Wall clock time and date at job start Mon Mar 30 2020 07:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52837 * 1 3 3 H 1.11139 * 106.60325 * 2 1 4 4 C 1.52208 * 110.62820 * 244.03984 * 2 1 3 5 5 C 1.52755 * 110.75399 * 285.42214 * 4 2 1 6 6 H 1.08686 * 110.36739 * 60.57990 * 5 4 2 7 7 N 1.47269 * 109.09388 * 180.08681 * 5 4 2 8 8 C 1.46897 * 111.00235 * 176.04468 * 7 5 4 9 9 C 1.46894 * 111.00498 * 300.00498 * 7 5 4 10 10 C 1.52997 * 109.47515 * 169.99698 * 9 7 5 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.52693 * 108.89486 * 299.09488 * 5 4 2 20 20 C 1.52472 * 110.80722 * 61.67001 * 19 5 4 21 21 C 1.54413 * 107.72714 * 188.40201 * 20 19 5 22 22 C 1.53118 * 110.02941 * 71.59708 * 20 19 5 23 23 C 1.51523 * 111.71066 * 117.01117 * 2 1 3 24 24 H 1.08999 * 109.47026 * 175.96174 * 1 2 3 25 25 H 1.09004 * 109.47078 * 295.95327 * 1 2 3 26 26 H 1.09000 * 109.47540 * 55.95886 * 1 2 3 27 27 H 1.09323 * 109.59020 * 164.85831 * 4 2 1 28 28 H 1.09341 * 109.54750 * 45.90412 * 4 2 1 29 29 H 1.08994 * 109.47768 * 183.95827 * 8 7 5 30 30 H 1.09001 * 109.47114 * 303.96429 * 8 7 5 31 31 H 1.09004 * 109.46895 * 63.95945 * 8 7 5 32 32 H 1.09002 * 109.47104 * 49.99430 * 9 7 5 33 33 H 1.08998 * 109.46828 * 290.00263 * 9 7 5 34 34 H 1.09002 * 109.47153 * 59.99762 * 10 9 7 35 35 H 1.09001 * 109.46832 * 299.99953 * 10 9 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 37 37 H 1.09299 * 109.28029 * 182.32189 * 19 5 4 38 38 H 1.09300 * 109.28231 * 301.02270 * 19 5 4 39 39 H 1.09000 * 109.47348 * 181.67525 * 21 20 19 40 40 H 1.09001 * 109.47107 * 301.67220 * 21 20 19 41 41 H 1.09000 * 109.47326 * 61.67078 * 21 20 19 42 42 H 1.09002 * 109.46709 * 294.88956 * 22 20 19 43 43 H 1.09000 * 109.46967 * 54.88878 * 22 20 19 44 44 H 1.08996 * 109.46951 * 174.89121 * 22 20 19 45 45 H 1.10226 * 108.75044 * 204.68536 * 23 2 1 46 46 H 1.10221 * 108.80294 * 319.76110 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8459 1.0650 0.0000 4 6 2.0646 -0.6236 -1.2808 5 6 1.8998 -2.1420 -1.2538 6 1 0.8493 -2.4070 -1.1677 7 7 2.4309 -2.7065 -2.5060 8 6 2.3791 -4.1744 -2.4854 9 6 1.7141 -2.1707 -3.6708 10 6 2.4449 -2.5788 -4.9515 11 6 1.7091 -2.0296 -6.1466 12 1 0.8104 -1.4474 -6.0066 13 6 2.1840 -2.2696 -7.4186 14 7 3.2787 -2.9782 -7.5890 15 14 1.2723 -1.5883 -8.8998 16 1 1.7979 -0.2384 -9.2266 17 1 1.4709 -2.4915 -10.0617 18 1 -0.1766 -1.4934 -8.5886 19 6 2.6920 -2.7045 -0.0758 20 6 2.1620 -2.1562 1.2445 21 6 3.1354 -2.5944 2.3602 22 6 0.7967 -2.7741 1.5587 23 6 2.0889 -0.6393 1.2542 24 1 -0.3633 -1.0251 -0.0724 25 1 -0.3633 0.4498 0.9241 26 1 -0.3634 0.5753 -0.8515 27 1 3.1242 -0.3785 -1.3920 28 1 1.5224 -0.2187 -2.1397 29 1 2.8411 -4.5671 -3.3911 30 1 2.9173 -4.5448 -1.6129 31 1 1.3401 -4.5006 -2.4368 32 1 1.6756 -1.0834 -3.6052 33 1 0.6999 -2.5697 -3.6883 34 1 2.4834 -3.6662 -5.0172 35 1 3.4591 -2.1797 -4.9339 36 1 3.6125 -3.1473 -8.4839 37 1 2.6122 -3.7945 -0.0749 38 1 3.7448 -2.4322 -0.1859 39 1 2.7666 -2.2417 3.3234 40 1 3.2058 -3.6820 2.3744 41 1 4.1208 -2.1690 2.1704 42 1 0.0722 -2.4546 0.8096 43 1 0.8781 -3.8610 1.5451 44 1 0.4680 -2.4466 2.5450 45 1 3.1011 -0.2412 1.4329 46 1 1.4803 -0.3226 2.1168 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708748892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:46 Heat of formation + Delta-G solvation = -47.650993 kcal Electronic energy + Delta-G solvation = -20101.023367 eV Core-core repulsion = 17409.457193 eV Total energy + Delta-G solvation = -2691.566174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93952 -37.97258 -35.20436 -34.91504 -32.39086 -30.46076 -28.42045 -28.17434 -27.38247 -26.39645 -25.59286 -22.60563 -21.74157 -20.80461 -18.91196 -18.58075 -17.03836 -16.51117 -15.97275 -15.78104 -15.41512 -15.20389 -14.98458 -14.87436 -14.28649 -14.11459 -14.00023 -13.81196 -13.32495 -13.19805 -13.00103 -12.85282 -12.82252 -12.63255 -12.41210 -12.37238 -12.06186 -11.95857 -11.78962 -11.68553 -11.49280 -11.40397 -11.25592 -11.08311 -10.87445 -10.59918 -10.52520 -9.12215 -8.20086 -6.31573 1.39278 1.41165 1.52063 2.39961 3.05668 3.13121 3.71100 3.73326 3.93273 4.17558 4.21802 4.28169 4.30282 4.33960 4.41639 4.51614 4.54879 4.63679 4.70839 4.79309 4.81873 4.86847 4.89294 4.97307 4.98443 5.03341 5.09528 5.13123 5.13985 5.18307 5.20118 5.24464 5.28677 5.41302 5.46253 5.48928 5.56190 5.61050 5.65448 5.68396 5.80858 6.12433 6.35842 6.39569 6.85509 7.37450 8.92181 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.033501 B = 0.004626 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.606917 B = 6051.523705 C = 6507.527544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.067 0.933 4 C -0.106 4.106 5 C 0.091 3.909 6 H 0.034 0.966 7 N -0.553 5.553 8 C 0.028 3.972 9 C 0.078 3.922 10 C 0.038 3.962 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.966 3.034 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.095 4.095 20 C -0.054 4.054 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.096 4.096 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.066 0.934 33 H 0.012 0.988 34 H -0.007 1.007 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 2.969 21.183 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.144 4.144 5 C -0.016 4.016 6 H 0.052 0.948 7 N -0.278 5.278 8 C -0.120 4.120 9 C -0.049 4.049 10 C 0.000 4.000 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.132 4.132 20 C -0.055 4.055 21 C -0.198 4.198 22 C -0.200 4.200 23 C -0.133 4.133 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.030 0.970 34 H 0.011 0.989 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.600 3.048 21.033 21.556 hybrid contribution -0.891 -0.185 -1.338 1.618 sum -4.491 2.863 19.695 20.403 Atomic orbital electron populations 1.21935 0.94907 1.01674 1.01865 1.20743 0.95934 0.99517 0.93618 0.91497 1.21493 1.01055 0.94162 0.97647 1.21504 0.96127 0.95043 0.88950 0.94771 1.62177 1.56209 1.06800 1.02583 1.22369 0.99374 0.87936 1.02304 1.22010 0.93818 0.99024 0.90068 1.18908 0.94686 0.94889 0.91505 1.21619 1.10720 1.33619 0.92368 0.92385 1.25957 0.95849 0.95366 1.02384 1.70114 1.23456 1.40519 1.23082 0.85437 0.79123 0.78314 0.78105 1.19659 1.20603 1.18769 1.21552 0.99264 0.99820 0.92587 1.20349 0.96065 0.94980 0.94066 1.22229 0.98489 1.01204 0.97853 1.22035 0.96030 1.00258 1.01670 1.21252 1.01506 0.93743 0.96826 0.92962 0.91157 0.93518 0.92596 0.93304 0.93350 0.89489 0.96221 0.91531 0.96989 0.98864 0.99141 0.92751 0.91900 0.92306 0.91584 0.92660 0.92928 0.93070 0.92928 0.91446 0.92256 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.88 71.93 0.64 -2.29 16 2 C -0.08 -1.70 2.60 -11.59 -0.03 -1.73 16 3 H 0.07 1.35 8.29 -1.23 -0.01 1.34 16 4 C -0.11 -3.03 4.42 30.25 0.13 -2.90 16 5 C 0.09 2.73 1.75 44.66 0.08 2.81 16 6 H 0.03 1.05 6.28 -2.55 -0.02 1.04 16 7 N -0.55 -21.08 4.61 -897.66 -4.14 -25.22 16 8 C 0.03 1.00 8.97 127.69 1.15 2.15 16 9 C 0.08 3.51 4.71 86.30 0.41 3.92 16 10 C 0.04 2.09 4.90 29.85 0.15 2.24 16 11 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 13 C 0.00 0.14 5.46 84.66 0.46 0.60 16 14 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 15 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 19 C -0.09 -2.32 3.52 30.32 0.11 -2.22 16 20 C -0.05 -1.02 0.71 -52.21 -0.04 -1.05 16 21 C -0.14 -2.22 8.10 72.46 0.59 -1.63 16 22 C -0.14 -2.50 8.01 72.02 0.58 -1.92 16 23 C -0.10 -1.74 4.12 29.74 0.12 -1.62 16 24 H 0.05 1.10 4.88 -2.39 -0.01 1.09 16 25 H 0.07 1.12 8.05 -2.38 -0.02 1.10 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.73 8.17 -2.22 -0.02 1.71 16 28 H 0.05 1.57 6.08 -2.21 -0.01 1.55 16 29 H 0.05 1.96 6.47 -2.39 -0.02 1.95 16 30 H 0.09 2.56 5.98 -2.39 -0.01 2.54 16 31 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 2.94 5.78 -2.39 -0.01 2.92 16 33 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 34 H -0.01 -0.41 6.55 -2.39 -0.02 -0.43 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.06 1.52 6.12 -2.23 -0.01 1.50 16 38 H 0.06 1.57 8.12 -2.23 -0.02 1.55 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.85 8.05 -2.39 -0.02 0.83 16 42 H 0.05 0.99 4.70 -2.39 -0.01 0.98 16 43 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.05 7.92 -1.73 -0.01 1.04 16 46 H 0.07 1.12 7.92 -1.73 -0.01 1.10 16 Total: -1.00 -64.95 334.51 3.67 -61.27 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.94 Total: 10.14 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.57 Total: -35.50 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.86 Total: -83.05 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.95 3.67 -61.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708748892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.619 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds