Wall clock time and date at job start Mon Mar 30 2020 07:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52837 * 1 3 3 H 1.11139 * 106.60325 * 2 1 4 4 C 1.52208 * 110.62820 * 244.03984 * 2 1 3 5 5 C 1.52755 * 110.75399 * 285.42214 * 4 2 1 6 6 H 1.08686 * 110.36739 * 60.57990 * 5 4 2 7 7 N 1.47269 * 109.09388 * 180.08681 * 5 4 2 8 8 C 1.46897 * 111.00235 * 176.04468 * 7 5 4 9 9 C 1.46894 * 111.00498 * 300.00498 * 7 5 4 10 10 C 1.52997 * 109.47515 * 169.99698 * 9 7 5 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.52693 * 108.89486 * 299.09488 * 5 4 2 20 20 C 1.52472 * 110.80722 * 61.67001 * 19 5 4 21 21 C 1.54413 * 107.72714 * 188.40201 * 20 19 5 22 22 C 1.53118 * 110.02941 * 71.59708 * 20 19 5 23 23 C 1.51523 * 111.71066 * 117.01117 * 2 1 3 24 24 H 1.08999 * 109.47026 * 175.96174 * 1 2 3 25 25 H 1.09004 * 109.47078 * 295.95327 * 1 2 3 26 26 H 1.09000 * 109.47540 * 55.95886 * 1 2 3 27 27 H 1.09323 * 109.59020 * 164.85831 * 4 2 1 28 28 H 1.09341 * 109.54750 * 45.90412 * 4 2 1 29 29 H 1.08994 * 109.47768 * 183.95827 * 8 7 5 30 30 H 1.09001 * 109.47114 * 303.96429 * 8 7 5 31 31 H 1.09004 * 109.46895 * 63.95945 * 8 7 5 32 32 H 1.09002 * 109.47104 * 49.99430 * 9 7 5 33 33 H 1.08998 * 109.46828 * 290.00263 * 9 7 5 34 34 H 1.09002 * 109.47153 * 59.99762 * 10 9 7 35 35 H 1.09001 * 109.46832 * 299.99953 * 10 9 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 37 37 H 1.09299 * 109.28029 * 182.32189 * 19 5 4 38 38 H 1.09300 * 109.28231 * 301.02270 * 19 5 4 39 39 H 1.09000 * 109.47348 * 181.67525 * 21 20 19 40 40 H 1.09001 * 109.47107 * 301.67220 * 21 20 19 41 41 H 1.09000 * 109.47326 * 61.67078 * 21 20 19 42 42 H 1.09002 * 109.46709 * 294.88956 * 22 20 19 43 43 H 1.09000 * 109.46967 * 54.88878 * 22 20 19 44 44 H 1.08996 * 109.46951 * 174.89121 * 22 20 19 45 45 H 1.10226 * 108.75044 * 204.68536 * 23 2 1 46 46 H 1.10221 * 108.80294 * 319.76110 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8459 1.0650 0.0000 4 6 2.0646 -0.6236 -1.2808 5 6 1.8998 -2.1420 -1.2538 6 1 0.8493 -2.4070 -1.1677 7 7 2.4309 -2.7065 -2.5060 8 6 2.3791 -4.1744 -2.4854 9 6 1.7141 -2.1707 -3.6708 10 6 2.4449 -2.5788 -4.9515 11 6 1.7091 -2.0296 -6.1466 12 1 0.8104 -1.4474 -6.0066 13 6 2.1840 -2.2696 -7.4186 14 7 3.2787 -2.9782 -7.5890 15 14 1.2723 -1.5883 -8.8998 16 1 1.7979 -0.2384 -9.2266 17 1 1.4709 -2.4915 -10.0617 18 1 -0.1766 -1.4934 -8.5886 19 6 2.6920 -2.7045 -0.0758 20 6 2.1620 -2.1562 1.2445 21 6 3.1354 -2.5944 2.3602 22 6 0.7967 -2.7741 1.5587 23 6 2.0889 -0.6393 1.2542 24 1 -0.3633 -1.0251 -0.0724 25 1 -0.3633 0.4498 0.9241 26 1 -0.3634 0.5753 -0.8515 27 1 3.1242 -0.3785 -1.3920 28 1 1.5224 -0.2187 -2.1397 29 1 2.8411 -4.5671 -3.3911 30 1 2.9173 -4.5448 -1.6129 31 1 1.3401 -4.5006 -2.4368 32 1 1.6756 -1.0834 -3.6052 33 1 0.6999 -2.5697 -3.6883 34 1 2.4834 -3.6662 -5.0172 35 1 3.4591 -2.1797 -4.9339 36 1 3.6125 -3.1473 -8.4839 37 1 2.6122 -3.7945 -0.0749 38 1 3.7448 -2.4322 -0.1859 39 1 2.7666 -2.2417 3.3234 40 1 3.2058 -3.6820 2.3744 41 1 4.1208 -2.1690 2.1704 42 1 0.0722 -2.4546 0.8096 43 1 0.8781 -3.8610 1.5451 44 1 0.4680 -2.4466 2.5450 45 1 3.1011 -0.2412 1.4329 46 1 1.4803 -0.3226 2.1168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708748892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:47 Heat of formation + Delta-G solvation = -31.168144 kcal Electronic energy + Delta-G solvation = -20100.308617 eV Core-core repulsion = 17409.457193 eV Total energy + Delta-G solvation = -2690.851424 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85961 -36.56370 -34.01471 -33.06091 -30.72840 -28.90078 -27.61224 -26.75547 -26.57029 -25.03879 -23.80878 -21.04924 -20.54724 -19.42341 -17.89374 -16.50092 -15.68549 -14.83716 -14.56221 -14.39040 -14.34269 -14.06562 -13.82730 -13.47071 -13.22394 -12.90204 -12.43230 -12.24096 -12.21744 -12.09485 -11.82346 -11.65979 -11.28135 -11.14103 -11.03824 -10.89514 -10.86295 -10.72593 -10.54411 -10.47509 -10.25412 -10.06074 -9.73763 -9.52029 -9.25748 -9.04404 -8.28760 -7.58703 -5.95791 -3.97816 3.34208 3.40218 3.43426 4.34557 4.52447 4.62208 4.70106 4.91447 5.07735 5.15363 5.23351 5.39038 5.40075 5.45355 5.53356 5.58825 5.63167 5.69353 5.75823 5.80455 5.86459 5.86611 5.93665 6.01320 6.01881 6.08846 6.12290 6.19630 6.21098 6.30914 6.40219 6.42847 6.47181 6.49157 6.57252 6.64268 6.71265 7.08390 7.61176 7.68194 7.87432 7.97622 8.14662 8.49054 9.09742 9.65515 11.15657 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.004626 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.606917 B = 6051.523705 C = 6507.527544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.059 0.941 4 C -0.108 4.108 5 C 0.088 3.912 6 H 0.035 0.965 7 N -0.540 5.540 8 C 0.024 3.976 9 C 0.060 3.940 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.100 4.100 20 C -0.056 4.056 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.096 4.096 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.014 0.986 32 H 0.064 0.936 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 2.214 19.583 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.146 4.146 5 C -0.020 4.020 6 H 0.053 0.947 7 N -0.265 5.265 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.009 4.009 11 C -0.559 4.559 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.138 4.138 20 C -0.057 4.057 21 C -0.201 4.201 22 C -0.201 4.201 23 C -0.133 4.133 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.447 2.291 19.410 19.697 hybrid contribution -1.294 0.074 -0.862 1.557 sum -3.741 2.364 18.548 19.068 Atomic orbital electron populations 1.21951 0.95575 1.01943 1.01121 1.20770 0.95445 0.99310 0.94673 0.92246 1.21511 1.02026 0.94571 0.96461 1.21418 0.95992 0.94595 0.89997 0.94669 1.62237 1.56173 1.06022 1.02024 1.22406 0.98953 0.88616 1.02406 1.22396 0.94669 0.98919 0.90693 1.19086 0.96036 0.96693 0.89096 1.21209 1.10257 1.33241 0.91223 0.92900 1.24984 0.95049 0.95295 0.98952 1.69975 1.21846 1.39408 1.22066 0.86619 0.80152 0.78872 0.82497 1.20655 1.21252 1.19962 1.21583 1.00195 0.99782 0.92248 1.20368 0.95332 0.94785 0.95179 1.22270 0.98980 1.01045 0.97842 1.22044 0.96796 1.00230 1.01050 1.21253 1.00968 0.94067 0.97037 0.92398 0.93170 0.92754 0.91276 0.91365 0.90590 0.92298 0.96704 0.91735 0.96610 0.96572 0.95824 0.93059 0.92029 0.91316 0.93093 0.92832 0.92754 0.92147 0.92972 0.93103 0.92570 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.88 37.07 0.33 -1.30 16 2 C -0.08 -0.96 2.60 -91.85 -0.24 -1.20 16 3 H 0.06 0.66 8.29 -50.70 -0.42 0.23 16 4 C -0.11 -1.56 4.42 -27.26 -0.12 -1.68 16 5 C 0.09 1.34 1.75 -67.79 -0.12 1.22 16 6 H 0.04 0.55 6.28 -52.10 -0.33 0.23 16 7 N -0.54 -10.08 4.61 -235.08 -1.08 -11.16 16 8 C 0.02 0.43 8.97 60.06 0.54 0.97 16 9 C 0.06 1.30 4.71 -3.83 -0.02 1.28 16 10 C 0.03 0.75 4.90 -27.88 -0.14 0.62 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.10 -1.30 3.52 -27.16 -0.10 -1.39 16 20 C -0.06 -0.59 0.71 -154.56 -0.11 -0.70 16 21 C -0.14 -1.34 8.10 37.90 0.31 -1.04 16 22 C -0.14 -1.46 8.01 37.22 0.30 -1.16 16 23 C -0.10 -1.00 4.12 -28.06 -0.12 -1.11 16 24 H 0.06 0.66 4.88 -51.93 -0.25 0.41 16 25 H 0.05 0.47 8.05 -51.93 -0.42 0.06 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.05 8.17 -51.75 -0.42 0.63 16 28 H 0.07 1.08 6.08 -51.74 -0.31 0.76 16 29 H 0.08 1.47 6.47 -51.93 -0.34 1.14 16 30 H 0.06 0.88 5.98 -51.93 -0.31 0.57 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 1.38 5.78 -51.93 -0.30 1.08 16 33 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 34 H 0.02 0.45 6.55 -51.93 -0.34 0.11 16 35 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.06 0.79 6.12 -51.76 -0.32 0.48 16 38 H 0.07 0.95 8.12 -51.76 -0.42 0.53 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.51 8.05 -51.93 -0.42 0.09 16 42 H 0.06 0.65 4.70 -51.93 -0.24 0.41 16 43 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.57 7.92 -51.23 -0.41 0.17 16 46 H 0.05 0.52 7.92 -51.23 -0.41 0.12 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -29.73 334.51 -8.79 -38.53 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.57 Total: -3.60 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 0.11 Total: -19.19 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.35 Total: -37.67 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.73 -8.79 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708748892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.359 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds