 3.0643 10 7 4.0718 -0.9189 2.5807 11 6 5.5078 -0.6227 2.6711 12 1 5.8992 -1.0057 3.6136 13 6 6.2406 -1.2907 1.5058 14 6 5.7214 0.8909 2.6073 15 6 5.0526 1.5428 3.7901 16 1 4.4633 0.9483 4.4726 17 6 5.1931 2.8981 4.0010 18 7 5.9152 3.6209 3.1730 19 14 4.3647 3.7060 5.4675 20 1 4.8713 3.0933 6.7217 21 1 4.6679 5.1597 5.4684 22 1 2.8958 3.5071 5.3776 23 6 3.5809 -0.6337 1.3034 24 1 -0.3633 -1.0274 -0.0226 25 1 -0.3634 0.4941 0.9010 26 1 -0.3633 0.5333 -0.8785 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7310 -2.2627 0.5915 32 1 2.4308 -2.7465 0.7314 33 1 0.3582 -2.4439 2.9200 34 1 1.3757 -3.8453 2.5371 35 1 2.1304 -1.2818 3.9625 36 1 2.3554 -2.9598 4.4941 37 1 3.8438 -2.9887 2.2357 38 1 4.4971 -2.5595 3.8387 39 1 7.3060 -1.0706 1.5725 40 1 6.0884 -2.3691 1.5511 41 1 5.8492 -0.9079 0.5632 42 1 5.2895 1.2804 1.6855 43 1 6.7892 1.1083 2.6284 44 1 6.0138 4.5746 3.3212 45 1 3.8898 0.3725 1.0205 46 1 4.0023 -1.3458 0.5937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705936484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:39 Heat of formation + Delta-G solvation = -35.860981 kcal Electronic energy + Delta-G solvation = -20810.379281 eV Core-core repulsion = 18119.324361 eV Total energy + Delta-G solvation = -2691.054920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.01834 -37.73315 -35.79450 -34.59099 -31.94970 -31.40806 -29.21905 -28.36310 -26.49308 -25.75642 -25.04108 -22.90351 -20.99451 -20.32358 -20.03422 -18.30979 -17.22095 -16.61205 -16.24684 -15.77937 -15.35078 -15.19813 -15.08516 -14.73996 -14.41441 -14.08114 -13.62090 -13.48752 -13.27800 -13.19255 -13.02125 -12.69865 -12.68608 -12.53254 -12.47220 -12.30695 -12.20842 -11.93553 -11.81210 -11.59142 -11.40359 -11.10516 -11.04542 -11.00319 -10.89665 -10.69106 -10.44163 -8.67776 -8.07362 -6.11036 1.40745 1.43280 1.50560 2.48119 3.16632 3.30230 3.84975 3.89556 4.03635 4.19320 4.20169 4.28444 4.36390 4.41652 4.43799 4.56296 4.60857 4.66245 4.74034 4.80499 4.85103 4.87408 4.93064 4.98210 5.06402 5.07584 5.11885 5.14789 5.19060 5.24074 5.27276 5.35657 5.37362 5.44775 5.49448 5.55262 5.60160 5.69480 5.72795 5.76488 5.93445 6.40601 6.65437 6.92251 7.02934 7.54146 9.04510 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.007760 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.529667 B = 3607.218431 C = 4021.371380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.147 4.147 4 C -0.074 4.074 5 H 0.057 0.943 6 C -0.112 4.112 7 C -0.109 4.109 8 C -0.116 4.116 9 C 0.069 3.931 10 N -0.545 5.545 11 C 0.098 3.902 12 H 0.062 0.938 13 C -0.170 4.170 14 C 0.039 3.961 15 C -0.493 4.493 16 H 0.058 0.942 17 C -0.004 4.004 18 N -0.940 5.940 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.082 3.918 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.048 0.952 42 H -0.009 1.009 43 H -0.010 1.010 44 H 0.257 0.743 45 H 0.055 0.945 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 -13.244 -5.185 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 C -0.204 4.204 4 C -0.093 4.093 5 H 0.076 0.924 6 C -0.149 4.149 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.058 4.058 10 N -0.268 5.268 11 C -0.010 4.010 12 H 0.081 0.919 13 C -0.229 4.229 14 C 0.001 3.999 15 C -0.531 4.531 16 H 0.076 0.924 17 C -0.200 4.200 18 N -0.582 5.582 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.047 4.047 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -10.103 -12.795 -4.912 17.027 hybrid contribution 0.552 0.660 0.235 0.892 sum -9.552 -12.135 -4.677 16.136 Atomic orbital electron populations 1.21836 0.93851 1.02367 1.01668 1.21065 0.96605 0.94950 0.97603 1.21878 1.00347 0.97103 1.01064 1.21014 0.94002 0.96432 0.97820 0.92444 1.21504 1.01601 0.94307 0.97521 1.21855 0.98390 1.00312 0.94079 1.21393 0.94260 1.01329 0.98436 1.21804 0.97391 0.87897 0.98692 1.58689 1.14584 1.25494 1.28013 1.21638 0.86374 0.96203 0.96757 0.91944 1.22362 1.00812 1.00308 0.99424 1.19034 0.94274 0.91033 0.95516 1.21431 1.28901 0.92779 1.10026 0.92398 1.25812 0.96540 0.98464 0.99178 1.70093 1.42298 1.06585 1.39254 0.85707 0.79122 0.77033 0.80370 1.19533 1.21393 1.19875 1.21063 0.95130 0.99736 0.88774 0.91094 0.93568 0.91938 0.90841 0.94266 0.91801 0.94420 0.90335 0.92936 0.92011 0.91023 0.93147 0.91118 0.93846 0.91769 0.92671 0.91891 0.93273 0.99039 0.99135 0.93421 0.92678 0.97006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.96 71.98 0.65 -2.36 16 2 C -0.08 -2.20 2.46 -10.79 -0.03 -2.23 16 3 C -0.15 -4.65 8.80 71.98 0.63 -4.02 16 4 C -0.07 -2.18 1.49 -11.04 -0.02 -2.20 16 5 H 0.06 1.99 7.11 -2.39 -0.02 1.98 16 6 C -0.11 -2.61 4.76 30.26 0.14 -2.47 16 7 C -0.11 -2.40 5.91 31.27 0.18 -2.21 16 8 C -0.12 -3.14 5.41 30.16 0.16 -2.98 16 9 C 0.07 2.07 4.88 85.45 0.42 2.48 16 10 N -0.54 -20.50 3.45 -887.86 -3.07 -23.57 16 11 C 0.10 4.07 2.23 44.92 0.10 4.18 16 12 H 0.06 2.62 7.57 -2.39 -0.02 2.61 16 13 C -0.17 -5.90 8.41 71.98 0.61 -5.29 16 14 C 0.04 2.05 4.37 29.85 0.13 2.18 16 15 C -0.49 -28.35 8.80 25.60 0.23 -28.12 16 16 H 0.06 3.30 7.68 -2.91 -0.02 3.28 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 18 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 19 Si 0.95 46.25 29.54 68.60 2.03 48.28 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 23 C 0.08 2.93 3.24 88.07 0.29 3.21 16 24 H 0.07 1.27 6.26 -2.39 -0.01 1.26 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 1.43 6.00 -2.39 -0.01 1.42 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.54 5.74 -2.39 -0.01 1.53 16 32 H 0.05 1.24 6.57 -2.39 -0.02 1.22 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.67 7.26 -2.39 -0.02 1.65 16 36 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.04 1.19 6.66 -2.39 -0.02 1.17 16 38 H 0.06 1.91 7.47 -2.39 -0.02 1.89 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.86 7.82 -2.39 -0.02 1.84 16 41 H 0.05 1.73 6.54 -2.38 -0.02 1.71 16 42 H -0.01 -0.49 6.35 -2.39 -0.02 -0.51 16 43 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 44 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 45 H 0.06 2.36 3.40 -2.39 -0.01 2.35 16 46 H 0.01 0.41 6.01 -2.38 -0.01 0.39 16 Total: -1.00 -63.74 330.96 4.11 -59.63 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.92 Total: 13.47 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 3.95 Total: -39.62 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.78 Total: -81.75 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -63.74 4.11 -59.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705936484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.766 kcal (2) G-P(sol) polarization free energy of solvation -63.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds