Wall clock time and date at job start Mon Mar 30 2020 07:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 C 1.52994 * 109.47343 * 120.00309 * 2 1 3 5 5 H 1.09003 * 108.98524 * 297.03624 * 4 2 1 6 6 C 1.54498 * 109.05550 * 178.08004 * 4 2 1 7 7 C 1.50464 * 108.84522 * 162.25032 * 6 4 2 8 8 C 1.54292 * 113.03056 * 92.16265 * 7 6 4 9 9 C 1.54076 * 112.28624 * 318.30255 * 8 7 6 10 10 N 1.44373 * 111.88743 * 318.91077 * 9 8 7 11 11 C 1.46903 * 110.94697 * 219.37739 * 10 9 8 12 12 H 1.08993 * 109.47411 * 52.89256 * 11 10 9 13 13 C 1.52998 * 109.46944 * 292.88817 * 11 10 9 14 14 C 1.53004 * 109.46687 * 172.89256 * 11 10 9 15 15 C 1.50693 * 109.47024 * 298.18622 * 14 11 10 16 16 H 1.08000 * 120.00216 * 354.98456 * 15 14 11 17 17 C 1.37882 * 120.00321 * 174.98242 * 15 14 11 18 18 N 1.31520 * 119.99313 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47035 * 90.00133 * 19 17 15 21 21 H 1.48507 * 109.46664 * 209.99977 * 19 17 15 22 22 H 1.48496 * 109.47047 * 329.99915 * 19 17 15 23 23 C 1.45866 * 109.05197 * 55.98574 * 4 2 1 24 24 H 1.09002 * 109.46933 * 59.99605 * 1 2 3 25 25 H 1.08994 * 109.46799 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46740 * 299.99936 * 1 2 3 27 27 H 1.09004 * 109.46810 * 240.00605 * 2 1 3 28 28 H 1.09006 * 109.47378 * 186.74527 * 3 2 1 29 29 H 1.08993 * 109.47620 * 306.74962 * 3 2 1 30 30 H 1.09004 * 109.46961 * 66.74886 * 3 2 1 31 31 H 1.08999 * 109.57487 * 282.05926 * 6 4 2 32 32 H 1.08994 * 109.57763 * 42.31098 * 6 4 2 33 33 H 1.08994 * 108.77084 * 213.07351 * 7 6 4 34 34 H 1.08997 * 108.77172 * 331.36572 * 7 6 4 35 35 H 1.09002 * 108.92030 * 79.02343 * 8 7 6 36 36 H 1.08998 * 108.92116 * 197.58103 * 8 7 6 37 37 H 1.09004 * 108.97744 * 79.55684 * 9 8 7 38 38 H 1.09000 * 108.97483 * 198.35282 * 9 8 7 39 39 H 1.09007 * 109.47487 * 300.00555 * 13 11 10 40 40 H 1.09005 * 109.47076 * 60.00427 * 13 11 10 41 41 H 1.09001 * 109.47090 * 180.02562 * 13 11 10 42 42 H 1.08993 * 109.47465 * 58.18962 * 14 11 10 43 43 H 1.09002 * 109.46491 * 178.19167 * 14 11 10 44 44 H 0.96999 * 119.99482 * 179.97438 * 18 17 15 45 45 H 1.09002 * 108.79943 * 302.75546 * 23 4 2 46 46 H 1.09000 * 108.79534 * 61.09819 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.7166 -0.1715 2.1330 6 6 3.5843 -0.7581 1.2151 7 6 4.0939 -1.0568 2.5990 8 6 4.3093 -2.5638 2.8507 9 6 3.1700 -3.4222 2.2684 10 7 1.8759 -2.8222 2.4917 11 6 0.8755 -3.8428 2.8317 12 1 1.2401 -4.4464 3.6628 13 6 0.6306 -4.7412 1.6177 14 6 -0.4335 -3.1599 3.2331 15 6 -0.2022 -2.3096 4.4556 16 1 0.7582 -2.3238 4.9494 17 6 -1.2165 -1.5134 4.9437 18 7 -2.3862 -1.4964 4.3425 19 14 -0.9295 -0.4589 6.4586 20 1 -0.4194 0.8730 6.0452 21 1 -2.2082 -0.2925 7.1953 22 1 0.0671 -1.1190 7.3396 23 6 1.4717 -2.0640 1.2891 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8901 28 1 3.1234 1.4449 -0.1207 29 1 1.5815 1.9900 -0.8233 30 1 1.7787 1.9203 0.9442 31 1 3.9160 -1.5365 0.5279 32 1 3.9655 0.2078 0.8842 33 1 5.0416 -0.5383 2.7433 34 1 3.3746 -0.6808 3.3264 35 1 5.2504 -2.8677 2.3924 36 1 4.3690 -2.7377 3.9251 37 1 3.3271 -3.5395 1.1961 38 1 3.1906 -4.4051 2.7391 39 1 0.2660 -4.1375 0.7865 40 1 1.5632 -5.2277 1.3317 41 1 -0.1120 -5.4982 1.8698 42 1 -0.7814 -2.5310 2.4137 43 1 -1.1854 -3.9174 3.4544 44 1 -3.0999 -0.9366 4.6861 45 1 0.3846 -1.9859 1.2721 46 1 1.7978 -2.6099 0.4038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705936488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:53 Heat of formation + Delta-G solvation = -22.288479 kcal Electronic energy + Delta-G solvation = -20938.456668 eV Core-core repulsion = 18247.990295 eV Total energy + Delta-G solvation = -2690.466373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.56427 -36.36511 -34.36336 -32.52200 -30.34228 -30.26785 -27.42974 -27.12301 -25.26997 -24.17705 -23.05547 -21.47624 -19.52288 -19.34819 -18.42943 -16.12993 -15.94850 -15.03322 -14.50968 -14.29165 -14.03898 -13.74112 -13.59787 -13.46689 -12.64673 -12.42166 -12.19113 -12.11904 -11.80761 -11.70091 -11.58004 -11.46614 -11.26047 -10.98064 -10.93032 -10.65238 -10.45944 -10.42002 -10.36827 -10.14119 -10.04347 -9.87643 -9.66008 -9.43628 -9.07161 -8.91400 -8.20473 -7.37536 -5.84481 -3.81005 3.41464 3.47451 3.51690 4.55323 4.60958 5.05472 5.20609 5.29267 5.37115 5.44237 5.45899 5.53649 5.72611 5.75627 5.79912 5.89875 5.93432 5.94912 5.99579 6.02121 6.08321 6.12543 6.16754 6.19358 6.25943 6.29106 6.43191 6.47392 6.50449 6.54062 6.63479 6.65506 6.70446 6.76737 6.87069 6.94068 7.04793 7.06381 7.61967 7.78788 8.01932 8.15146 8.19297 8.63814 9.24346 9.79910 11.27521 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.008675 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.109348 B = 3226.761856 C = 3639.900337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.076 4.076 5 H 0.083 0.917 6 C -0.109 4.109 7 C -0.109 4.109 8 C -0.106 4.106 9 C 0.056 3.944 10 N -0.499 5.499 11 C 0.086 3.914 12 H 0.067 0.933 13 C -0.182 4.182 14 C 0.029 3.971 15 C -0.483 4.483 16 H 0.059 0.941 17 C 0.051 3.949 18 N -0.904 5.904 19 Si 0.886 3.114 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.060 3.940 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.023 0.977 43 H 0.013 0.987 44 H 0.256 0.744 45 H 0.087 0.913 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 0.473 -8.626 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.095 4.095 5 H 0.101 0.899 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.074 4.074 10 N -0.221 5.221 11 C -0.022 4.022 12 H 0.085 0.915 13 C -0.241 4.241 14 C -0.008 4.008 15 C -0.521 4.521 16 H 0.078 0.922 17 C -0.148 4.148 18 N -0.545 5.545 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.201 1.201 23 C -0.067 4.067 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.306 0.869 -8.180 13.187 hybrid contribution 0.013 0.030 0.156 0.159 sum 10.319 0.899 -8.024 13.103 Atomic orbital electron populations 1.21917 0.95035 1.02248 1.01486 1.21131 0.95923 0.95792 0.98024 1.21875 1.00422 0.96340 1.01567 1.20226 0.94249 0.96985 0.98026 0.89899 1.21435 0.95705 1.00393 0.97134 1.21153 1.00018 0.95698 0.97782 1.21908 0.96472 0.95350 1.00672 1.21904 0.91160 0.96476 0.97821 1.61659 1.00739 1.24970 1.34772 1.22018 0.95197 0.90671 0.94295 0.91454 1.22569 1.00311 1.00619 1.00639 1.19220 0.89394 0.95136 0.97006 1.21123 0.97553 1.23112 1.10345 0.92236 1.24969 0.95381 0.97343 0.97078 1.69965 1.03063 1.40748 1.40736 0.86683 0.77117 0.81033 0.83654 1.20962 1.21741 1.20103 1.21084 1.01999 0.93800 0.89778 0.93642 0.92206 0.91977 0.92195 0.92873 0.93362 0.92547 0.93039 0.92361 0.93940 0.90898 0.93487 0.92378 0.95444 0.92813 0.93022 0.94322 0.92752 0.95853 0.96849 0.93457 0.89511 0.96570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.67 37.16 0.32 -1.98 16 2 C -0.09 -1.27 2.48 -90.62 -0.22 -1.49 16 3 C -0.14 -1.82 8.76 37.16 0.33 -1.50 16 4 C -0.08 -1.23 1.56 -93.21 -0.14 -1.37 16 5 H 0.08 1.59 7.59 -51.93 -0.39 1.20 16 6 C -0.11 -1.55 4.89 -27.21 -0.13 -1.68 16 7 C -0.11 -1.62 5.42 -27.32 -0.15 -1.77 16 8 C -0.11 -1.55 6.14 -25.49 -0.16 -1.70 16 9 C 0.06 0.90 4.17 -4.61 -0.02 0.88 16 10 N -0.50 -9.43 3.83 -231.45 -0.89 -10.32 16 11 C 0.09 1.75 2.11 -67.71 -0.14 1.61 16 12 H 0.07 1.40 7.85 -51.93 -0.41 1.00 16 13 C -0.18 -3.16 8.59 37.16 0.32 -2.84 16 14 C 0.03 0.74 4.35 -27.88 -0.12 0.62 16 15 C -0.48 -13.38 8.75 -34.44 -0.30 -13.68 16 16 H 0.06 1.67 7.75 -52.49 -0.41 1.26 16 17 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.06 1.07 2.40 -6.70 -0.02 1.06 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.98 6.28 -51.93 -0.33 0.65 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.61 6.45 -51.93 -0.33 0.27 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 32 H 0.06 0.75 5.92 -51.93 -0.31 0.44 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.27 7.38 -51.93 -0.38 0.89 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.42 6.51 -51.93 -0.34 0.08 16 38 H 0.05 0.85 7.27 -51.93 -0.38 0.47 16 39 H 0.05 0.89 6.76 -51.93 -0.35 0.54 16 40 H 0.04 0.60 7.33 -51.93 -0.38 0.22 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.62 6.13 -51.93 -0.32 0.30 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.09 1.75 3.28 -51.93 -0.17 1.58 16 46 H 0.02 0.27 6.87 -51.93 -0.36 -0.08 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -28.53 331.95 -9.29 -37.82 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.59 Total: -0.87 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -0.54 Total: -22.49 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.15 Total: -36.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.53 -9.29 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705936488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.534 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds