Wall clock time and date at job start Mon Mar 30 2020 07:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.53004 * 109.47119 * 175.00007 * 4 2 1 6 6 C 1.54262 * 110.03305 * 292.16908 * 5 4 2 7 7 C 1.54890 * 104.19523 * 217.10491 * 6 5 4 8 8 C 1.54887 * 102.74861 * 37.94375 * 7 6 5 9 9 C 1.53869 * 110.03168 * 174.99896 * 5 4 2 10 10 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 11 11 C 1.46901 * 110.99793 * 275.00325 * 10 2 1 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 2 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 H 1.08009 * 120.00339 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00776 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99696 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47265 * 89.99852 * 19 17 15 21 21 H 1.48502 * 109.47140 * 209.99881 * 19 17 15 22 22 H 1.48501 * 109.46982 * 329.99994 * 19 17 15 23 23 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 25 25 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 26 26 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 27 27 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 28 28 H 1.09006 * 110.01508 * 53.60813 * 5 4 2 29 29 H 1.09003 * 110.48442 * 335.78000 * 6 5 4 30 30 H 1.08997 * 110.48852 * 98.42254 * 6 5 4 31 31 H 1.08994 * 110.75402 * 279.62294 * 7 6 5 32 32 H 1.09005 * 110.91206 * 156.32961 * 7 6 5 33 33 H 1.09002 * 110.48449 * 203.38176 * 8 7 6 34 34 H 1.08996 * 110.49322 * 80.73590 * 8 7 6 35 35 H 1.09003 * 110.02960 * 238.56923 * 9 5 4 36 36 H 1.09002 * 110.03319 * 359.95068 * 9 5 4 37 37 H 1.00898 * 110.99995 * 38.95403 * 10 2 1 38 38 H 1.09002 * 109.47401 * 59.99808 * 11 10 2 39 39 H 1.09001 * 109.46874 * 299.99821 * 11 10 2 40 40 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 41 41 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 42 42 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 43 43 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 44 44 H 1.08992 * 109.47098 * 299.99158 * 14 13 12 45 45 H 1.09001 * 109.47583 * 60.00267 * 14 13 12 46 46 H 0.96996 * 120.00667 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 3.9805 0.8495 -1.5728 7 6 5.2086 0.7351 -2.5098 8 6 4.8258 -0.4491 -3.4318 9 6 4.1022 -1.4390 -2.4956 10 7 2.0196 -0.6925 1.1995 11 6 2.0823 0.2227 2.3469 12 6 2.5961 -0.5328 3.5742 13 6 2.6608 0.4202 4.7694 14 6 3.1752 -0.3351 5.9966 15 6 3.2395 0.6037 7.1737 16 1 2.9428 1.6358 7.0583 17 6 3.6762 0.1449 8.3984 18 7 3.7319 0.9640 9.4258 19 14 4.1888 -1.6402 8.5983 20 1 5.6393 -1.7741 8.3095 21 1 3.9187 -2.0798 9.9908 22 1 3.4159 -2.4859 7.6535 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.7516 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1369 28 1 4.0037 -0.9673 -0.3807 29 1 3.1745 1.3936 -2.0650 30 1 4.2575 1.3385 -0.6389 31 1 6.1090 0.5058 -1.9401 32 1 5.3421 1.6485 -3.0894 33 1 5.7196 -0.9078 -3.8546 34 1 4.1563 -0.1148 -4.2243 35 1 4.8025 -2.1931 -2.1364 36 1 3.2768 -1.9174 -3.0228 37 1 1.4495 -1.4979 1.4101 38 1 1.0869 0.6164 2.5525 39 1 2.7587 1.0463 2.1182 40 1 1.9201 -1.3566 3.8031 41 1 3.5915 -0.9261 3.3683 42 1 3.3367 1.2443 4.5409 43 1 1.6652 0.8132 4.9752 44 1 2.4998 -1.1593 6.2254 45 1 4.1710 -0.7277 5.7906 46 1 4.0395 0.6413 10.2873 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712589446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:51 Heat of formation + Delta-G solvation = -53.351082 kcal Electronic energy + Delta-G solvation = -18715.316885 eV Core-core repulsion = 16023.503537 eV Total energy + Delta-G solvation = -2691.813348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.98995 -37.06973 -34.80020 -32.69730 -31.26609 -29.65010 -28.79799 -27.84257 -25.25824 -24.06536 -21.44733 -21.14797 -20.50125 -19.90856 -19.50845 -16.62250 -16.07250 -15.65302 -15.39694 -15.06813 -14.44499 -14.09663 -13.79498 -13.57853 -13.43515 -12.89933 -12.66273 -12.50100 -12.36959 -12.09493 -11.70921 -11.49100 -11.42295 -11.24514 -11.11721 -11.10333 -10.79957 -10.74382 -10.57807 -10.51552 -10.47632 -10.36997 -9.84589 -9.64339 -9.42958 -9.11392 -8.49666 -8.31350 -6.00380 -3.97875 3.34132 3.40996 3.45715 4.19742 4.42636 4.49267 4.54151 4.61304 4.84005 5.02448 5.11756 5.28461 5.33163 5.34095 5.37041 5.41281 5.47372 5.52502 5.54205 5.59991 5.66313 5.71055 5.73066 5.81703 5.83559 5.90431 5.96501 6.01991 6.08998 6.14033 6.15779 6.20141 6.27461 6.42418 6.51721 6.71243 6.81114 6.95807 7.17608 7.38248 7.45267 7.51567 7.85113 8.59085 9.04964 9.62734 11.13292 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.003325 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.679535 B = 8419.130357 C = 8826.315857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 H 0.077 0.923 4 C -0.097 4.097 5 C -0.086 4.086 6 C -0.119 4.119 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.122 4.122 10 N -0.683 5.683 11 C 0.060 3.940 12 C -0.118 4.118 13 C -0.101 4.101 14 C -0.014 4.014 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.265 1.265 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.338 0.662 38 H 0.026 0.974 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.011 0.989 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -3.671 -26.224 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.156 4.156 7 C -0.164 4.164 8 C -0.162 4.162 9 C -0.160 4.160 10 N -0.313 5.313 11 C -0.069 4.069 12 C -0.156 4.156 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.044 0.956 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.029 0.971 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.913 -3.581 -26.197 26.510 hybrid contribution -0.720 -0.760 0.524 1.171 sum -2.633 -4.341 -25.673 26.170 Atomic orbital electron populations 1.22515 0.97713 1.01962 1.02056 1.21610 0.92006 0.98345 0.91034 0.90497 1.21676 0.95355 1.00303 0.96152 1.21707 0.95173 0.94652 0.98918 1.22434 0.97196 0.96816 0.99185 1.22498 0.98417 0.97909 0.97589 1.22350 0.99701 0.96375 0.97794 1.22242 0.99527 0.97917 0.96317 1.60617 1.56976 1.09842 1.03897 1.22059 0.99141 0.95484 0.90194 1.21663 1.01292 0.98718 0.93914 1.21412 1.00631 0.97755 0.94122 1.19567 0.95593 0.96269 0.93692 1.21202 1.43733 0.97819 0.92992 0.91155 1.25053 0.95178 0.97543 0.95889 1.69921 1.48061 1.35338 1.01251 0.86756 0.79321 0.85909 0.77165 1.20298 1.21477 1.19007 0.92576 0.92630 0.92361 0.92178 0.92294 0.89367 0.92114 0.91734 0.91599 0.92061 0.92173 0.92064 0.92115 0.92202 0.84462 0.95566 0.91326 0.92863 0.91726 0.92899 0.93124 0.96811 0.97097 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.16 37.15 0.34 -1.31 16 2 C 0.08 0.79 2.51 -67.71 -0.17 0.62 16 3 H 0.08 0.81 7.03 -51.93 -0.36 0.45 16 4 C -0.10 -0.86 4.02 -26.73 -0.11 -0.97 16 5 C -0.09 -0.81 2.87 -89.50 -0.26 -1.07 16 6 C -0.12 -1.09 5.46 -25.07 -0.14 -1.23 16 7 C -0.13 -1.07 6.91 -24.74 -0.17 -1.24 16 8 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 9 C -0.12 -1.05 6.46 -25.61 -0.17 -1.21 16 10 N -0.68 -7.86 5.62 -106.72 -0.60 -8.46 16 11 C 0.06 0.81 5.48 -3.82 -0.02 0.79 16 12 C -0.12 -1.90 5.47 -26.73 -0.15 -2.05 16 13 C -0.10 -2.03 5.15 -26.73 -0.14 -2.16 16 14 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 15 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 16 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 19 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 24 H 0.05 0.55 7.45 -51.93 -0.39 0.16 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.00 -51.93 -0.42 0.07 16 28 H 0.09 1.02 7.62 -51.93 -0.40 0.62 16 29 H 0.06 0.53 7.76 -51.93 -0.40 0.13 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 37 H 0.34 3.72 8.47 -39.29 -0.33 3.39 16 38 H 0.03 0.35 7.44 -51.93 -0.39 -0.03 16 39 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 45 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -30.17 353.69 -10.20 -40.37 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.35 Total: -1.83 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -1.69 Total: -25.20 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.17 Total: -36.24 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.17 -10.20 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712589446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.981 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds