Wall clock time and date at job start Mon Mar 30 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 H 1.09000 * 109.46977 * 56.02562 * 3 2 1 5 5 C 1.50701 * 109.47002 * 176.02085 * 3 2 1 6 6 H 1.07999 * 119.99873 * 120.00391 * 5 3 2 7 7 C 1.37879 * 120.00160 * 300.00360 * 5 3 2 8 8 N 1.31512 * 119.99800 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47283 * 90.00029 * 9 7 5 11 11 H 1.48504 * 109.46552 * 209.99817 * 9 7 5 12 12 H 1.48496 * 109.47214 * 329.99470 * 9 7 5 13 13 N 1.46894 * 109.47177 * 296.02418 * 3 2 1 14 14 C 1.46904 * 111.00105 * 295.47050 * 13 3 2 15 15 C 1.46901 * 111.00073 * 171.51740 * 13 3 2 16 16 H 1.09005 * 109.46971 * 57.13389 * 15 13 3 17 17 C 1.52998 * 109.47350 * 297.13671 * 15 13 3 18 18 C 1.53001 * 109.47569 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.46960 * 59.99808 * 18 17 15 20 20 C 1.53003 * 109.47271 * 299.99956 * 19 18 17 21 21 C 1.52992 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47112 * 300.00267 * 20 19 18 23 23 C 1.52998 * 109.46599 * 60.00278 * 20 19 18 24 24 H 1.09003 * 109.47499 * 175.26473 * 1 2 3 25 25 H 1.09001 * 109.47193 * 295.26525 * 1 2 3 26 26 H 1.09001 * 109.46983 * 55.26570 * 1 2 3 27 27 H 1.09000 * 109.46949 * 239.99708 * 2 1 3 28 28 H 1.08999 * 109.46915 * 120.00047 * 2 1 3 29 29 H 0.96998 * 119.99975 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46733 * 296.04971 * 14 13 3 31 31 H 1.08995 * 109.47016 * 56.04799 * 14 13 3 32 32 H 1.08996 * 109.47256 * 176.04756 * 14 13 3 33 33 H 1.09001 * 109.47104 * 59.99912 * 17 15 13 34 34 H 1.09005 * 109.46874 * 300.00347 * 17 15 13 35 35 H 1.09005 * 109.46853 * 299.99780 * 18 17 15 36 36 H 1.08998 * 109.47126 * 180.02562 * 18 17 15 37 37 H 1.08995 * 109.47377 * 60.00190 * 19 18 17 38 38 H 1.09002 * 109.46738 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47225 * 60.00261 * 21 20 19 40 40 H 1.09002 * 109.47173 * 179.97438 * 21 20 19 41 41 H 1.09005 * 109.47362 * 300.00154 * 21 20 19 42 42 H 1.09004 * 109.47096 * 60.00514 * 22 20 19 43 43 H 1.09002 * 109.47080 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47210 * 299.99806 * 22 20 19 45 45 H 1.08995 * 109.47292 * 60.00230 * 23 20 19 46 46 H 1.09002 * 109.46891 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6197 1.9764 0.8522 5 6 3.5438 1.4435 0.0986 6 1 4.1360 1.8928 -0.6849 7 6 4.1636 0.8710 1.1891 8 7 3.4425 0.3244 2.1434 9 14 6.0276 0.8731 1.3115 10 1 6.4762 2.1018 2.0146 11 1 6.4750 -0.3226 2.0701 12 1 6.6134 0.8415 -0.0527 13 7 1.6304 2.1066 -1.2445 14 6 2.2658 1.4783 -2.4105 15 6 1.9255 3.5449 -1.1955 16 1 2.9890 3.6913 -1.0065 17 6 1.1140 4.1941 -0.0726 18 6 1.4208 5.6921 -0.0219 19 6 1.0466 6.3349 -1.3589 20 6 1.8582 5.6858 -2.4818 21 6 1.4843 6.3290 -3.8187 22 6 3.3509 5.8919 -2.2169 23 6 1.5512 4.1878 -2.5324 24 1 -0.3634 -1.0242 -0.0848 25 1 -0.3633 0.4386 0.9294 26 1 -0.3633 0.5855 -0.8445 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8785 -0.0786 2.9103 30 1 3.3461 1.6116 -2.3512 31 1 2.0312 0.4140 -2.4225 32 1 1.8918 1.9432 -3.3226 33 1 1.3803 3.7358 0.8799 34 1 0.0504 4.0476 -0.2615 35 1 2.4843 5.8390 0.1668 36 1 0.8430 6.1545 0.7784 37 1 -0.0168 6.1881 -1.5476 38 1 1.2656 7.4021 -1.3229 39 1 1.7033 7.3961 -3.7823 40 1 2.0629 5.8669 -4.6186 41 1 0.4208 6.1825 -4.0076 42 1 3.6176 5.4338 -1.2644 43 1 3.9291 5.4290 -3.0167 44 1 3.5696 6.9591 -2.1808 45 1 0.4878 4.0409 -2.7212 46 1 2.1298 3.7252 -3.3321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708572493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:39 Heat of formation + Delta-G solvation = -24.522053 kcal Electronic energy + Delta-G solvation = -20923.068164 eV Core-core repulsion = 18232.504936 eV Total energy + Delta-G solvation = -2690.563228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.48139 -36.63896 -33.02557 -32.23802 -31.23359 -28.71423 -27.15588 -27.05449 -25.80593 -24.51826 -22.82590 -21.17147 -20.26844 -18.69756 -18.04567 -16.17681 -15.57451 -14.84817 -14.49388 -14.08234 -13.87772 -13.65333 -13.35541 -12.95164 -12.67087 -12.50573 -12.25455 -12.07615 -11.77422 -11.62869 -11.37408 -11.21193 -11.05596 -10.89353 -10.79966 -10.67991 -10.57858 -10.52193 -10.38616 -10.16798 -9.83612 -9.65522 -9.58054 -9.36336 -9.26644 -8.89709 -8.28627 -6.98888 -5.94167 -4.06971 3.27388 3.34962 3.37690 4.42122 4.86066 4.96299 5.05876 5.28508 5.30860 5.53390 5.65315 5.71492 5.81427 5.83465 5.90682 5.97280 6.01174 6.06310 6.18092 6.24320 6.26389 6.29039 6.35216 6.39950 6.46182 6.51947 6.58168 6.63478 6.67125 6.70103 6.74386 6.80099 6.86772 6.98606 7.13999 7.18966 7.26398 7.45219 7.69271 7.82089 8.07329 8.24205 8.42495 8.57039 9.04107 9.59853 11.04405 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.007661 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.820249 B = 3653.856932 C = 4201.016016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.211 3.789 4 H 0.043 0.957 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.536 5.536 14 C 0.032 3.968 15 C 0.093 3.907 16 H 0.048 0.952 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.104 4.104 20 C -0.064 4.064 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.102 4.102 24 H 0.023 0.977 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 9.034 -7.442 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.104 3.896 4 H 0.061 0.939 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.259 5.259 14 C -0.117 4.117 15 C -0.016 4.016 16 H 0.066 0.934 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.065 4.065 21 C -0.195 4.195 22 C -0.202 4.202 23 C -0.140 4.140 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.511 8.866 -7.310 12.345 hybrid contribution 2.050 -0.022 0.241 2.064 sum -2.461 8.844 -7.069 11.586 Atomic orbital electron populations 1.21719 0.98970 0.98381 1.00540 1.21605 0.92154 0.99432 1.01810 1.19309 0.92679 0.90956 0.86627 0.93905 1.21742 0.92993 1.37375 1.05591 0.92709 1.24889 0.97587 0.95205 0.95729 1.69872 1.34714 1.38290 1.09613 0.86742 0.86619 0.77506 0.78016 1.20799 1.21232 1.20124 1.62491 1.57563 1.01263 1.04628 1.22212 0.97309 0.99228 0.92904 1.21404 0.98059 0.88910 0.93207 0.93390 1.21532 0.99810 0.93490 0.99694 1.21572 1.01369 0.96457 0.96332 1.21564 0.99361 0.98418 0.94775 1.20524 0.95498 0.95858 0.94583 1.21846 1.01006 0.99884 0.96799 1.21978 0.95182 1.00610 1.02437 1.21724 1.01203 0.92980 0.98048 0.95773 0.94416 0.93119 0.94984 0.89159 0.93001 0.95525 0.92352 0.93998 0.91133 0.92431 0.91952 0.92695 0.92333 0.92889 0.93202 0.93006 0.92949 0.91444 0.93181 0.93471 0.92041 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.66 5.11 -26.73 -0.14 -2.79 16 3 C 0.21 5.10 1.56 -68.87 -0.11 4.99 16 4 H 0.04 1.15 6.00 -51.93 -0.31 0.83 16 5 C -0.54 -14.23 7.08 -34.44 -0.24 -14.48 16 6 H 0.05 1.47 5.84 -52.49 -0.31 1.17 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.84 11.30 55.43 0.63 -24.21 16 9 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.54 -11.16 3.92 -228.30 -0.89 -12.06 16 14 C 0.03 0.64 8.36 60.07 0.50 1.14 16 15 C 0.09 1.74 1.51 -67.71 -0.10 1.64 16 16 H 0.05 1.02 5.25 -51.93 -0.27 0.75 16 17 C -0.11 -1.92 5.07 -26.73 -0.14 -2.06 16 18 C -0.12 -1.77 5.65 -26.73 -0.15 -1.92 16 19 C -0.10 -1.35 4.73 -26.73 -0.13 -1.48 16 20 C -0.06 -0.86 0.77 -154.51 -0.12 -0.98 16 21 C -0.14 -1.58 8.47 37.15 0.31 -1.26 16 22 C -0.14 -1.99 7.78 37.16 0.29 -1.71 16 23 C -0.10 -1.59 3.55 -26.73 -0.09 -1.69 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.01 7.59 -51.93 -0.39 0.62 16 27 H 0.03 0.75 6.25 -51.93 -0.32 0.43 16 28 H 0.09 2.41 5.97 -51.93 -0.31 2.09 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.57 6.36 -51.93 -0.33 0.24 16 31 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 32 H 0.04 0.72 6.20 -51.93 -0.32 0.40 16 33 H 0.07 1.45 6.30 -51.93 -0.33 1.13 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.05 4.81 -51.93 -0.25 0.80 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -26.63 326.35 -8.55 -35.18 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.34 Total: 1.37 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 0.16 Total: -21.34 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.27 Total: -36.27 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.63 -8.55 -35.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708572493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.656 kcal (2) G-P(sol) polarization free energy of solvation -26.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds