Wall clock time and date at job start Mon Mar 30 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.46846 * 111.00692 * 299.21360 * 13 3 2 15 15 C 1.53029 * 109.52748 * 174.16185 * 14 13 3 16 16 C 1.53119 * 109.28004 * 59.17473 * 15 14 13 17 17 C 1.53115 * 109.16476 * 302.34574 * 16 15 14 18 18 H 1.08999 * 109.50501 * 297.72029 * 17 16 15 19 19 C 1.52998 * 109.50665 * 177.59059 * 17 16 15 20 20 C 1.52996 * 109.47469 * 300.20098 * 19 17 16 21 21 C 1.53000 * 109.46751 * 60.20058 * 19 17 16 22 22 C 1.53002 * 109.47117 * 180.19888 * 19 17 16 23 23 C 1.46848 * 111.00134 * 174.99991 * 13 3 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.45481 * 294.17657 * 14 13 3 31 31 H 1.08997 * 109.45845 * 54.14046 * 14 13 3 32 32 H 1.09008 * 109.50510 * 299.23635 * 15 14 13 33 33 H 1.08994 * 109.53853 * 179.13753 * 15 14 13 34 34 H 1.09003 * 109.52420 * 182.43846 * 16 15 14 35 35 H 1.08997 * 109.52311 * 62.25510 * 16 15 14 36 36 H 1.09005 * 109.47152 * 59.99660 * 20 19 17 37 37 H 1.08992 * 109.47440 * 179.97438 * 20 19 17 38 38 H 1.09002 * 109.46975 * 299.99879 * 20 19 17 39 39 H 1.08999 * 109.47262 * 59.99973 * 21 19 17 40 40 H 1.09003 * 109.47049 * 179.97438 * 21 19 17 41 41 H 1.08997 * 109.47213 * 300.00087 * 21 19 17 42 42 H 1.08993 * 109.47043 * 60.00092 * 22 19 17 43 43 H 1.09002 * 109.46816 * 180.02562 * 22 19 17 44 44 H 1.08999 * 109.47171 * 300.00195 * 22 19 17 45 45 H 1.09004 * 109.46321 * 305.85762 * 23 13 3 46 46 H 1.09000 * 109.46332 * 65.83235 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6515 2.0992 -1.2553 14 6 2.2355 1.4097 -2.4128 15 6 1.6949 2.0291 -3.7035 16 6 2.0526 3.5175 -3.7384 17 6 1.4735 4.2029 -2.4978 18 1 0.3866 4.1223 -2.5114 19 6 1.8773 5.6787 -2.4941 20 6 3.4031 5.7900 -2.4774 21 6 1.3299 6.3601 -3.7499 22 6 1.3024 6.3616 -1.2515 23 6 2.0207 3.5204 -1.2420 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 3.3204 1.5126 -2.3872 31 1 1.9701 0.3531 -2.3779 32 1 0.6114 1.9144 -3.7362 33 1 2.1400 1.5276 -4.5627 34 1 1.6321 3.9722 -4.6354 35 1 3.1366 3.6316 -3.7451 36 1 3.8126 5.3034 -3.3627 37 1 3.6907 6.8413 -2.4753 38 1 3.7930 5.3045 -1.5828 39 1 0.2429 6.2808 -3.7618 40 1 1.6172 7.4116 -3.7471 41 1 1.7394 5.8736 -4.6351 42 1 1.6923 5.8761 -0.3570 43 1 1.5897 7.4131 -1.2492 44 1 0.2154 6.2823 -1.2635 45 1 1.5992 3.9969 -0.3568 46 1 3.1065 3.6134 -1.2221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708548292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:54 Heat of formation + Delta-G solvation = -19.973556 kcal Electronic energy + Delta-G solvation = -20882.499397 eV Core-core repulsion = 18192.133407 eV Total energy + Delta-G solvation = -2690.365990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.44557 -36.79681 -33.92052 -31.96163 -31.01962 -29.09315 -27.49173 -27.08186 -26.71983 -23.51064 -22.93202 -21.93697 -20.32330 -18.94766 -17.87792 -16.57274 -15.80075 -14.73051 -14.51292 -14.21113 -14.02203 -13.61869 -13.40087 -13.35372 -12.81403 -12.65833 -12.46553 -12.32535 -11.84445 -11.70461 -11.60905 -11.53483 -11.34781 -11.14086 -11.02573 -10.87588 -10.63448 -10.41356 -10.23583 -10.20745 -9.97485 -9.77075 -9.50858 -9.50684 -9.31117 -9.12344 -8.54214 -7.04780 -6.09940 -4.09814 3.26690 3.37821 3.40192 4.39103 4.79698 4.99172 5.07659 5.18378 5.22545 5.48706 5.52904 5.55450 5.75288 5.83808 5.86524 5.95405 5.98528 5.99919 6.05662 6.06351 6.08745 6.15862 6.24089 6.27025 6.28041 6.34061 6.42058 6.48895 6.51387 6.55748 6.57999 6.64248 6.71064 6.80768 6.85212 6.89583 6.98020 7.05448 7.16046 7.30370 7.61457 8.18938 8.26641 8.48594 8.93137 9.54279 11.02953 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023277 B = 0.007265 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.618399 B = 3853.390679 C = 4236.005326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.526 5.526 14 C 0.058 3.942 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.072 4.072 18 H 0.068 0.932 19 C -0.063 4.063 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.142 4.142 23 C 0.067 3.933 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 6.886 -8.220 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.094 0.906 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.250 5.250 14 C -0.070 4.070 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.090 4.090 18 H 0.087 0.913 19 C -0.064 4.064 20 C -0.203 4.203 21 C -0.196 4.196 22 C -0.200 4.200 23 C -0.061 4.061 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.900 6.804 -8.143 13.850 hybrid contribution 0.581 -0.515 0.942 1.221 sum -8.320 6.290 -7.201 12.674 Atomic orbital electron populations 1.21731 0.97415 0.99254 1.01643 1.21959 0.94025 0.99482 1.00583 1.19687 0.94414 0.90397 0.88148 0.94565 1.21640 0.90718 1.38675 1.06931 0.90645 1.24987 0.94698 0.95405 0.97864 1.69917 1.08828 1.45266 1.29707 0.86863 0.80742 0.79824 0.80863 1.20613 1.22689 1.18881 1.62274 1.58082 1.01535 1.03102 1.21940 0.97707 0.97828 0.89530 1.21616 1.00870 0.95449 0.97492 1.21698 1.00703 0.95547 0.97255 1.21198 1.00071 0.92335 0.95437 0.91323 1.20506 0.95635 0.95181 0.95030 1.21991 0.94906 1.00775 1.02645 1.21896 1.00504 0.99651 0.97589 1.21912 1.00465 0.99582 0.97992 1.22007 0.99062 0.89084 0.95971 0.94897 0.91932 0.94008 0.93641 0.92205 0.92747 0.94100 0.91511 0.92175 0.92792 0.92783 0.92125 0.92637 0.93513 0.91678 0.93045 0.93296 0.92605 0.91938 0.93356 0.92986 0.91948 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.80 37.16 0.36 -2.27 16 2 C -0.12 -2.67 4.72 -26.73 -0.13 -2.80 16 3 C 0.18 4.21 1.34 -68.86 -0.09 4.12 16 4 H 0.04 0.90 7.14 -51.93 -0.37 0.52 16 5 C -0.54 -14.70 7.77 -34.44 -0.27 -14.97 16 6 H 0.08 2.24 6.08 -52.48 -0.32 1.92 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 9 Si 0.89 22.00 24.41 -169.99 -4.15 17.85 16 10 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.53 -10.58 4.10 -228.08 -0.93 -11.52 16 14 C 0.06 1.11 4.80 -3.84 -0.02 1.09 16 15 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 16 C -0.11 -1.66 4.57 -26.61 -0.12 -1.78 16 17 C -0.07 -1.07 1.71 -90.54 -0.16 -1.23 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.06 -0.83 0.57 -154.51 -0.09 -0.91 16 20 C -0.15 -2.01 7.77 37.16 0.29 -1.72 16 21 C -0.14 -1.56 8.13 37.16 0.30 -1.26 16 22 C -0.14 -1.82 8.12 37.16 0.30 -1.52 16 23 C 0.07 1.25 3.70 -3.83 -0.01 1.24 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.11 7.75 -51.93 -0.40 0.70 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.06 3.21 -51.93 -0.17 0.89 16 28 H 0.06 1.28 6.05 -51.93 -0.31 0.97 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.04 0.89 6.62 -51.93 -0.34 0.55 16 31 H 0.07 1.29 5.93 -51.93 -0.31 0.98 16 32 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.69 6.58 -51.93 -0.34 0.35 16 35 H 0.06 0.93 6.31 -51.93 -0.33 0.60 16 36 H 0.05 0.75 6.38 -51.93 -0.33 0.42 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 1.03 6.41 -51.93 -0.33 0.70 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.61 6.49 -51.93 -0.34 0.27 16 42 H 0.06 0.88 6.45 -51.93 -0.33 0.55 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.19 6.41 -51.93 -0.33 0.86 16 46 H 0.05 0.96 5.21 -51.93 -0.27 0.69 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -28.35 320.24 -7.62 -35.97 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.25 Total: 1.34 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 0.11 Total: -21.99 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.16 Total: -38.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.15 Total: 17.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.35 -7.62 -35.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708548292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.997 kcal (2) G-P(sol) polarization free energy of solvation -28.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds