Wall clock time and date at job start Mon Mar 30 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47532 * 2 1 4 4 H 1.09007 * 109.46712 * 55.13555 * 3 2 1 5 5 C 1.50696 * 109.47405 * 175.13426 * 3 2 1 6 6 H 1.08007 * 119.99926 * 119.99951 * 5 3 2 7 7 C 1.37876 * 120.00350 * 300.00389 * 5 3 2 8 8 N 1.31516 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00329 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47201 * 89.99980 * 9 7 5 11 11 H 1.48502 * 109.47237 * 210.00088 * 9 7 5 12 12 H 1.48506 * 109.47001 * 330.00085 * 9 7 5 13 13 N 1.46902 * 109.46984 * 295.14005 * 3 2 1 14 14 C 1.46900 * 110.99918 * 151.77828 * 13 3 2 15 15 H 1.09003 * 108.84972 * 327.51683 * 14 13 3 16 16 C 1.54062 * 108.80216 * 86.03123 * 14 13 3 17 17 C 1.54066 * 112.81613 * 162.43511 * 16 14 13 18 18 C 1.50328 * 112.43161 * 41.69814 * 17 16 14 19 19 C 1.54247 * 108.59764 * 265.76390 * 18 17 16 20 20 C 1.45538 * 112.32881 * 80.05933 * 19 18 17 21 21 C 1.50475 * 108.87455 * 208.96325 * 14 13 3 22 22 C 1.52993 * 109.62996 * 25.45286 * 21 14 13 23 23 C 1.53000 * 109.78313 * 264.96730 * 21 14 13 24 24 H 1.09005 * 109.46805 * 65.20974 * 1 2 3 25 25 H 1.08998 * 109.47070 * 185.20360 * 1 2 3 26 26 H 1.08994 * 109.46955 * 305.20960 * 1 2 3 27 27 H 1.08998 * 109.47139 * 239.99666 * 2 1 3 28 28 H 1.09002 * 109.47195 * 120.00559 * 2 1 3 29 29 H 0.96992 * 120.00268 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99427 * 275.72631 * 13 3 2 31 31 H 1.08997 * 108.81747 * 283.30001 * 16 14 13 32 32 H 1.08998 * 108.81024 * 41.69066 * 16 14 13 33 33 H 1.08998 * 108.87496 * 162.49909 * 17 16 14 34 34 H 1.09000 * 108.88154 * 280.94108 * 17 16 14 35 35 H 1.09001 * 109.49116 * 146.09403 * 18 17 16 36 36 H 1.08997 * 109.69134 * 25.55675 * 18 17 16 37 37 H 1.08996 * 108.89508 * 319.34885 * 19 18 17 38 38 H 1.09008 * 108.89476 * 200.75939 * 19 18 17 39 39 H 1.09002 * 108.89833 * 58.86516 * 20 19 18 40 40 H 1.08994 * 108.89838 * 177.45499 * 20 19 18 41 41 H 1.09003 * 109.46924 * 179.03084 * 22 21 14 42 42 H 1.08996 * 109.47746 * 299.03368 * 22 21 14 43 43 H 1.09000 * 109.46984 * 59.03658 * 22 21 14 44 44 H 1.08997 * 109.47666 * 261.93272 * 23 21 14 45 45 H 1.08996 * 109.47659 * 21.94518 * 23 21 14 46 46 H 1.09008 * 109.46736 * 141.93882 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9808 0.8433 5 6 3.5422 1.4441 0.1205 6 1 4.1458 1.8893 -0.6567 7 6 4.1461 0.8773 1.2228 8 7 3.4111 0.3355 2.1694 9 14 6.0081 0.8787 1.3718 10 1 6.4475 2.1109 2.0744 11 1 6.4439 -0.3130 2.1433 12 1 6.6132 0.8393 0.0162 13 7 1.6486 2.1002 -1.2538 14 6 1.4960 3.5487 -1.0630 15 1 1.1391 3.7348 -0.0500 16 6 2.8714 4.2203 -1.2382 17 6 2.7683 5.7373 -1.4870 18 6 1.7374 6.3933 -0.6113 19 6 0.4071 6.4674 -1.3884 20 6 -0.3159 5.2045 -1.3687 21 6 0.4750 4.0637 -2.0411 22 6 -0.4813 2.9340 -2.4283 23 6 1.1778 4.5937 -3.2924 24 1 -0.3633 0.4309 -0.9330 25 1 -0.3633 -1.0234 0.0932 26 1 -0.3633 0.5925 0.8396 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8899 29 1 3.8359 -0.0629 2.9450 30 1 2.3102 1.9001 -1.9889 31 1 3.4625 4.0511 -0.3382 32 1 3.3816 3.7608 -2.0847 33 1 3.7391 6.1932 -1.2928 34 1 2.5038 5.9063 -2.5308 35 1 2.0670 7.3997 -0.3530 36 1 1.5990 5.8060 0.2964 37 1 0.6173 6.7377 -2.4232 38 1 -0.2196 7.2399 -0.9426 39 1 -0.5195 4.9304 -0.3335 40 1 -1.2632 5.3318 -1.8925 41 1 -1.2301 3.3140 -3.1234 42 1 0.0800 2.1293 -2.9031 43 1 -0.9755 2.5538 -1.5342 44 1 1.2761 5.6770 -3.2228 45 1 2.1672 4.1433 -3.3718 46 1 0.5906 4.3382 -4.1746 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719219709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:22 Heat of formation + Delta-G solvation = -17.533333 kcal Electronic energy + Delta-G solvation = -21090.851193 eV Core-core repulsion = 18400.591019 eV Total energy + Delta-G solvation = -2690.260174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34515 -37.58523 -34.85194 -34.11054 -33.30583 -31.32766 -28.61207 -28.02862 -27.44461 -24.97486 -24.30108 -23.32545 -21.44140 -20.62242 -19.11720 -18.24272 -16.92895 -16.70736 -16.43640 -15.75091 -15.41368 -15.03046 -14.70875 -14.47556 -14.13424 -13.68622 -13.62438 -13.32481 -13.16685 -13.07016 -12.93785 -12.80867 -12.60440 -12.50394 -12.26887 -12.19188 -11.94961 -11.79496 -11.58164 -11.45953 -11.29426 -11.16609 -10.91369 -10.86885 -10.67431 -10.48761 -10.40939 -8.86640 -8.01185 -6.22302 1.34886 1.37262 1.45490 2.39877 3.17236 3.74464 3.79434 3.86870 4.15398 4.29109 4.34197 4.37843 4.51603 4.53210 4.64055 4.71449 4.78306 4.86547 4.91929 4.94429 4.99677 5.08616 5.14758 5.18390 5.24874 5.26593 5.30043 5.34833 5.38844 5.41994 5.45953 5.48018 5.53907 5.57649 5.61948 5.66646 5.72212 5.80126 5.87718 5.95209 6.17847 6.26605 6.49647 6.93201 7.11001 7.48304 8.94058 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.007963 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.232412 B = 3515.469955 C = 4337.904764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.227 3.773 4 H -0.011 1.011 5 C -0.542 4.542 6 H 0.053 0.947 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.943 3.057 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.668 5.668 14 C 0.115 3.885 15 H 0.031 0.969 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.047 4.047 22 C -0.106 4.106 23 C -0.156 4.156 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.056 0.944 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.088 0.912 45 H 0.050 0.950 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 10.600 -9.636 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.006 0.994 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.295 5.295 14 C 0.004 3.996 15 H 0.049 0.951 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.047 4.047 22 C -0.164 4.164 23 C -0.213 4.213 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.477 10.345 -9.370 15.387 hybrid contribution 2.275 -0.265 1.113 2.547 sum -4.201 10.080 -8.256 13.690 Atomic orbital electron populations 1.21558 0.96584 0.99206 1.00633 1.21348 0.94242 0.98729 0.99731 1.18903 0.91410 0.91189 0.86704 0.99351 1.22205 0.94032 1.36766 1.05175 0.92884 1.25639 1.01518 0.95223 0.95864 1.70016 1.36110 1.39357 1.09863 0.85793 0.81905 0.77256 0.78083 1.20829 1.21068 1.19405 1.61190 1.51920 1.08322 1.08081 1.21264 0.93629 0.87616 0.97075 0.95094 1.22538 0.97880 0.96380 0.99827 1.21772 0.98764 0.93694 1.02631 1.21294 0.95858 1.00075 0.98199 1.20567 0.95919 0.97432 1.01417 1.20526 0.99130 0.95035 0.99688 1.20251 0.94701 0.94911 0.94854 1.21545 0.97413 0.97660 0.99744 1.22595 1.00090 1.02356 0.96214 0.91918 0.94086 0.95643 0.95376 0.92546 0.93202 0.85778 0.95321 0.92949 0.93378 0.88315 0.91072 0.94447 0.89800 0.91436 0.94460 0.90970 0.93091 0.92503 0.94863 0.89387 0.93075 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.74 71.98 0.70 -4.34 16 2 C -0.10 -4.95 5.45 30.59 0.17 -4.78 16 3 C 0.23 11.29 1.99 44.17 0.09 11.38 16 4 H -0.01 -0.66 7.32 -2.38 -0.02 -0.68 16 5 C -0.54 -29.17 7.27 25.60 0.19 -28.98 16 6 H 0.05 2.81 7.04 -2.91 -0.02 2.79 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -53.16 11.30 21.45 0.24 -52.92 16 9 Si 0.94 44.13 29.54 68.60 2.03 46.15 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.67 -26.96 3.54 -475.67 -1.68 -28.64 16 14 C 0.11 4.12 1.67 44.46 0.07 4.20 16 15 H 0.03 1.31 5.79 -2.39 -0.01 1.30 16 16 C -0.13 -4.45 3.58 31.31 0.11 -4.33 16 17 C -0.13 -3.53 5.24 30.09 0.16 -3.37 16 18 C -0.12 -2.97 5.59 30.15 0.17 -2.80 16 19 C -0.12 -2.48 5.18 28.74 0.15 -2.33 16 20 C -0.11 -2.64 4.45 28.74 0.13 -2.51 16 21 C -0.05 -1.30 0.72 -52.58 -0.04 -1.34 16 22 C -0.11 -3.03 7.34 71.98 0.53 -2.51 16 23 C -0.16 -3.66 7.33 71.98 0.53 -3.14 16 24 H 0.06 2.39 7.48 -2.38 -0.02 2.37 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 3.12 5.96 -2.39 -0.01 3.10 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.33 13.20 7.76 -89.69 -0.70 12.50 16 31 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 32 H 0.05 1.82 6.49 -2.39 -0.02 1.80 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 2.24 4.10 -2.39 -0.01 2.23 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.04 1.16 6.97 -2.39 -0.02 1.14 16 37 H 0.08 1.51 5.53 -2.39 -0.01 1.50 16 38 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.04 1.08 7.47 -2.39 -0.02 1.06 16 40 H 0.07 1.55 7.96 -2.39 -0.02 1.53 16 41 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 42 H 0.06 1.74 7.22 -2.39 -0.02 1.72 16 43 H 0.03 1.05 7.73 -2.39 -0.02 1.04 16 44 H 0.09 1.76 3.03 -2.39 -0.01 1.75 16 45 H 0.05 1.31 5.59 -2.39 -0.01 1.30 16 46 H 0.05 1.16 7.73 -2.38 -0.02 1.15 16 Total: -1.00 -57.96 320.16 4.23 -53.73 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.25 Total: 25.17 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.40 Total: -43.49 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.44 Total: -81.56 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -57.96 4.23 -53.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719219709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.196 kcal (2) G-P(sol) polarization free energy of solvation -57.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds