Wall clock time and date at job start Mon Mar 30 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47154 * 2 1 4 4 H 1.09000 * 109.46630 * 305.28307 * 3 2 1 5 5 C 1.50699 * 109.47033 * 185.28705 * 3 2 1 6 6 H 1.08001 * 120.00185 * 245.77446 * 5 3 2 7 7 C 1.37875 * 119.99831 * 65.76994 * 5 3 2 8 8 N 1.31513 * 120.00066 * 191.68767 * 7 5 3 9 9 Si 1.86796 * 120.00176 * 11.69431 * 7 5 3 10 10 H 1.48497 * 109.47541 * 90.66556 * 9 7 5 11 11 H 1.48507 * 109.47062 * 210.66543 * 9 7 5 12 12 H 1.48497 * 109.47143 * 330.66361 * 9 7 5 13 13 N 1.46904 * 109.47066 * 65.28609 * 3 2 1 14 14 C 1.46897 * 110.99472 * 208.06985 * 13 3 2 15 15 H 1.08996 * 109.63193 * 328.07797 * 14 13 3 16 16 C 1.54242 * 109.63001 * 88.46757 * 14 13 3 17 17 C 1.45536 * 112.40530 * 199.69454 * 16 14 13 18 18 C 1.54238 * 112.40929 * 298.06102 * 17 16 14 19 19 C 1.50478 * 108.52459 * 79.98523 * 18 17 16 20 20 C 1.54064 * 112.49731 * 265.85402 * 19 18 17 21 21 C 1.50477 * 109.62348 * 207.68901 * 14 13 3 22 22 C 1.52997 * 108.87900 * 266.91776 * 21 14 13 23 23 C 1.52999 * 108.87830 * 25.36357 * 21 14 13 24 24 H 1.09002 * 109.46696 * 174.58895 * 1 2 3 25 25 H 1.08999 * 109.46980 * 294.58577 * 1 2 3 26 26 H 1.08996 * 109.46679 * 54.58837 * 1 2 3 27 27 H 1.09000 * 109.46561 * 119.99927 * 2 1 3 28 28 H 1.08996 * 109.47255 * 239.99543 * 2 1 3 29 29 H 0.97003 * 120.00490 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00041 * 332.02352 * 13 3 2 31 31 H 1.08998 * 108.89404 * 320.44827 * 16 14 13 32 32 H 1.09001 * 108.89630 * 79.03405 * 16 14 13 33 33 H 1.09001 * 108.89864 * 58.81917 * 17 16 14 34 34 H 1.09007 * 108.89653 * 177.30772 * 17 16 14 35 35 H 1.09001 * 109.63209 * 199.69895 * 18 17 16 36 36 H 1.09001 * 109.62667 * 320.28032 * 18 17 16 37 37 H 1.09002 * 108.87450 * 26.62988 * 19 18 17 38 38 H 1.09000 * 108.87486 * 145.17520 * 19 18 17 39 39 H 1.09003 * 108.81490 * 162.57302 * 20 19 18 40 40 H 1.09002 * 108.81811 * 280.96449 * 20 19 18 41 41 H 1.09000 * 109.46976 * 71.97114 * 22 21 14 42 42 H 1.08996 * 109.46987 * 191.97414 * 22 21 14 43 43 H 1.09004 * 109.46862 * 311.97608 * 22 21 14 44 44 H 1.09001 * 109.46646 * 59.99932 * 23 21 14 45 45 H 1.08994 * 109.46962 * 179.97438 * 23 21 14 46 46 H 1.08998 * 109.46923 * 299.99616 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6015 1.9829 -0.8389 5 6 3.5414 1.4445 -0.1309 6 1 4.1540 1.8026 0.6833 7 6 4.1328 0.9890 -1.2901 8 7 5.4296 0.7730 -1.3257 9 14 3.0924 0.6790 -2.8101 10 1 3.0388 1.9135 -3.6337 11 1 3.6940 -0.4212 -3.6058 12 1 1.7171 0.2980 -2.3994 13 7 1.6574 2.0972 1.2582 14 6 1.5069 3.5466 1.0727 15 1 2.2023 3.8921 0.3078 16 6 0.0610 3.8664 0.6409 17 6 -0.0528 5.1716 0.0073 18 6 0.3408 6.3222 0.9561 19 6 1.8420 6.4187 0.9934 20 6 2.4548 5.6259 2.1637 21 6 1.7900 4.2542 2.3702 22 6 0.4727 4.4564 3.1216 23 6 2.7125 3.3785 3.2206 24 1 -0.3633 -1.0231 -0.0969 25 1 -0.3633 0.4276 0.9345 26 1 -0.3632 0.5955 -0.8375 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 5.8459 0.4529 -2.1413 30 1 0.8139 1.6913 1.6350 31 1 -0.2748 3.1029 -0.0607 32 1 -0.5829 3.8450 1.5202 33 1 0.5971 5.1974 -0.8674 34 1 -1.0833 5.3181 -0.3166 35 1 -0.0774 7.2593 0.5885 36 1 -0.0379 6.1168 1.9573 37 1 2.2436 6.0319 0.0568 38 1 2.1256 7.4665 1.0923 39 1 3.5160 5.4730 1.9672 40 1 2.3476 6.2096 3.0780 41 1 0.1238 3.4985 3.5074 42 1 0.6295 5.1467 3.9504 43 1 -0.2737 4.8680 2.4421 44 1 3.6452 3.2053 2.6839 45 1 2.9244 3.8826 4.1634 46 1 2.2252 2.4241 3.4199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719219705.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:14 Heat of formation + Delta-G solvation = -10.056346 kcal Electronic energy + Delta-G solvation = -21147.442087 eV Core-core repulsion = 18457.506140 eV Total energy + Delta-G solvation = -2689.935948 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41729 -37.75150 -35.03353 -34.37390 -33.49337 -31.38448 -29.05613 -27.97235 -27.77340 -25.13478 -23.91254 -23.32485 -21.49252 -20.95334 -18.93139 -18.83659 -17.05895 -16.85515 -16.17524 -16.06352 -15.52950 -15.22894 -14.74657 -14.65606 -14.13583 -13.94164 -13.73221 -13.57802 -13.52488 -13.42385 -12.91342 -12.84077 -12.69987 -12.58084 -12.30853 -12.20177 -12.01413 -11.79312 -11.63639 -11.38381 -11.24254 -11.10571 -11.08958 -10.97186 -10.80164 -10.59643 -10.40351 -8.78886 -8.24678 -6.21504 1.29891 1.33433 1.42485 2.35374 3.09068 3.57413 3.79474 3.83660 4.12575 4.19869 4.27754 4.34569 4.38922 4.41141 4.43769 4.52294 4.54114 4.66283 4.81588 4.89816 4.91240 4.92150 5.01954 5.06148 5.12860 5.17328 5.18002 5.22680 5.25844 5.28624 5.33001 5.35998 5.40501 5.46336 5.47651 5.54355 5.58406 5.71457 5.75822 5.83554 5.87436 6.21047 6.66864 6.86474 7.11028 7.42483 8.93023 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.007835 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.623762 B = 3572.972893 C = 3695.941001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.202 3.798 4 H -0.011 1.011 5 C -0.490 4.490 6 H 0.029 0.971 7 C 0.009 3.991 8 N -0.952 5.952 9 Si 0.921 3.079 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.219 1.219 13 N -0.669 5.669 14 C 0.109 3.891 15 H 0.036 0.964 16 C -0.159 4.159 17 C -0.114 4.114 18 C -0.129 4.129 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.049 4.049 22 C -0.162 4.162 23 C -0.108 4.108 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.013 0.987 45 H 0.044 0.956 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 8.897 6.327 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.093 3.907 4 H 0.006 0.994 5 C -0.529 4.529 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.593 5.593 9 Si 0.746 3.254 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.142 1.142 13 N -0.300 5.300 14 C -0.001 4.001 15 H 0.054 0.946 16 C -0.198 4.198 17 C -0.152 4.152 18 C -0.166 4.166 19 C -0.155 4.155 20 C -0.143 4.143 21 C -0.050 4.050 22 C -0.218 4.218 23 C -0.166 4.166 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.061 0.939 32 H 0.121 0.879 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.033 0.967 45 H 0.063 0.937 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.991 8.854 6.456 18.569 hybrid contribution 0.208 -0.410 -1.728 1.788 sum -14.783 8.445 4.729 17.670 Atomic orbital electron populations 1.21817 0.94810 1.01986 1.01619 1.22062 0.95819 0.98304 1.00894 1.19277 0.92973 0.90868 0.87612 0.99367 1.21303 0.91923 1.39684 1.00007 0.95311 1.25757 0.95761 0.95358 1.01874 1.70108 1.12325 1.48341 1.28530 0.86317 0.82012 0.77532 0.79554 1.21149 1.21606 1.14216 1.60616 1.38329 1.02708 1.28308 1.21148 0.94735 0.87960 0.96246 0.94597 1.21489 0.98279 0.97797 1.02187 1.20413 1.01457 0.94963 0.98317 1.21754 0.95056 0.97990 1.01780 1.21311 0.96822 0.99694 0.97626 1.21953 0.98213 0.95105 0.98988 1.20150 0.96380 0.93751 0.94670 1.22739 0.96843 1.01949 1.00291 1.21553 0.98238 0.99497 0.97272 0.91717 0.91401 0.93627 0.92757 0.93722 0.93024 0.84852 0.93902 0.87902 0.94785 0.90887 0.90810 0.88088 0.94849 0.91325 0.95061 0.90503 0.92732 0.91993 0.88319 0.96732 0.93657 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.66 71.98 0.70 -3.74 16 2 C -0.13 -5.43 4.75 30.60 0.15 -5.29 16 3 C 0.20 9.28 1.29 44.17 0.06 9.34 16 4 H -0.01 -0.53 6.23 -2.39 -0.01 -0.54 16 5 C -0.49 -28.62 9.12 25.60 0.23 -28.39 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.51 5.38 84.65 0.46 0.97 16 8 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 9 Si 0.92 44.77 25.78 68.60 1.77 46.54 16 10 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 11 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 12 H -0.22 -9.48 5.29 99.48 0.53 -8.95 16 13 N -0.67 -25.94 4.00 -475.35 -1.90 -27.84 16 14 C 0.11 3.80 1.62 44.52 0.07 3.87 16 15 H 0.04 1.57 6.57 -2.39 -0.02 1.56 16 16 C -0.16 -4.31 4.43 28.74 0.13 -4.18 16 17 C -0.11 -2.76 5.21 28.73 0.15 -2.61 16 18 C -0.13 -2.68 5.57 30.20 0.17 -2.51 16 19 C -0.12 -2.98 5.31 30.14 0.16 -2.82 16 20 C -0.10 -2.93 4.82 31.23 0.15 -2.78 16 21 C -0.05 -1.44 0.68 -52.72 -0.04 -1.48 16 22 C -0.16 -3.50 6.33 71.98 0.46 -3.04 16 23 C -0.11 -3.68 7.42 71.98 0.53 -3.14 16 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.07 1.79 6.63 -2.39 -0.02 1.78 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.04 1.96 4.71 -2.39 -0.01 1.95 16 29 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.33 11.03 6.26 -89.69 -0.56 10.47 16 31 H 0.04 1.25 7.73 -2.39 -0.02 1.24 16 32 H 0.10 2.26 4.86 -2.39 -0.01 2.25 16 33 H 0.03 0.98 7.47 -2.39 -0.02 0.97 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.82 4.25 -2.39 -0.01 1.81 16 37 H 0.03 1.03 6.64 -2.39 -0.02 1.02 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.03 1.03 7.97 -2.39 -0.02 1.01 16 40 H 0.08 1.78 7.71 -2.39 -0.02 1.76 16 41 H 0.05 1.16 8.04 -2.39 -0.02 1.14 16 42 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16 43 H 0.10 1.86 2.68 -2.38 -0.01 1.86 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 2.09 7.13 -2.39 -0.02 2.08 16 Total: -1.00 -67.54 318.99 3.74 -63.81 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.20 Total: 24.46 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 3.37 Total: -45.81 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -1.60 Total: -89.00 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.77 Total: 46.54 kcal Total: -67.54 3.74 -63.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719219705.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.753 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds