Wall clock time and date at job start Mon Mar 30 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.46898 * 110.99742 * 84.99876 * 13 2 1 15 15 C 1.53003 * 109.47204 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.47237 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.46704 * 304.99762 * 16 15 14 18 18 C 1.52989 * 109.47241 * 65.00251 * 16 15 14 19 19 C 1.53002 * 109.47241 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.46752 * 299.99824 * 19 18 16 21 21 C 1.52997 * 109.46933 * 60.00285 * 20 19 18 22 22 H 1.08999 * 109.47249 * 60.00106 * 21 20 19 23 23 C 1.53008 * 109.47196 * 179.97438 * 21 20 19 24 24 C 1.52999 * 109.46750 * 185.00465 * 16 15 14 25 25 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 26 26 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 28 28 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 29 29 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 30 30 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99954 * 321.04663 * 13 2 1 32 32 H 1.09002 * 109.47485 * 300.00390 * 14 13 2 33 33 H 1.09008 * 109.47330 * 60.00398 * 14 13 2 34 34 H 1.09002 * 109.47404 * 300.00668 * 15 14 13 35 35 H 1.09008 * 109.46466 * 60.00096 * 15 14 13 36 36 H 1.09002 * 109.47168 * 299.99917 * 18 16 15 37 37 H 1.09006 * 109.47214 * 60.00094 * 18 16 15 38 38 H 1.08998 * 109.47137 * 60.00118 * 19 18 16 39 39 H 1.09002 * 109.47149 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.46582 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47319 * 299.99623 * 20 19 18 42 42 H 1.09006 * 109.47008 * 59.99614 * 23 21 20 43 43 H 1.08994 * 109.47374 * 179.97438 * 23 21 20 44 44 H 1.09004 * 109.46793 * 299.99883 * 23 21 20 45 45 H 1.08998 * 109.47222 * 299.99851 * 24 16 15 46 46 H 1.08994 * 109.47431 * 59.99881 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.5837 -0.2911 1.2661 11 1 6.4864 -0.3661 3.6882 12 1 6.6863 -2.4222 2.4180 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5961 -0.5328 -3.5742 16 6 2.6620 0.4205 -4.7692 17 1 1.6861 0.8821 -4.9199 18 6 3.7039 1.5074 -4.4976 19 6 3.7703 2.4603 -5.6928 20 6 4.1644 1.6781 -6.9473 21 6 3.1224 0.5912 -7.2189 22 1 2.1467 1.0529 -7.3702 23 6 3.5162 -0.1906 -8.4738 24 6 3.0557 -0.3613 -6.0240 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.7516 -1.7715 1.2055 29 1 1.6054 -0.2619 2.1370 30 1 4.0610 -2.2456 4.0342 31 1 1.4495 -1.4979 -1.4101 32 1 1.0870 0.6164 -2.5525 33 1 2.7588 1.0462 -2.1182 34 1 3.5916 -0.9263 -3.3684 35 1 1.9199 -1.3566 -3.8030 36 1 3.4234 2.0643 -3.6035 37 1 4.6798 1.0457 -4.3468 38 1 2.7946 2.9220 -5.8440 39 1 4.5129 3.2344 -5.4994 40 1 4.2112 2.3570 -7.7988 41 1 5.1401 1.2165 -6.7961 42 1 4.4921 -0.6523 -8.3230 43 1 2.7742 -0.9652 -8.6670 44 1 3.5632 0.4885 -9.3251 45 1 4.0315 -0.8229 -5.8733 46 1 2.3135 -1.1356 -6.2175 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709995696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:07 Heat of formation + Delta-G solvation = -54.815584 kcal Electronic energy + Delta-G solvation = -19170.062844 eV Core-core repulsion = 16478.185991 eV Total energy + Delta-G solvation = -2691.876854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19669 -36.79445 -34.12232 -32.52308 -31.90107 -30.22033 -27.24907 -26.83750 -26.30006 -23.15940 -22.17444 -22.09042 -20.18373 -19.82878 -19.40139 -16.16811 -15.48448 -15.19818 -14.78533 -14.45583 -14.37015 -14.18021 -13.91898 -13.60365 -13.16839 -12.52180 -12.50442 -12.36169 -12.00821 -11.94084 -11.71614 -11.68009 -11.39523 -11.30055 -11.04494 -10.96753 -10.88020 -10.61594 -10.55269 -10.40285 -10.39301 -10.01461 -9.92715 -9.83227 -9.19028 -8.90116 -8.20644 -7.46255 -5.82759 -3.79824 3.41556 3.48635 3.54236 4.48318 4.57484 4.61335 4.66277 4.91351 5.01576 5.08609 5.26549 5.35988 5.37687 5.45028 5.52196 5.54968 5.57908 5.59408 5.70859 5.74250 5.80173 5.82102 5.89685 5.93848 5.98015 6.01585 6.05233 6.10196 6.17853 6.22474 6.23637 6.29284 6.36690 6.50398 6.53634 6.65494 6.69730 7.09917 7.64481 7.76611 8.10906 8.13846 8.26291 8.66875 9.25871 9.81198 11.29562 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022636 B = 0.004209 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.658835 B = 6650.142533 C = 7331.509142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.665 5.665 14 C 0.060 3.940 15 C -0.112 4.112 16 C -0.083 4.083 17 H 0.064 0.936 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.092 4.092 22 H 0.066 0.934 23 C -0.147 4.147 24 C -0.108 4.108 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.256 0.744 31 H 0.329 0.671 32 H 0.014 0.986 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 5.704 -20.884 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.151 4.151 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.069 4.069 15 C -0.150 4.150 16 C -0.102 4.102 17 H 0.083 0.917 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.111 4.111 22 H 0.085 0.915 23 C -0.205 4.205 24 C -0.145 4.145 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.051 5.698 -20.561 21.434 hybrid contribution 0.036 0.073 -0.047 0.094 sum -2.016 5.771 -20.608 21.495 Atomic orbital electron populations 1.22552 0.99690 1.01101 1.00489 1.21778 0.89763 0.98082 0.92422 0.91959 1.19122 0.96236 0.95376 0.89784 1.21197 0.91944 1.32514 1.06661 0.92341 1.25013 0.97964 0.96008 0.96096 1.69983 1.35023 1.37207 1.12456 0.86583 0.86564 0.77536 0.77560 1.19865 1.21450 1.21331 1.60538 1.57606 1.08647 1.02698 1.21999 0.98016 0.96121 0.90800 1.21608 1.02367 0.97617 0.93409 1.21116 0.98782 0.95895 0.94433 0.91727 1.21644 0.99480 0.96656 0.97636 1.21542 1.01200 0.97886 0.95080 1.21595 0.98832 0.97198 0.97499 1.21127 0.99072 0.96049 0.94828 0.91536 1.21838 1.01436 0.99949 0.97254 1.21627 1.01696 0.97441 0.93780 0.94497 0.93102 0.92585 0.96553 0.96577 0.93464 0.85417 0.96831 0.91356 0.90977 0.92561 0.91572 0.91821 0.92309 0.92247 0.92508 0.92037 0.92739 0.92823 0.92994 0.91896 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 9.16 37.16 0.34 -2.77 16 2 C 0.09 1.85 2.53 -67.71 -0.17 1.67 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.92 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.48 -13.97 8.84 -34.44 -0.30 -14.27 16 6 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.94 13.29 55.43 0.74 -27.20 16 9 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.67 -12.70 5.96 -106.72 -0.64 -13.34 16 14 C 0.06 0.94 5.24 -3.82 -0.02 0.92 16 15 C -0.11 -1.50 4.94 -26.73 -0.13 -1.63 16 16 C -0.08 -0.93 2.19 -90.62 -0.20 -1.13 16 17 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 18 C -0.12 -1.32 4.96 -26.74 -0.13 -1.45 16 19 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 20 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 21 C -0.09 -0.82 2.72 -90.64 -0.25 -1.06 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 C -0.15 -1.16 9.19 37.16 0.34 -0.81 16 24 C -0.11 -1.08 4.48 -26.76 -0.12 -1.20 16 25 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 26 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.33 5.88 8.47 -39.29 -0.33 5.55 16 32 H 0.01 0.20 7.44 -51.93 -0.39 -0.18 16 33 H 0.07 1.13 6.48 -51.92 -0.34 0.80 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.80 6.56 -51.93 -0.34 0.46 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -30.15 352.40 -10.12 -40.26 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -9.34 Total: -0.37 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -1.17 Total: -22.15 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.10 Total: -40.54 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.15 -10.12 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.552 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds