Wall clock time and date at job start Mon Mar 30 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47169 * 2 1 4 4 H 1.09000 * 109.46977 * 56.02562 * 3 2 1 5 5 C 1.50701 * 109.47002 * 176.02085 * 3 2 1 6 6 H 1.07999 * 119.99873 * 120.00391 * 5 3 2 7 7 C 1.37879 * 120.00160 * 300.00360 * 5 3 2 8 8 N 1.31512 * 119.99800 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99830 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47283 * 90.00029 * 9 7 5 11 11 H 1.48504 * 109.46552 * 209.99817 * 9 7 5 12 12 H 1.48496 * 109.47214 * 329.99470 * 9 7 5 13 13 N 1.46894 * 109.47177 * 296.02418 * 3 2 1 14 14 C 1.46904 * 111.00105 * 295.47050 * 13 3 2 15 15 C 1.46901 * 111.00073 * 171.51740 * 13 3 2 16 16 H 1.09005 * 109.46971 * 57.13389 * 15 13 3 17 17 C 1.52998 * 109.47350 * 297.13671 * 15 13 3 18 18 C 1.53001 * 109.47569 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.46960 * 59.99808 * 18 17 15 20 20 C 1.53003 * 109.47271 * 299.99956 * 19 18 17 21 21 C 1.52992 * 109.46989 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47112 * 300.00267 * 20 19 18 23 23 C 1.52998 * 109.46599 * 60.00278 * 20 19 18 24 24 H 1.09003 * 109.47499 * 175.26473 * 1 2 3 25 25 H 1.09001 * 109.47193 * 295.26525 * 1 2 3 26 26 H 1.09001 * 109.46983 * 55.26570 * 1 2 3 27 27 H 1.09000 * 109.46949 * 239.99708 * 2 1 3 28 28 H 1.08999 * 109.46915 * 120.00047 * 2 1 3 29 29 H 0.96998 * 119.99975 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46733 * 296.04971 * 14 13 3 31 31 H 1.08995 * 109.47016 * 56.04799 * 14 13 3 32 32 H 1.08996 * 109.47256 * 176.04756 * 14 13 3 33 33 H 1.09001 * 109.47104 * 59.99912 * 17 15 13 34 34 H 1.09005 * 109.46874 * 300.00347 * 17 15 13 35 35 H 1.09005 * 109.46853 * 299.99780 * 18 17 15 36 36 H 1.08998 * 109.47126 * 180.02562 * 18 17 15 37 37 H 1.08995 * 109.47377 * 60.00190 * 19 18 17 38 38 H 1.09002 * 109.46738 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47225 * 60.00261 * 21 20 19 40 40 H 1.09002 * 109.47173 * 179.97438 * 21 20 19 41 41 H 1.09005 * 109.47362 * 300.00154 * 21 20 19 42 42 H 1.09004 * 109.47096 * 60.00514 * 22 20 19 43 43 H 1.09002 * 109.47080 * 179.97438 * 22 20 19 44 44 H 1.09000 * 109.47210 * 299.99806 * 22 20 19 45 45 H 1.08995 * 109.47292 * 60.00230 * 23 20 19 46 46 H 1.09002 * 109.46891 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6197 1.9764 0.8522 5 6 3.5438 1.4435 0.0986 6 1 4.1360 1.8928 -0.6849 7 6 4.1636 0.8710 1.1891 8 7 3.4425 0.3244 2.1434 9 14 6.0276 0.8731 1.3115 10 1 6.4762 2.1018 2.0146 11 1 6.4750 -0.3226 2.0701 12 1 6.6134 0.8415 -0.0527 13 7 1.6304 2.1066 -1.2445 14 6 2.2658 1.4783 -2.4105 15 6 1.9255 3.5449 -1.1955 16 1 2.9890 3.6913 -1.0065 17 6 1.1140 4.1941 -0.0726 18 6 1.4208 5.6921 -0.0219 19 6 1.0466 6.3349 -1.3589 20 6 1.8582 5.6858 -2.4818 21 6 1.4843 6.3290 -3.8187 22 6 3.3509 5.8919 -2.2169 23 6 1.5512 4.1878 -2.5324 24 1 -0.3634 -1.0242 -0.0848 25 1 -0.3633 0.4386 0.9294 26 1 -0.3633 0.5855 -0.8445 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8785 -0.0786 2.9103 30 1 3.3461 1.6116 -2.3512 31 1 2.0312 0.4140 -2.4225 32 1 1.8918 1.9432 -3.3226 33 1 1.3803 3.7358 0.8799 34 1 0.0504 4.0476 -0.2615 35 1 2.4843 5.8390 0.1668 36 1 0.8430 6.1545 0.7784 37 1 -0.0168 6.1881 -1.5476 38 1 1.2656 7.4021 -1.3229 39 1 1.7033 7.3961 -3.7823 40 1 2.0629 5.8669 -4.6186 41 1 0.4208 6.1825 -4.0076 42 1 3.6176 5.4338 -1.2644 43 1 3.9291 5.4290 -3.0167 44 1 3.5696 6.9591 -2.1808 45 1 0.4878 4.0409 -2.7212 46 1 2.1298 3.7252 -3.3321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708572493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:38 Heat of formation + Delta-G solvation = -37.801605 kcal Electronic energy + Delta-G solvation = -20923.644009 eV Core-core repulsion = 18232.504936 eV Total energy + Delta-G solvation = -2691.139072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83140 -38.25873 -34.80504 -33.66899 -33.02422 -30.17955 -28.83752 -28.13833 -27.27465 -26.09983 -24.62882 -22.49173 -21.82575 -20.53489 -19.27332 -18.17418 -17.16840 -16.57322 -15.90484 -15.49204 -15.27039 -15.15568 -14.88278 -14.45205 -14.29485 -13.92765 -13.61977 -13.55104 -13.17496 -13.04469 -12.89115 -12.80091 -12.64709 -12.55076 -12.36304 -12.15209 -12.11914 -11.98848 -11.74344 -11.61565 -11.53609 -11.33298 -11.11142 -11.05318 -10.73824 -10.60202 -10.32782 -8.81841 -8.00014 -6.22212 1.33516 1.35922 1.44028 2.39326 3.16604 3.43573 3.84145 3.88638 4.07780 4.30230 4.42146 4.51110 4.55216 4.56614 4.66725 4.70887 4.76011 4.78151 4.83607 4.90430 4.92786 4.94382 5.02560 5.04208 5.10067 5.14956 5.17362 5.25051 5.26609 5.33800 5.37928 5.40841 5.43997 5.49681 5.52554 5.59364 5.61143 5.66961 5.76320 5.85995 6.12221 6.27303 6.46034 6.79717 7.01212 7.47729 8.93523 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020214 B = 0.007661 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.820249 B = 3653.856932 C = 4201.016016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.108 4.108 3 C 0.219 3.781 4 H 0.013 0.987 5 C -0.544 4.544 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.534 5.534 14 C 0.038 3.962 15 C 0.094 3.906 16 H 0.018 0.982 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.063 4.063 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.093 4.093 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.260 0.740 30 H 0.006 0.994 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.620 10.567 -9.141 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.111 3.889 4 H 0.031 0.969 5 C -0.583 4.583 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.766 3.234 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.111 4.111 15 C -0.015 4.015 16 H 0.036 0.964 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.135 4.135 20 C -0.063 4.063 21 C -0.190 4.190 22 C -0.201 4.201 23 C -0.131 4.131 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.117 10.406 -9.021 14.692 hybrid contribution 2.239 -0.497 0.778 2.422 sum -2.878 9.909 -8.243 13.207 Atomic orbital electron populations 1.21569 0.96338 0.99848 1.00548 1.21467 0.94480 0.98612 1.00114 1.19053 0.91279 0.91208 0.87317 0.96902 1.21964 0.94356 1.36760 1.05213 0.93688 1.25551 1.01382 0.95208 0.95639 1.69995 1.36070 1.39007 1.09995 0.85855 0.82139 0.77518 0.77931 1.20522 1.20780 1.19885 1.62474 1.57230 1.02428 1.03544 1.22204 0.96016 0.99236 0.93623 1.21456 0.96509 0.87857 0.95646 0.96369 1.21455 0.99667 0.95535 0.97361 1.21538 1.01015 0.94291 0.98479 1.21544 0.99731 0.99356 0.92914 1.20535 0.95217 0.94242 0.96319 1.21786 1.01546 1.00599 0.95036 1.21954 0.95614 1.01595 1.00895 1.21652 1.01290 0.94602 0.95531 0.93671 0.95007 0.92273 0.95186 0.92209 0.93072 0.97588 0.92833 0.90947 0.95025 0.92060 0.92987 0.91369 0.91420 0.90662 0.91614 0.92818 0.92123 0.94089 0.93379 0.91525 0.91524 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.85 71.98 0.71 -4.42 16 2 C -0.11 -5.25 5.11 30.59 0.16 -5.10 16 3 C 0.22 10.95 1.56 44.17 0.07 11.02 16 4 H 0.01 0.74 6.00 -2.39 -0.01 0.72 16 5 C -0.54 -29.75 7.08 25.60 0.18 -29.57 16 6 H 0.04 2.51 5.84 -2.91 -0.02 2.49 16 7 C 0.02 1.21 5.30 84.66 0.45 1.65 16 8 N -0.91 -52.65 11.30 21.45 0.24 -52.41 16 9 Si 0.94 44.34 29.54 68.60 2.03 46.36 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.53 -22.45 3.92 -876.21 -3.43 -25.88 16 14 C 0.04 1.48 8.36 127.69 1.07 2.55 16 15 C 0.09 3.55 1.51 44.91 0.07 3.62 16 16 H 0.02 0.81 5.25 -2.38 -0.01 0.80 16 17 C -0.10 -3.71 5.07 30.59 0.16 -3.56 16 18 C -0.12 -3.33 5.65 30.59 0.17 -3.15 16 19 C -0.10 -2.28 4.73 30.59 0.14 -2.13 16 20 C -0.06 -1.52 0.77 -52.18 -0.04 -1.56 16 21 C -0.13 -2.52 8.47 71.98 0.61 -1.91 16 22 C -0.14 -3.73 7.78 71.98 0.56 -3.17 16 23 C -0.09 -2.76 3.55 30.59 0.11 -2.65 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 2.29 7.59 -2.39 -0.02 2.28 16 27 H 0.03 1.43 6.25 -2.39 -0.01 1.41 16 28 H 0.06 3.28 5.97 -2.39 -0.01 3.27 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.01 0.24 6.36 -2.38 -0.02 0.23 16 31 H 0.05 2.13 6.16 -2.39 -0.01 2.12 16 32 H 0.07 2.39 6.20 -2.39 -0.01 2.38 16 33 H 0.03 1.37 6.30 -2.39 -0.02 1.35 16 34 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.05 1.60 6.43 -2.38 -0.02 1.59 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.04 1.28 4.81 -2.38 -0.01 1.26 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.68 6.32 -2.39 -0.02 1.67 16 Total: -1.00 -58.63 326.35 4.17 -54.46 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.92 Total: 15.84 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.41 Total: -38.38 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -3.19 Total: -78.29 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -58.63 4.17 -54.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708572493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.660 kcal (2) G-P(sol) polarization free energy of solvation -58.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds