Wall clock time and date at job start Mon Mar 30 2020 07:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 C 1.52994 * 109.47343 * 120.00309 * 2 1 3 5 5 H 1.09003 * 108.98524 * 297.03624 * 4 2 1 6 6 C 1.54498 * 109.05550 * 178.08004 * 4 2 1 7 7 C 1.50464 * 108.84522 * 162.25032 * 6 4 2 8 8 C 1.54292 * 113.03056 * 92.16265 * 7 6 4 9 9 C 1.54076 * 112.28624 * 318.30255 * 8 7 6 10 10 N 1.44373 * 111.88743 * 318.91077 * 9 8 7 11 11 C 1.46903 * 110.94697 * 219.37739 * 10 9 8 12 12 H 1.08993 * 109.47411 * 52.89256 * 11 10 9 13 13 C 1.52998 * 109.46944 * 292.88817 * 11 10 9 14 14 C 1.53004 * 109.46687 * 172.89256 * 11 10 9 15 15 C 1.50693 * 109.47024 * 298.18622 * 14 11 10 16 16 H 1.08000 * 120.00216 * 354.98456 * 15 14 11 17 17 C 1.37882 * 120.00321 * 174.98242 * 15 14 11 18 18 N 1.31520 * 119.99313 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00268 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47035 * 90.00133 * 19 17 15 21 21 H 1.48507 * 109.46664 * 209.99977 * 19 17 15 22 22 H 1.48496 * 109.47047 * 329.99915 * 19 17 15 23 23 C 1.45866 * 109.05197 * 55.98574 * 4 2 1 24 24 H 1.09002 * 109.46933 * 59.99605 * 1 2 3 25 25 H 1.08994 * 109.46799 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46740 * 299.99936 * 1 2 3 27 27 H 1.09004 * 109.46810 * 240.00605 * 2 1 3 28 28 H 1.09006 * 109.47378 * 186.74527 * 3 2 1 29 29 H 1.08993 * 109.47620 * 306.74962 * 3 2 1 30 30 H 1.09004 * 109.46961 * 66.74886 * 3 2 1 31 31 H 1.08999 * 109.57487 * 282.05926 * 6 4 2 32 32 H 1.08994 * 109.57763 * 42.31098 * 6 4 2 33 33 H 1.08994 * 108.77084 * 213.07351 * 7 6 4 34 34 H 1.08997 * 108.77172 * 331.36572 * 7 6 4 35 35 H 1.09002 * 108.92030 * 79.02343 * 8 7 6 36 36 H 1.08998 * 108.92116 * 197.58103 * 8 7 6 37 37 H 1.09004 * 108.97744 * 79.55684 * 9 8 7 38 38 H 1.09000 * 108.97483 * 198.35282 * 9 8 7 39 39 H 1.09007 * 109.47487 * 300.00555 * 13 11 10 40 40 H 1.09005 * 109.47076 * 60.00427 * 13 11 10 41 41 H 1.09001 * 109.47090 * 180.02562 * 13 11 10 42 42 H 1.08993 * 109.47465 * 58.18962 * 14 11 10 43 43 H 1.09002 * 109.46491 * 178.19167 * 14 11 10 44 44 H 0.96999 * 119.99482 * 179.97438 * 18 17 15 45 45 H 1.09002 * 108.79943 * 302.75546 * 23 4 2 46 46 H 1.09000 * 108.79534 * 61.09819 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.7166 -0.1715 2.1330 6 6 3.5843 -0.7581 1.2151 7 6 4.0939 -1.0568 2.5990 8 6 4.3093 -2.5638 2.8507 9 6 3.1700 -3.4222 2.2684 10 7 1.8759 -2.8222 2.4917 11 6 0.8755 -3.8428 2.8317 12 1 1.2401 -4.4464 3.6628 13 6 0.6306 -4.7412 1.6177 14 6 -0.4335 -3.1599 3.2331 15 6 -0.2022 -2.3096 4.4556 16 1 0.7582 -2.3238 4.9494 17 6 -1.2165 -1.5134 4.9437 18 7 -2.3862 -1.4964 4.3425 19 14 -0.9295 -0.4589 6.4586 20 1 -0.4194 0.8730 6.0452 21 1 -2.2082 -0.2925 7.1953 22 1 0.0671 -1.1190 7.3396 23 6 1.4717 -2.0640 1.2891 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8934 -0.5138 -0.8901 28 1 3.1234 1.4449 -0.1207 29 1 1.5815 1.9900 -0.8233 30 1 1.7787 1.9203 0.9442 31 1 3.9160 -1.5365 0.5279 32 1 3.9655 0.2078 0.8842 33 1 5.0416 -0.5383 2.7433 34 1 3.3746 -0.6808 3.3264 35 1 5.2504 -2.8677 2.3924 36 1 4.3690 -2.7377 3.9251 37 1 3.3271 -3.5395 1.1961 38 1 3.1906 -4.4051 2.7391 39 1 0.2660 -4.1375 0.7865 40 1 1.5632 -5.2277 1.3317 41 1 -0.1120 -5.4982 1.8698 42 1 -0.7814 -2.5310 2.4137 43 1 -1.1854 -3.9174 3.4544 44 1 -3.0999 -0.9366 4.6861 45 1 0.3846 -1.9859 1.2721 46 1 1.7978 -2.6099 0.4038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705936488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:53 Heat of formation + Delta-G solvation = -37.348179 kcal Electronic energy + Delta-G solvation = -20939.109706 eV Core-core repulsion = 18247.990295 eV Total energy + Delta-G solvation = -2691.119410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92907 -37.75893 -35.75503 -34.53343 -31.88358 -31.56721 -29.18523 -28.43816 -26.61586 -25.50089 -24.93490 -22.91755 -20.87889 -20.59445 -19.88324 -18.32168 -17.36992 -16.62044 -16.19510 -15.66910 -15.34574 -15.09773 -14.88232 -14.79084 -14.30378 -14.00910 -13.58602 -13.46593 -13.37880 -13.08217 -13.03649 -12.87535 -12.76315 -12.58346 -12.46857 -12.29168 -12.13768 -11.98088 -11.67025 -11.54141 -11.38232 -11.17016 -11.07613 -10.97146 -10.88735 -10.68308 -10.41428 -8.81712 -8.07465 -6.10277 1.39690 1.40597 1.50878 2.47624 3.14631 3.29760 3.81987 3.99396 4.08740 4.20050 4.23776 4.27321 4.29465 4.42327 4.48985 4.57754 4.64429 4.68369 4.72600 4.80795 4.84547 4.88503 4.94571 5.00273 5.03123 5.05137 5.15178 5.15751 5.20995 5.25073 5.33582 5.34724 5.39940 5.45045 5.52052 5.54659 5.66174 5.70227 5.73615 5.78274 5.93646 6.38435 6.56474 6.71765 7.02350 7.54312 9.04398 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.008675 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.109348 B = 3226.761856 C = 3639.900337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.074 4.074 5 H 0.041 0.959 6 C -0.100 4.100 7 C -0.108 4.108 8 C -0.104 4.104 9 C 0.054 3.946 10 N -0.519 5.519 11 C 0.093 3.907 12 H 0.061 0.939 13 C -0.171 4.171 14 C 0.037 3.963 15 C -0.488 4.488 16 H 0.053 0.947 17 C -0.001 4.001 18 N -0.938 5.938 19 Si 0.948 3.052 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.268 1.268 23 C 0.068 3.932 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.001 0.999 43 H -0.013 1.013 44 H 0.256 0.744 45 H 0.053 0.947 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.019 0.629 -9.770 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.198 4.198 4 C -0.093 4.093 5 H 0.059 0.941 6 C -0.137 4.137 7 C -0.146 4.146 8 C -0.142 4.142 9 C -0.075 4.075 10 N -0.242 5.242 11 C -0.015 4.015 12 H 0.079 0.921 13 C -0.230 4.230 14 C 0.000 4.000 15 C -0.527 4.527 16 H 0.071 0.929 17 C -0.197 4.197 18 N -0.580 5.580 19 Si 0.775 3.225 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.059 4.059 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.019 0.981 43 H 0.005 0.995 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.898 1.019 -9.321 15.946 hybrid contribution -0.812 -0.035 0.512 0.961 sum 12.086 0.985 -8.809 14.988 Atomic orbital electron populations 1.21885 0.96531 1.01025 1.00973 1.21117 0.94582 0.97023 0.97641 1.21840 1.01663 0.94944 1.01338 1.20166 0.96208 0.95553 0.97336 0.94051 1.21379 0.93448 1.01929 0.96978 1.21140 1.00081 0.96072 0.97282 1.21914 0.97122 0.94900 1.00258 1.21983 0.89788 0.96790 0.98918 1.61594 1.01673 1.25071 1.35861 1.21724 0.93192 0.90983 0.95590 0.92061 1.22418 1.01689 0.99972 0.98925 1.19061 0.91491 0.93994 0.95447 1.21382 0.97069 1.23218 1.11011 0.92851 1.25742 0.95206 0.98739 1.00017 1.70089 1.03881 1.41728 1.42308 0.85697 0.77207 0.79345 0.80276 1.20590 1.21257 1.19242 1.21012 1.00088 0.94833 0.89951 0.91404 0.93855 0.95095 0.90157 0.91002 0.91845 0.94186 0.91606 0.90496 0.91762 0.94529 0.90461 0.93457 0.93896 0.92477 0.93303 0.91627 0.92656 0.98097 0.99512 0.93480 0.92832 0.94918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 8.67 71.99 0.62 -3.98 16 2 C -0.08 -2.29 2.48 -10.79 -0.03 -2.32 16 3 C -0.14 -3.26 8.76 71.98 0.63 -2.63 16 4 C -0.07 -2.35 1.56 -12.47 -0.02 -2.37 16 5 H 0.04 1.66 7.59 -2.39 -0.02 1.64 16 6 C -0.10 -2.56 4.89 30.28 0.15 -2.42 16 7 C -0.11 -3.00 5.42 30.21 0.16 -2.84 16 8 C -0.10 -2.78 6.14 31.40 0.19 -2.58 16 9 C 0.05 1.61 4.17 87.14 0.36 1.98 16 10 N -0.52 -19.55 3.83 -886.18 -3.39 -22.94 16 11 C 0.09 3.85 2.11 44.92 0.09 3.95 16 12 H 0.06 2.57 7.85 -2.39 -0.02 2.56 16 13 C -0.17 -5.80 8.59 71.98 0.62 -5.18 16 14 C 0.04 1.95 4.35 29.85 0.13 2.08 16 15 C -0.49 -28.05 8.75 25.60 0.22 -27.82 16 16 H 0.05 3.07 7.75 -2.91 -0.02 3.05 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 19 Si 0.95 46.45 29.54 68.60 2.03 48.48 16 20 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 23 C 0.07 2.42 2.40 83.94 0.20 2.62 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.47 6.28 -2.39 -0.02 1.46 16 26 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.40 6.45 -2.38 -0.02 1.38 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.04 8.14 -2.38 -0.02 1.03 16 31 H 0.07 1.54 7.15 -2.39 -0.02 1.52 16 32 H 0.08 1.69 5.92 -2.39 -0.01 1.68 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.28 7.38 -2.39 -0.02 1.26 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.04 1.16 6.51 -2.38 -0.02 1.15 16 38 H 0.06 1.66 7.27 -2.39 -0.02 1.65 16 39 H 0.05 1.67 6.76 -2.38 -0.02 1.65 16 40 H 0.06 1.87 7.33 -2.38 -0.02 1.85 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.00 0.05 6.13 -2.39 -0.01 0.03 16 43 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.05 2.26 3.28 -2.39 -0.01 2.26 16 46 H 0.03 1.04 6.87 -2.39 -0.02 1.02 16 Total: -1.00 -63.75 331.95 3.64 -60.11 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.91 Total: 13.21 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 3.81 Total: -41.12 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -3.11 Total: -80.67 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -63.75 3.64 -60.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705936488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.764 kcal (2) G-P(sol) polarization free energy of solvation -63.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds