Wall clock time and date at job start Mon Mar 30 2020 06:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47179 * 2 1 4 4 C 1.53008 * 109.47055 * 239.99925 * 2 1 3 5 5 C 1.50697 * 109.46934 * 174.99757 * 4 2 1 6 6 H 1.08005 * 120.00302 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00064 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99657 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00299 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46884 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46894 * 299.99755 * 9 7 5 12 12 H 1.48496 * 109.47070 * 59.99878 * 9 7 5 13 13 N 1.46901 * 109.47170 * 119.99945 * 2 1 3 14 14 C 1.46894 * 111.00186 * 274.09947 * 13 2 1 15 15 H 1.09004 * 109.47310 * 345.93611 * 14 13 2 16 16 C 1.52998 * 109.47009 * 105.93550 * 14 13 2 17 17 C 1.53004 * 109.47118 * 180.02562 * 16 14 13 18 18 C 1.53007 * 109.46990 * 60.00248 * 17 16 14 19 19 C 1.52995 * 109.47151 * 179.97438 * 17 16 14 20 20 C 1.52998 * 109.47040 * 299.99951 * 17 16 14 21 21 C 1.52998 * 109.47125 * 60.00053 * 20 17 16 22 22 C 1.52998 * 109.47120 * 225.93483 * 14 13 2 23 23 H 1.09002 * 109.47283 * 60.00360 * 22 14 13 24 24 C 1.52998 * 109.47160 * 299.99822 * 22 14 13 25 25 H 1.09006 * 109.47193 * 301.23461 * 1 2 3 26 26 H 1.09002 * 109.47337 * 61.23628 * 1 2 3 27 27 H 1.08996 * 109.47257 * 181.23329 * 1 2 3 28 28 H 1.09003 * 109.47050 * 55.00171 * 4 2 1 29 29 H 1.08999 * 109.47236 * 295.00053 * 4 2 1 30 30 H 0.97002 * 120.00394 * 0.02562 * 8 7 5 31 31 H 1.00901 * 110.99838 * 38.05551 * 13 2 1 32 32 H 1.09006 * 109.47263 * 299.99545 * 16 14 13 33 33 H 1.08991 * 109.47550 * 60.00188 * 16 14 13 34 34 H 1.08995 * 109.47402 * 59.99915 * 18 17 16 35 35 H 1.08994 * 109.46764 * 180.02562 * 18 17 16 36 36 H 1.08997 * 109.46441 * 299.99866 * 18 17 16 37 37 H 1.09004 * 109.47237 * 60.00044 * 19 17 16 38 38 H 1.08999 * 109.47552 * 179.97438 * 19 17 16 39 39 H 1.09006 * 109.47809 * 300.00453 * 19 17 16 40 40 H 1.09007 * 109.46788 * 179.97438 * 20 17 16 41 41 H 1.08991 * 109.47117 * 299.99531 * 20 17 16 42 42 H 1.09004 * 109.47035 * 60.00038 * 21 20 17 43 43 H 1.08995 * 109.47118 * 179.97438 * 21 20 17 44 44 H 1.08999 * 109.47137 * 60.00603 * 24 22 14 45 45 H 1.08995 * 109.47090 * 180.02562 * 24 22 14 46 46 H 1.09000 * 109.47267 * 299.99917 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5392 7 6 4.2303 -1.1926 -2.3584 8 7 3.5763 -1.8369 -3.3000 9 14 6.0921 -1.0614 -2.4368 10 1 6.5868 -1.7602 -3.6499 11 1 6.4853 0.3694 -2.4953 12 1 6.6838 -1.6883 -1.2277 13 7 2.0196 -0.6925 1.1994 14 6 2.1027 0.2276 2.3415 15 1 2.0238 1.2553 1.9867 16 6 0.9600 -0.0647 3.3160 17 6 1.0461 0.8941 4.5053 18 6 0.9349 2.3364 4.0067 19 6 -0.0970 0.6023 5.4794 20 6 2.3861 0.7029 5.2185 21 6 3.5288 0.9951 4.2440 22 6 3.4427 0.0357 3.0546 23 1 4.2568 0.2440 2.3604 24 6 3.5534 -1.4067 3.5527 25 1 -0.3634 0.5329 0.8787 26 1 -0.3634 0.4945 -0.9009 27 1 -0.3633 -1.0274 0.0221 28 1 1.6053 -0.2618 -2.1370 29 1 1.7516 -1.7716 -1.2057 30 1 2.6095 -1.9054 -3.2592 31 1 1.4408 -1.4894 1.4185 32 1 0.0053 0.0721 2.8080 33 1 1.0388 -1.0922 3.6708 34 1 -0.0197 2.4726 3.4986 35 1 0.9967 3.0194 4.8539 36 1 1.7490 2.5445 3.3125 37 1 -0.0183 -0.4252 5.8346 38 1 -0.0354 1.2850 6.3269 39 1 -1.0516 0.7388 4.9711 40 1 2.4476 1.3863 6.0655 41 1 2.4652 -0.3245 5.5737 42 1 3.4496 2.0226 3.8889 43 1 4.4834 0.8593 4.7523 44 1 3.4919 -2.0894 2.7052 45 1 4.5078 -1.5432 4.0611 46 1 2.7393 -1.6148 4.2469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717509488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:44 Heat of formation + Delta-G solvation = -41.224125 kcal Electronic energy + Delta-G solvation = -20508.352524 eV Core-core repulsion = 17817.065040 eV Total energy + Delta-G solvation = -2691.287484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07248 -36.37801 -34.01583 -32.79209 -30.84057 -28.23020 -27.45670 -27.07996 -26.74315 -25.00822 -22.81829 -22.00622 -20.12837 -19.72681 -17.54054 -16.65616 -15.67324 -15.07116 -14.74284 -14.44423 -14.00670 -13.62712 -13.57341 -13.40960 -13.00274 -12.77336 -12.42928 -12.20508 -11.93713 -11.86787 -11.77867 -11.66513 -11.28978 -11.16590 -11.12462 -10.97492 -10.78915 -10.66786 -10.50846 -10.25457 -10.10976 -10.00391 -9.95197 -9.68768 -9.25997 -8.38637 -8.14930 -7.47934 -6.14777 -3.79029 3.54250 3.57441 3.75307 4.58403 4.67891 4.70473 4.74976 4.96504 5.26333 5.30976 5.40886 5.44708 5.52275 5.57993 5.61958 5.64397 5.66867 5.71258 5.74703 5.80972 5.84652 5.88993 5.91761 5.96068 6.04682 6.09185 6.14409 6.21285 6.27095 6.27862 6.33290 6.43410 6.52293 6.58674 6.63021 6.79904 6.84900 6.97312 7.40131 7.53426 8.00360 8.17225 8.48910 8.73015 9.11437 9.89285 11.25673 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.005990 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.564271 B = 4673.169343 C = 5304.035275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.098 3.902 3 H 0.063 0.937 4 C 0.020 3.980 5 C -0.565 4.565 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.925 5.925 9 Si 1.067 2.933 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.289 1.289 13 N -0.657 5.657 14 C 0.095 3.905 15 H 0.065 0.935 16 C -0.132 4.132 17 C -0.060 4.060 18 C -0.145 4.145 19 C -0.140 4.140 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.077 4.077 23 H 0.075 0.925 24 C -0.142 4.142 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.265 0.735 31 H 0.330 0.670 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 5.595 17.610 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.011 4.011 3 H 0.081 0.919 4 C -0.017 4.017 5 C -0.603 4.603 6 H 0.069 0.931 7 C -0.195 4.195 8 N -0.564 5.564 9 Si 0.896 3.104 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.216 1.216 13 N -0.285 5.285 14 C -0.016 4.016 15 H 0.083 0.917 16 C -0.171 4.171 17 C -0.061 4.061 18 C -0.202 4.202 19 C -0.198 4.198 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.096 4.096 23 H 0.093 0.907 24 C -0.199 4.199 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.626 5.236 16.517 17.703 hybrid contribution -2.394 0.538 1.166 2.717 sum -6.020 5.774 17.683 19.552 Atomic orbital electron populations 1.22653 0.99758 1.00971 1.00660 1.21716 0.89544 0.97732 0.92145 0.91902 1.19230 0.97322 0.94681 0.90503 1.21917 0.91572 1.36953 1.09901 0.93055 1.25740 1.06494 0.94183 0.93112 1.70784 1.09991 1.41041 1.34538 0.83576 0.75080 0.75945 0.75794 1.21185 1.21826 1.21619 1.60512 1.56821 1.08714 1.02461 1.21626 0.93289 0.96397 0.90277 0.91679 1.22362 0.99092 0.99343 0.96287 1.20472 0.94967 0.95503 0.95166 1.21975 1.01845 0.95449 1.00916 1.21868 0.97941 1.01185 0.98772 1.21604 0.93921 1.01414 0.97487 1.21659 0.97751 0.99620 0.96518 1.21067 0.98141 0.94923 0.95488 0.90667 1.21807 0.99938 0.97107 1.01038 0.94076 0.92817 0.93234 0.97739 0.97581 0.92489 0.85234 0.92471 0.91558 0.93122 0.93128 0.91804 0.92888 0.92984 0.92969 0.92729 0.91789 0.92125 0.92371 0.91312 0.93989 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.14 37.15 0.34 -2.73 16 2 C 0.10 2.00 2.48 -67.71 -0.17 1.83 16 3 H 0.06 1.34 7.35 -51.93 -0.38 0.96 16 4 C 0.02 0.51 3.97 -27.88 -0.11 0.40 16 5 C -0.56 -16.22 8.84 -34.44 -0.30 -16.53 16 6 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.01 0.19 5.46 -17.82 -0.10 0.09 16 8 N -0.93 -29.14 13.65 55.43 0.76 -28.38 16 9 Si 1.07 26.37 29.90 -169.99 -5.08 21.29 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.66 -12.10 5.08 -99.74 -0.51 -12.60 16 14 C 0.09 1.43 1.94 -67.72 -0.13 1.30 16 15 H 0.07 1.05 5.44 -51.93 -0.28 0.77 16 16 C -0.13 -1.66 3.60 -26.73 -0.10 -1.76 16 17 C -0.06 -0.65 0.77 -154.51 -0.12 -0.77 16 18 C -0.14 -1.56 7.78 37.16 0.29 -1.27 16 19 C -0.14 -1.34 8.47 37.15 0.31 -1.03 16 20 C -0.11 -1.15 4.46 -26.73 -0.12 -1.26 16 21 C -0.12 -1.42 5.18 -26.70 -0.14 -1.56 16 22 C -0.08 -1.14 2.91 -90.59 -0.26 -1.40 16 23 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 24 C -0.14 -2.02 8.34 37.16 0.31 -1.71 16 25 H 0.04 0.61 6.69 -51.93 -0.35 0.26 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 30 H 0.26 8.31 7.22 -40.82 -0.29 8.02 16 31 H 0.33 5.79 7.90 -39.29 -0.31 5.48 16 32 H 0.06 0.74 6.68 -51.93 -0.35 0.39 16 33 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.75 4.81 -51.93 -0.25 0.50 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 42 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.13 7.60 -51.93 -0.39 0.74 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.61 4.81 -51.93 -0.25 0.36 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -30.22 334.37 -8.63 -38.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.54 Total: 2.21 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -0.29 Total: -26.40 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.25 Total: -40.99 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.08 Total: 21.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.22 -8.63 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717509488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.376 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds