Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47045 * 2 1 4 4 C 1.53002 * 109.47415 * 120.00068 * 2 1 3 5 5 C 1.52996 * 109.46972 * 59.99860 * 4 2 1 6 6 C 1.52997 * 109.47131 * 60.00459 * 5 4 2 7 7 C 1.53006 * 109.46943 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47232 * 59.99874 * 6 5 4 9 9 C 1.52999 * 109.46991 * 299.99311 * 6 5 4 10 10 C 1.52997 * 109.47232 * 239.99942 * 2 1 3 11 11 H 1.09001 * 109.47502 * 180.02562 * 10 2 1 12 12 N 1.46902 * 109.47094 * 59.99500 * 10 2 1 13 13 C 1.46904 * 110.99949 * 154.99749 * 12 10 2 14 14 C 1.52997 * 109.47280 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47211 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47038 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00224 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99678 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00354 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47013 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47029 * 120.00389 * 20 18 16 23 23 H 1.48498 * 109.47095 * 240.00130 * 20 18 16 24 24 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47140 * 299.99907 * 1 2 3 26 26 H 1.08998 * 109.47624 * 60.00376 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 4 2 1 28 28 H 1.09000 * 109.46986 * 300.00118 * 4 2 1 29 29 H 1.09001 * 109.46993 * 180.02562 * 5 4 2 30 30 H 1.09000 * 109.47380 * 299.99696 * 5 4 2 31 31 H 1.09000 * 109.46866 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47372 * 300.00248 * 7 6 5 33 33 H 1.09004 * 109.47107 * 59.99949 * 7 6 5 34 34 H 1.09002 * 109.47045 * 300.00058 * 8 6 5 35 35 H 1.09001 * 109.47375 * 60.00133 * 8 6 5 36 36 H 1.09000 * 109.47140 * 180.02562 * 8 6 5 37 37 H 1.08993 * 109.47839 * 300.00447 * 9 6 5 38 38 H 1.09000 * 109.47160 * 180.02562 * 9 6 5 39 39 H 1.00900 * 110.99581 * 31.04993 * 12 10 2 40 40 H 1.09002 * 109.47300 * 300.00868 * 13 12 10 41 41 H 1.09006 * 109.46967 * 60.00497 * 13 12 10 42 42 H 1.09008 * 109.47067 * 300.00177 * 14 13 12 43 43 H 1.08997 * 109.46978 * 59.99938 * 14 13 12 44 44 H 1.08991 * 109.46837 * 299.99790 * 15 14 13 45 45 H 1.09002 * 109.46940 * 60.00123 * 15 14 13 46 46 H 0.97005 * 120.00407 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 6 1.5305 -4.3277 0.0004 8 6 3.5700 -2.8850 0.0000 9 6 1.5300 -2.1638 -1.2492 10 6 2.0400 -0.7212 -1.2492 11 1 3.1300 -0.7217 -1.2490 12 7 1.5502 -0.0288 -2.4487 13 6 2.4340 -0.2746 -3.5961 14 6 1.8929 0.4615 -4.8234 15 6 2.8130 0.2050 -6.0187 16 6 2.2797 0.9296 -7.2277 17 1 1.3752 1.5148 -7.1511 18 6 2.9470 0.8462 -8.4313 19 7 4.0486 0.1339 -8.5244 20 14 2.2856 1.7437 -9.9301 21 1 1.0420 2.4682 -9.5644 22 1 3.2999 2.7148 -10.4131 23 1 1.9894 0.7620 -11.0042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 3.1300 -0.7209 1.2495 28 1 1.6767 -0.2074 2.1392 29 1 1.8931 -2.6774 2.1394 30 1 0.4401 -2.1638 1.2493 31 1 1.8935 -4.8414 -0.8898 32 1 1.8942 -4.8413 0.8904 33 1 0.4405 -4.3281 0.0006 34 1 3.9334 -1.8573 0.0000 35 1 3.9334 -3.3988 0.8900 36 1 3.9334 -3.3984 -0.8902 37 1 0.4400 -2.1638 -1.2492 38 1 1.8929 -2.6779 -2.1392 39 1 1.4459 0.9601 -2.2779 40 1 3.4359 0.0886 -3.3674 41 1 2.4734 -1.3443 -3.8018 42 1 0.8908 0.0986 -5.0523 43 1 1.8538 1.5311 -4.6175 44 1 3.8151 0.5676 -5.7901 45 1 2.8517 -0.8647 -6.2244 46 1 4.5184 0.0755 -9.3711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717436236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -46.852322 kcal Electronic energy + Delta-G solvation = -19560.448486 eV Core-core repulsion = 16868.916945 eV Total energy + Delta-G solvation = -2691.531541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19968 -36.05846 -34.23822 -33.09988 -31.26948 -29.07861 -28.03946 -27.25576 -25.98287 -25.08123 -22.88514 -21.40163 -20.51173 -19.81260 -17.66853 -16.26654 -15.86342 -15.38251 -15.13295 -14.67120 -14.41815 -14.26242 -13.99765 -13.39876 -13.07152 -12.73597 -12.32254 -12.26801 -12.12971 -12.00036 -11.92234 -11.75385 -11.51098 -11.32557 -11.26132 -10.88059 -10.81077 -10.68001 -10.53617 -10.48962 -10.23855 -10.01418 -9.95290 -9.62509 -9.26496 -8.98932 -8.31324 -8.03658 -5.96303 -3.98132 3.33486 3.40721 3.45471 4.31166 4.49899 4.55298 4.59172 4.85214 5.00657 5.04750 5.16394 5.31260 5.37912 5.39551 5.46854 5.51514 5.54381 5.62358 5.68309 5.73984 5.83093 5.84429 5.88873 5.93321 5.96605 5.99291 6.03945 6.09229 6.12010 6.15872 6.36212 6.36673 6.38578 6.45385 6.57823 6.78563 6.86460 7.19437 7.47123 7.72460 7.74980 7.88800 8.04658 8.48225 9.09433 9.65746 11.15220 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.035018 B = 0.003722 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.395594 B = 7520.617379 C = 7909.366145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.065 4.065 7 C -0.140 4.140 8 C -0.146 4.146 9 C -0.096 4.096 10 C 0.090 3.910 11 H 0.042 0.958 12 N -0.686 5.686 13 C 0.060 3.940 14 C -0.106 4.106 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.336 0.664 40 H 0.021 0.979 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 -4.869 21.433 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.152 4.152 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.197 4.197 8 C -0.203 4.203 9 C -0.134 4.134 10 C -0.019 4.019 11 H 0.060 0.940 12 N -0.317 5.317 13 C -0.068 4.068 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.501 -5.420 21.130 22.274 hybrid contribution 0.604 1.006 -0.726 1.380 sum -3.897 -4.414 20.404 21.237 Atomic orbital electron populations 1.21838 0.94625 1.02189 1.01340 1.21259 0.96888 0.98584 0.94390 0.91785 1.21584 1.00650 0.95719 0.97258 1.21617 1.00799 0.95154 0.96964 1.20548 0.95538 0.95013 0.95488 1.21850 1.00878 0.95503 1.01513 1.21984 0.94948 1.01954 1.01381 1.21590 1.01261 0.94209 0.96313 1.21542 0.96834 0.94368 0.89184 0.93977 1.60579 1.51579 1.15274 1.04255 1.22145 0.93040 1.00872 0.90752 1.21613 1.00499 0.98112 0.94208 1.19070 0.94278 0.97018 0.91246 1.21307 1.09694 1.29977 0.94556 0.92640 1.25032 0.95006 0.95570 0.98960 1.69981 1.17366 1.40734 1.25575 0.86546 0.78959 0.79580 0.82992 1.19723 1.21078 1.21024 0.92133 0.93736 0.91700 0.91899 0.92184 0.92458 0.91635 0.92605 0.92986 0.92767 0.92184 0.93124 0.92701 0.91107 0.92059 0.84616 0.96051 0.91640 0.92634 0.93781 0.96879 0.96629 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.34 37.16 0.31 -1.15 16 2 C -0.09 -0.97 2.57 -90.62 -0.23 -1.20 16 3 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 4 C -0.11 -1.04 5.18 -26.73 -0.14 -1.18 16 5 C -0.11 -0.96 4.46 -26.73 -0.12 -1.08 16 6 C -0.07 -0.65 0.77 -154.51 -0.12 -0.77 16 7 C -0.14 -1.28 8.47 37.16 0.31 -0.97 16 8 C -0.15 -1.45 7.78 37.16 0.29 -1.16 16 9 C -0.10 -1.15 3.96 -26.73 -0.11 -1.26 16 10 C 0.09 1.13 1.91 -67.71 -0.13 1.00 16 11 H 0.04 0.57 6.08 -51.93 -0.32 0.25 16 12 N -0.69 -10.12 5.59 -106.72 -0.60 -10.72 16 13 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 14 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 20 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H 0.06 0.63 4.81 -51.93 -0.25 0.38 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.74 7.48 -51.93 -0.39 0.35 16 27 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.59 6.43 -51.93 -0.33 0.25 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 38 H 0.06 0.84 7.45 -51.93 -0.39 0.45 16 39 H 0.34 4.72 8.19 -39.29 -0.32 4.40 16 40 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 41 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 42 H 0.05 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -29.69 339.09 -9.17 -38.86 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.75 Total: -1.03 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -0.65 Total: -22.50 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.14 Total: -37.45 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.69 -9.17 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717436236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.993 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds