Wall clock time and date at job start Mon Mar 30 2020 07:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46751 * 2 1 4 4 C 1.52997 * 109.47418 * 239.99650 * 2 1 3 5 5 C 1.50697 * 109.47262 * 174.99679 * 4 2 1 6 6 H 1.08002 * 120.00469 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99946 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00067 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46871 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47198 * 119.99668 * 9 7 5 12 12 H 1.48505 * 109.46968 * 239.99680 * 9 7 5 13 13 N 1.46900 * 109.47370 * 119.99814 * 2 1 3 14 14 C 1.46903 * 111.00330 * 274.07530 * 13 2 1 15 15 H 1.09004 * 109.46586 * 345.65271 * 14 13 2 16 16 C 1.52995 * 109.47250 * 105.65276 * 14 13 2 17 17 C 1.53008 * 109.46918 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.46938 * 60.00046 * 17 16 14 19 19 C 1.53003 * 109.47131 * 180.02562 * 17 16 14 20 20 C 1.53001 * 109.46966 * 300.00239 * 17 16 14 21 21 C 1.52999 * 109.47024 * 59.99926 * 20 17 16 22 22 C 1.52993 * 109.47286 * 60.00056 * 21 20 17 23 23 C 1.53001 * 109.47024 * 179.97438 * 21 20 17 24 24 C 1.52991 * 109.47090 * 225.65761 * 14 13 2 25 25 H 1.09000 * 109.47207 * 61.24357 * 1 2 3 26 26 H 1.09001 * 109.46622 * 181.23376 * 1 2 3 27 27 H 1.08993 * 109.47487 * 301.23631 * 1 2 3 28 28 H 1.08996 * 109.47638 * 295.00516 * 4 2 1 29 29 H 1.09002 * 109.46838 * 55.00000 * 4 2 1 30 30 H 0.97004 * 120.00012 * 180.02562 * 8 7 5 31 31 H 1.00907 * 110.99818 * 38.02547 * 13 2 1 32 32 H 1.09002 * 109.47531 * 299.99663 * 16 14 13 33 33 H 1.08995 * 109.47279 * 60.00601 * 16 14 13 34 34 H 1.09004 * 109.46803 * 59.99728 * 19 17 16 35 35 H 1.08992 * 109.46803 * 179.97438 * 19 17 16 36 36 H 1.08992 * 109.47134 * 300.00106 * 19 17 16 37 37 H 1.09000 * 109.47227 * 180.02562 * 20 17 16 38 38 H 1.09004 * 109.46985 * 299.99715 * 20 17 16 39 39 H 1.09005 * 109.47306 * 59.99977 * 22 21 20 40 40 H 1.08997 * 109.47714 * 179.97438 * 22 21 20 41 41 H 1.09002 * 109.47514 * 300.00262 * 22 21 20 42 42 H 1.09004 * 109.46985 * 59.99789 * 23 21 20 43 43 H 1.08993 * 109.47366 * 180.02562 * 23 21 20 44 44 H 1.09000 * 109.47227 * 300.00206 * 23 21 20 45 45 H 1.08994 * 109.47135 * 299.99780 * 24 14 13 46 46 H 1.09001 * 109.47155 * 59.99377 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0791 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5765 -1.8370 -3.2999 9 14 6.0922 -1.0613 -2.4365 10 1 6.5838 -0.2917 -1.2655 11 1 6.6856 -2.4225 -2.4194 12 1 6.4871 -0.3649 -3.6873 13 7 2.0197 -0.6924 1.1994 14 6 2.1034 0.2278 2.3414 15 1 2.0298 1.2556 1.9859 16 6 0.9567 -0.0592 3.3128 17 6 1.0435 0.8998 4.5019 18 1 0.9697 1.9274 4.1460 19 6 -0.1028 0.6124 5.4736 20 6 2.3807 0.7033 5.2189 21 6 3.5274 0.9903 4.2475 22 6 3.4237 2.4326 3.7480 23 6 4.8646 0.7944 4.9647 24 6 3.4405 0.0308 3.0583 25 1 -0.3633 0.4944 -0.9009 26 1 -0.3632 -1.0275 0.0221 27 1 -0.3634 0.5329 0.8786 28 1 1.7517 -1.7715 -1.2056 29 1 1.6054 -0.2618 -2.1369 30 1 4.0609 -2.2438 -4.0353 31 1 1.4406 -1.4892 1.4188 32 1 0.0040 0.0813 2.8021 33 1 1.0303 -1.0869 3.6683 34 1 -0.0285 -0.4153 5.8294 35 1 -0.0407 1.2952 6.3209 36 1 -1.0556 0.7521 4.9630 37 1 2.4424 1.3861 6.0663 38 1 2.4546 -0.3244 5.5748 39 1 3.4856 3.1159 4.5951 40 1 4.2408 2.6373 3.0563 41 1 2.4710 2.5728 3.2372 42 1 4.9387 -0.2332 5.3209 43 1 5.6814 0.9992 4.2728 44 1 4.9262 1.4778 5.8116 45 1 3.5142 -0.9969 3.4138 46 1 4.2574 0.2352 2.3662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708266702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:19 Heat of formation + Delta-G solvation = -43.455062 kcal Electronic energy + Delta-G solvation = -20198.391340 eV Core-core repulsion = 17507.007116 eV Total energy + Delta-G solvation = -2691.384225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78335 -36.35842 -33.96409 -32.81073 -31.33795 -27.60208 -27.27035 -27.10472 -26.54780 -26.04290 -22.96756 -20.82236 -20.56518 -19.66720 -18.17438 -16.17911 -15.23387 -15.03813 -14.86217 -14.42602 -14.25713 -13.99518 -13.35540 -13.24451 -12.70460 -12.62026 -12.38688 -12.34821 -11.97558 -11.76435 -11.67467 -11.64763 -11.45852 -11.27003 -11.11895 -11.04436 -10.75113 -10.67001 -10.55163 -10.43306 -10.10202 -9.97135 -9.91505 -9.75921 -9.07566 -8.89183 -8.20042 -7.43586 -5.82189 -3.78973 3.41631 3.48830 3.54130 4.59441 4.61784 4.68049 4.81470 5.06362 5.11197 5.25191 5.32375 5.45821 5.55060 5.59088 5.63481 5.65223 5.73539 5.74975 5.82374 5.82738 5.88855 5.91129 5.95486 5.97880 6.02952 6.08980 6.13627 6.18082 6.22873 6.32489 6.40679 6.42819 6.51969 6.56717 6.65697 6.75434 6.80772 7.12235 7.67156 7.78545 8.13834 8.14793 8.28742 8.67790 9.26745 9.81922 11.30154 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.006081 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.347329 B = 4603.614153 C = 5569.543480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.482 4.482 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.661 5.661 14 C 0.088 3.912 15 H 0.066 0.934 16 C -0.137 4.137 17 C -0.091 4.091 18 H 0.070 0.930 19 C -0.146 4.146 20 C -0.099 4.099 21 C -0.066 4.066 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.092 4.092 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.255 0.745 31 H 0.331 0.669 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 6.080 17.495 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.521 4.521 6 H 0.077 0.923 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.289 5.289 14 C -0.022 4.022 15 H 0.084 0.916 16 C -0.176 4.176 17 C -0.110 4.110 18 H 0.088 0.912 19 C -0.203 4.203 20 C -0.137 4.137 21 C -0.067 4.067 22 C -0.200 4.200 23 C -0.196 4.196 24 C -0.131 4.131 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.031 6.051 17.146 18.624 hybrid contribution 0.039 0.037 0.061 0.082 sum -3.992 6.089 17.207 18.684 Atomic orbital electron populations 1.22633 0.99743 1.01005 1.00540 1.21886 0.89720 0.97812 0.92452 0.91989 1.19121 0.96235 0.95373 0.89809 1.21188 0.91921 1.32458 1.06545 0.92331 1.25007 0.97871 0.96055 0.96125 1.69978 1.34987 1.37269 1.12451 0.86602 0.86689 0.77517 0.77549 1.19866 1.21358 1.21495 1.60546 1.57005 1.08804 1.02563 1.21648 0.93451 0.96664 0.90430 0.91584 1.22351 0.99235 0.99474 0.96494 1.21140 0.94561 0.99859 0.95419 0.91171 1.21831 0.98174 1.01339 0.98998 1.21623 0.93642 1.01184 0.97208 1.20578 0.94589 0.95864 0.95662 1.21958 1.02180 0.95341 1.00570 1.21839 0.96793 1.01188 0.99830 1.21573 0.98082 0.98217 0.95196 0.92724 0.93165 0.94322 0.96587 0.96669 0.93495 0.85150 0.92358 0.91963 0.92890 0.93074 0.92989 0.92603 0.92195 0.93414 0.92611 0.92211 0.92861 0.92576 0.93237 0.92245 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.14 37.16 0.34 -2.72 16 2 C 0.09 1.84 2.48 -67.71 -0.17 1.67 16 3 H 0.06 1.30 7.34 -51.93 -0.38 0.92 16 4 C 0.03 0.83 4.65 -27.89 -0.13 0.70 16 5 C -0.48 -13.76 8.84 -34.44 -0.30 -14.07 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.85 13.29 55.43 0.74 -27.12 16 9 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.66 -12.27 5.84 -99.74 -0.58 -12.86 16 14 C 0.09 1.35 2.25 -67.72 -0.15 1.19 16 15 H 0.07 1.06 5.44 -51.93 -0.28 0.78 16 16 C -0.14 -1.73 4.36 -26.73 -0.12 -1.84 16 17 C -0.09 -0.99 2.45 -90.61 -0.22 -1.21 16 18 H 0.07 0.79 6.43 -51.93 -0.33 0.45 16 19 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 20 C -0.10 -1.06 4.01 -26.73 -0.11 -1.17 16 21 C -0.07 -0.80 0.77 -154.49 -0.12 -0.91 16 22 C -0.14 -1.69 7.78 37.15 0.29 -1.40 16 23 C -0.14 -1.55 8.47 37.16 0.31 -1.23 16 24 C -0.09 -1.37 4.34 -26.71 -0.12 -1.49 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.83 8.11 -51.93 -0.42 0.41 16 27 H 0.04 0.57 6.66 -51.93 -0.35 0.23 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.33 5.82 7.91 -39.29 -0.31 5.51 16 32 H 0.06 0.75 6.65 -51.93 -0.35 0.40 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -29.72 343.84 -8.91 -38.63 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.98 Total: 0.94 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -0.25 Total: -22.21 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.15 Total: -39.97 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.72 -8.91 -38.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708266702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.828 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds