Wall clock time and date at job start Mon Mar 30 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47154 * 2 1 4 4 H 1.09000 * 109.46630 * 305.28307 * 3 2 1 5 5 C 1.50699 * 109.47033 * 185.28705 * 3 2 1 6 6 H 1.08001 * 120.00185 * 245.77446 * 5 3 2 7 7 C 1.37875 * 119.99831 * 65.76994 * 5 3 2 8 8 N 1.31513 * 120.00066 * 191.68767 * 7 5 3 9 9 Si 1.86796 * 120.00176 * 11.69431 * 7 5 3 10 10 H 1.48497 * 109.47541 * 90.66556 * 9 7 5 11 11 H 1.48507 * 109.47062 * 210.66543 * 9 7 5 12 12 H 1.48497 * 109.47143 * 330.66361 * 9 7 5 13 13 N 1.46904 * 109.47066 * 65.28609 * 3 2 1 14 14 C 1.46897 * 110.99472 * 208.06985 * 13 3 2 15 15 H 1.08996 * 109.63193 * 328.07797 * 14 13 3 16 16 C 1.54242 * 109.63001 * 88.46757 * 14 13 3 17 17 C 1.45536 * 112.40530 * 199.69454 * 16 14 13 18 18 C 1.54238 * 112.40929 * 298.06102 * 17 16 14 19 19 C 1.50478 * 108.52459 * 79.98523 * 18 17 16 20 20 C 1.54064 * 112.49731 * 265.85402 * 19 18 17 21 21 C 1.50477 * 109.62348 * 207.68901 * 14 13 3 22 22 C 1.52997 * 108.87900 * 266.91776 * 21 14 13 23 23 C 1.52999 * 108.87830 * 25.36357 * 21 14 13 24 24 H 1.09002 * 109.46696 * 174.58895 * 1 2 3 25 25 H 1.08999 * 109.46980 * 294.58577 * 1 2 3 26 26 H 1.08996 * 109.46679 * 54.58837 * 1 2 3 27 27 H 1.09000 * 109.46561 * 119.99927 * 2 1 3 28 28 H 1.08996 * 109.47255 * 239.99543 * 2 1 3 29 29 H 0.97003 * 120.00490 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00041 * 332.02352 * 13 3 2 31 31 H 1.08998 * 108.89404 * 320.44827 * 16 14 13 32 32 H 1.09001 * 108.89630 * 79.03405 * 16 14 13 33 33 H 1.09001 * 108.89864 * 58.81917 * 17 16 14 34 34 H 1.09007 * 108.89653 * 177.30772 * 17 16 14 35 35 H 1.09001 * 109.63209 * 199.69895 * 18 17 16 36 36 H 1.09001 * 109.62667 * 320.28032 * 18 17 16 37 37 H 1.09002 * 108.87450 * 26.62988 * 19 18 17 38 38 H 1.09000 * 108.87486 * 145.17520 * 19 18 17 39 39 H 1.09003 * 108.81490 * 162.57302 * 20 19 18 40 40 H 1.09002 * 108.81811 * 280.96449 * 20 19 18 41 41 H 1.09000 * 109.46976 * 71.97114 * 22 21 14 42 42 H 1.08996 * 109.46987 * 191.97414 * 22 21 14 43 43 H 1.09004 * 109.46862 * 311.97608 * 22 21 14 44 44 H 1.09001 * 109.46646 * 59.99932 * 23 21 14 45 45 H 1.08994 * 109.46962 * 179.97438 * 23 21 14 46 46 H 1.08998 * 109.46923 * 299.99616 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6015 1.9829 -0.8389 5 6 3.5414 1.4445 -0.1309 6 1 4.1540 1.8026 0.6833 7 6 4.1328 0.9890 -1.2901 8 7 5.4296 0.7730 -1.3257 9 14 3.0924 0.6790 -2.8101 10 1 3.0388 1.9135 -3.6337 11 1 3.6940 -0.4212 -3.6058 12 1 1.7171 0.2980 -2.3994 13 7 1.6574 2.0972 1.2582 14 6 1.5069 3.5466 1.0727 15 1 2.2023 3.8921 0.3078 16 6 0.0610 3.8664 0.6409 17 6 -0.0528 5.1716 0.0073 18 6 0.3408 6.3222 0.9561 19 6 1.8420 6.4187 0.9934 20 6 2.4548 5.6259 2.1637 21 6 1.7900 4.2542 2.3702 22 6 0.4727 4.4564 3.1216 23 6 2.7125 3.3785 3.2206 24 1 -0.3633 -1.0231 -0.0969 25 1 -0.3633 0.4276 0.9345 26 1 -0.3632 0.5955 -0.8375 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 5.8459 0.4529 -2.1413 30 1 0.8139 1.6913 1.6350 31 1 -0.2748 3.1029 -0.0607 32 1 -0.5829 3.8450 1.5202 33 1 0.5971 5.1974 -0.8674 34 1 -1.0833 5.3181 -0.3166 35 1 -0.0774 7.2593 0.5885 36 1 -0.0379 6.1168 1.9573 37 1 2.2436 6.0319 0.0568 38 1 2.1256 7.4665 1.0923 39 1 3.5160 5.4730 1.9672 40 1 2.3476 6.2096 3.0780 41 1 0.1238 3.4985 3.5074 42 1 0.6295 5.1467 3.9504 43 1 -0.2737 4.8680 2.4421 44 1 3.6452 3.2053 2.6839 45 1 2.9244 3.8826 4.1634 46 1 2.2252 2.4241 3.4199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719219705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:14 Heat of formation + Delta-G solvation = 6.777537 kcal Electronic energy + Delta-G solvation = -21146.712115 eV Core-core repulsion = 18457.506140 eV Total energy + Delta-G solvation = -2689.205976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.16990 -36.10615 -33.82400 -32.60014 -31.80451 -30.02914 -27.35983 -26.72749 -26.40520 -23.63519 -22.26994 -22.14123 -19.88610 -19.66170 -17.59501 -16.75554 -15.67648 -15.51445 -14.57491 -14.51511 -14.11829 -13.77431 -13.37742 -12.86238 -12.82485 -12.56137 -12.44691 -12.34323 -12.03272 -11.79311 -11.74893 -11.54813 -11.18161 -10.90607 -10.76994 -10.73007 -10.42829 -10.24721 -10.19274 -10.07811 -9.89951 -9.75423 -9.60104 -9.32547 -9.30034 -9.06819 -8.42834 -7.17733 -5.99717 -3.92619 3.29790 3.39256 3.41586 4.47491 4.88771 4.96511 5.05254 5.23691 5.29682 5.33167 5.46415 5.50277 5.56366 5.67341 5.82695 5.85986 5.89970 5.93376 6.04577 6.05506 6.06808 6.11006 6.26706 6.32847 6.35668 6.43656 6.45835 6.48465 6.53176 6.57082 6.59107 6.64719 6.72043 6.73795 6.82539 6.89187 7.02588 7.08712 7.24484 7.31902 7.85084 8.11810 8.39888 8.85678 9.17387 9.66952 11.13848 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.007835 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.623762 B = 3572.972893 C = 3695.941001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.193 3.807 4 H -0.005 1.005 5 C -0.492 4.492 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.251 1.251 13 N -0.663 5.663 14 C 0.109 3.891 15 H 0.082 0.918 16 C -0.168 4.168 17 C -0.111 4.111 18 C -0.136 4.136 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.049 4.049 22 C -0.169 4.169 23 C -0.115 4.115 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.261 0.739 30 H 0.317 0.683 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 8.015 5.647 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.171 4.171 3 C 0.085 3.915 4 H 0.013 0.987 5 C -0.530 4.530 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.683 3.317 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.175 1.175 13 N -0.292 5.292 14 C -0.002 4.002 15 H 0.101 0.899 16 C -0.206 4.206 17 C -0.149 4.149 18 C -0.173 4.173 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.049 4.049 22 C -0.225 4.225 23 C -0.172 4.172 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.818 7.965 5.755 14.615 hybrid contribution -1.217 -0.182 -1.621 2.035 sum -12.035 7.783 4.133 14.917 Atomic orbital electron populations 1.21913 0.98738 1.00195 1.00335 1.22196 0.92362 1.00513 1.02034 1.19538 0.96497 0.89184 0.86323 0.98716 1.21027 0.89192 1.41165 1.01632 0.90208 1.24921 0.94628 0.95204 0.98459 1.69943 1.10086 1.46163 1.27598 0.87373 0.82232 0.77908 0.84142 1.21010 1.21636 1.17545 1.60790 1.37111 1.01446 1.29852 1.21181 0.93610 0.89259 0.96129 0.89935 1.21562 1.00496 0.97285 1.01282 1.20399 1.00546 0.95118 0.98859 1.21766 0.96601 0.97606 1.01295 1.21318 0.95478 0.99158 0.99638 1.21950 0.99934 0.95008 0.97362 1.20164 0.94887 0.94020 0.95861 1.22817 0.98821 1.01015 0.99866 1.21640 1.00041 0.98948 0.96597 0.93945 0.93470 0.93895 0.91969 0.92061 0.92952 0.86568 0.92881 0.90608 0.92389 0.93306 0.92905 0.89612 0.91960 0.93070 0.92054 0.92928 0.93175 0.93848 0.89761 0.92090 0.95724 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.66 37.16 0.36 -2.27 16 2 C -0.13 -2.79 4.75 -26.73 -0.13 -2.92 16 3 C 0.19 4.38 1.29 -68.86 -0.09 4.29 16 4 H 0.00 -0.11 6.23 -51.93 -0.32 -0.43 16 5 C -0.49 -13.56 9.12 -34.44 -0.31 -13.87 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 1.97 5.38 -17.82 -0.10 1.87 16 8 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 9 Si 0.86 21.17 25.78 -169.99 -4.38 16.78 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.25 -5.79 5.29 56.52 0.30 -5.49 16 13 N -0.66 -12.77 4.00 -101.60 -0.41 -13.18 16 14 C 0.11 1.88 1.62 -68.32 -0.11 1.77 16 15 H 0.08 1.71 6.57 -51.93 -0.34 1.36 16 16 C -0.17 -2.47 4.43 -29.60 -0.13 -2.60 16 17 C -0.11 -1.49 5.21 -29.60 -0.15 -1.65 16 18 C -0.14 -1.64 5.57 -27.34 -0.15 -1.79 16 19 C -0.12 -1.57 5.31 -27.44 -0.15 -1.72 16 20 C -0.10 -1.49 4.82 -25.75 -0.12 -1.61 16 21 C -0.05 -0.74 0.68 -155.34 -0.11 -0.84 16 22 C -0.17 -2.15 6.33 37.16 0.24 -1.92 16 23 C -0.11 -1.91 7.42 37.16 0.28 -1.64 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.72 6.63 -51.93 -0.34 0.37 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.39 4.71 -51.93 -0.24 1.14 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.32 5.54 6.26 -39.29 -0.25 5.29 16 31 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 32 H 0.08 1.00 4.86 -51.93 -0.25 0.75 16 33 H 0.06 0.86 7.47 -51.93 -0.39 0.47 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.99 4.25 -51.93 -0.22 0.77 16 37 H 0.06 0.93 6.64 -51.93 -0.34 0.58 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.96 7.97 -51.93 -0.41 0.54 16 40 H 0.05 0.67 7.71 -51.93 -0.40 0.27 16 41 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 42 H 0.04 0.51 7.75 -51.93 -0.40 0.11 16 43 H 0.08 1.01 2.68 -51.93 -0.14 0.87 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 LS Contribution 318.99 15.07 4.81 4.81 Total: -1.00 -28.62 318.99 -8.18 -36.80 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.29 Total: 6.42 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -0.68 Total: -24.90 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.37 Total: -39.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.38 Total: 16.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.62 -8.18 -36.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719219705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.582 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds